Wall clock time and date at job start Tue Mar 31 2020 18:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.46344 * 2 1 4 4 C 1.34770 * 119.99921 * 60.02326 * 3 2 1 5 5 O 1.21278 * 120.00583 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99918 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.79038 * 300.79767 * 6 4 3 8 8 C 1.53624 * 109.79734 * 61.65593 * 6 4 3 9 9 C 1.52821 * 110.70309 * 176.94781 * 8 6 4 10 10 C 1.53661 * 110.61317 * 306.25511 * 9 8 6 11 11 C 1.52253 * 107.57310 * 56.12331 * 10 9 8 12 12 H 1.08994 * 110.79140 * 57.73294 * 11 10 9 13 13 C 1.53266 * 113.89567 * 182.76004 * 11 10 9 14 14 C 1.54990 * 104.18626 * 144.40505 * 13 11 10 15 15 C 1.55189 * 104.93366 * 357.51206 * 14 13 11 16 16 N 1.45669 * 109.79710 * 180.02562 * 6 4 3 17 17 C 1.53039 * 109.45064 * 119.96520 * 2 1 3 18 18 C 1.53189 * 109.31545 * 181.37793 * 17 2 1 19 19 N 1.46927 * 108.77733 * 305.36270 * 18 17 2 20 20 C 1.36936 * 120.63241 * 233.58639 * 19 18 17 21 21 H 1.08007 * 119.99801 * 151.83235 * 20 19 18 22 22 C 1.38813 * 120.00005 * 331.83410 * 20 19 18 23 23 N 1.31615 * 119.99942 * 343.07472 * 22 20 19 24 24 Si 1.86799 * 119.99873 * 163.07730 * 22 20 19 25 25 H 1.48507 * 109.47204 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47370 * 119.99983 * 24 22 20 27 27 H 1.48501 * 109.46966 * 239.99949 * 24 22 20 28 28 C 1.46931 * 118.73334 * 53.60640 * 19 18 17 29 29 C 1.53041 * 109.46051 * 240.02339 * 2 1 3 30 30 H 1.09006 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46929 * 299.97556 * 1 2 3 32 32 H 1.09005 * 109.47181 * 59.97511 * 1 2 3 33 33 H 0.97000 * 120.00086 * 240.03201 * 3 2 1 34 34 H 1.09005 * 109.22977 * 297.26652 * 8 6 4 35 35 H 1.09000 * 109.23076 * 56.62942 * 8 6 4 36 36 H 1.08993 * 109.24835 * 185.95936 * 9 8 6 37 37 H 1.08999 * 109.21214 * 66.52881 * 9 8 6 38 38 H 1.09001 * 109.83801 * 296.60509 * 10 9 8 39 39 H 1.08994 * 109.89143 * 175.67014 * 10 9 8 40 40 H 1.08999 * 110.49140 * 25.73142 * 13 11 10 41 41 H 1.08996 * 110.48626 * 263.08242 * 13 11 10 42 42 H 1.08994 * 110.34975 * 238.64485 * 14 13 11 43 43 H 1.09004 * 110.43906 * 116.42075 * 14 13 11 44 44 H 1.08998 * 110.61189 * 217.49452 * 15 14 13 45 45 H 1.09005 * 110.74514 * 94.57788 * 15 14 13 46 46 H 1.08999 * 109.50013 * 61.42551 * 17 2 1 47 47 H 1.09003 * 109.49846 * 301.33075 * 17 2 1 48 48 H 1.09004 * 109.58810 * 185.57510 * 18 17 2 49 49 H 1.09003 * 109.58627 * 65.15012 * 18 17 2 50 50 H 0.96999 * 119.99981 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.58647 * 66.18352 * 28 19 18 52 52 H 1.09004 * 109.58046 * 186.46145 * 28 19 18 53 53 H 1.08997 * 109.49821 * 58.67834 * 29 2 1 54 54 H 1.09003 * 109.50192 * 298.58029 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2109 1.0110 5 8 0.9963 1.8140 1.9211 6 6 2.1945 3.6320 1.0107 7 1 3.2843 3.6386 0.9957 8 6 1.6515 4.3752 -0.2193 9 6 2.0862 5.8402 -0.2007 10 6 1.6939 6.5040 1.1284 11 6 2.3138 5.6847 2.2520 12 1 3.3960 5.6259 2.1363 13 6 1.9558 6.1852 3.6557 14 6 1.8357 4.8917 4.5010 15 6 2.0731 3.7335 3.4957 16 7 1.7138 4.3251 2.1983 17 6 2.0396 -0.7208 1.2502 18 6 3.5711 -0.6889 1.2645 19 7 4.0676 -1.2494 0.0004 20 6 4.9760 -2.2741 0.0006 21 1 5.0037 -2.9713 -0.8239 22 6 5.8610 -2.4169 1.0604 23 7 6.0657 -1.4130 1.8866 24 14 6.7616 -4.0337 1.3138 25 1 6.3587 -4.9958 0.2567 26 1 8.2264 -3.8013 1.2401 27 1 6.4151 -4.5897 2.6465 28 6 3.5713 -0.6891 -1.2640 29 6 2.0398 -0.7210 -1.2499 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3634 0.5142 -0.8898 33 1 2.5753 1.6987 -0.7277 34 1 2.0319 3.8992 -1.1232 35 1 0.5628 4.3236 -0.2182 36 1 1.6034 6.3686 -1.0226 37 1 3.1677 5.8950 -0.3244 38 1 0.6089 6.5122 1.2317 39 1 2.0760 7.5243 1.1603 40 1 1.0061 6.7199 3.6395 41 1 2.7478 6.8242 4.0464 42 1 0.8403 4.8159 4.9385 43 1 2.5949 4.8762 5.2831 44 1 1.4247 2.8878 3.7247 45 1 3.1189 3.4262 3.5006 46 1 1.6973 -1.7556 1.2385 47 1 1.6569 -0.2206 2.1399 48 1 3.9412 -1.2849 2.0988 49 1 3.9142 0.3406 1.3676 50 1 6.6838 -1.5129 2.6274 51 1 3.9145 0.3404 -1.3671 52 1 3.9437 -1.2837 -2.0982 53 1 1.6574 -0.2210 -2.1398 54 1 1.6976 -1.7558 -1.2382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045584573.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:19 Heat of formation + Delta-G solvation = -31.738434 kcal Electronic energy + Delta-G solvation = -31948.122139 eV Core-core repulsion = 28111.958312 eV Total energy + Delta-G solvation = -3836.163827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.85836 -40.54870 -38.62233 -36.15078 -35.97636 -33.71930 -33.31900 -32.18942 -31.61301 -30.15872 -29.09796 -28.30510 -25.96402 -25.15932 -23.95145 -22.85726 -22.57283 -22.13639 -21.34300 -20.75523 -20.11698 -18.81647 -17.99943 -17.13022 -16.86514 -16.35795 -16.11202 -16.00355 -15.86010 -15.59493 -15.33480 -15.13598 -14.92024 -14.70538 -14.41090 -14.25740 -13.99158 -13.85581 -13.66466 -13.29537 -13.23980 -13.19673 -12.94824 -12.85640 -12.60928 -12.57656 -12.51051 -12.21632 -12.19449 -12.01504 -11.96483 -11.82465 -11.77211 -11.62291 -11.38740 -11.32912 -11.30326 -11.19278 -10.56758 -10.22762 -9.90791 -9.40090 -8.68539 -7.89292 -5.34851 1.42496 1.45168 1.55116 1.74867 2.18957 2.48806 3.00183 3.26126 3.53288 3.65398 3.69260 3.76392 3.89095 4.02794 4.03159 4.08267 4.12895 4.14709 4.24531 4.30040 4.35092 4.46923 4.47845 4.65784 4.67680 4.70300 4.71591 4.81164 4.87584 4.88342 4.94683 4.95880 4.97849 5.03547 5.06961 5.09160 5.13797 5.17025 5.19918 5.21760 5.28341 5.31264 5.33514 5.38029 5.47786 5.48804 5.61201 5.67386 5.79180 6.00011 6.08223 6.36419 6.72699 7.12410 7.41066 7.84967 8.36574 9.16602 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.003580 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.820577 B = 7819.222496 C = 8597.353236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.189 3.811 3 N -0.705 5.705 4 C 0.518 3.482 5 O -0.555 6.555 6 C 0.067 3.933 7 H 0.053 0.947 8 C -0.097 4.097 9 C -0.116 4.116 10 C -0.100 4.100 11 C 0.055 3.945 12 H 0.042 0.958 13 C -0.108 4.108 14 C -0.117 4.117 15 C 0.041 3.959 16 N -0.507 5.507 17 C -0.138 4.138 18 C 0.198 3.802 19 N -0.607 5.607 20 C -0.260 4.260 21 H 0.071 0.929 22 C -0.052 4.052 23 N -0.937 5.937 24 Si 0.964 3.036 25 H -0.263 1.263 26 H -0.292 1.292 27 H -0.295 1.295 28 C 0.140 3.860 29 C -0.123 4.123 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.404 0.596 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.012 0.988 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.038 0.962 49 H -0.012 1.012 50 H 0.247 0.753 51 H 0.021 0.979 52 H 0.060 0.940 53 H 0.097 0.903 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.872 17.053 -5.006 20.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.103 3.897 3 N -0.357 5.357 4 C 0.304 3.696 5 O -0.434 6.434 6 C -0.045 4.045 7 H 0.070 0.930 8 C -0.135 4.135 9 C -0.154 4.154 10 C -0.137 4.137 11 C -0.052 4.052 12 H 0.060 0.940 13 C -0.146 4.146 14 C -0.155 4.155 15 C -0.087 4.087 16 N -0.232 5.232 17 C -0.178 4.178 18 C 0.072 3.928 19 N -0.331 5.331 20 C -0.390 4.390 21 H 0.088 0.912 22 C -0.247 4.247 23 N -0.583 5.583 24 Si 0.792 3.208 25 H -0.187 1.187 26 H -0.219 1.219 27 H -0.222 1.222 28 C 0.015 3.985 29 C -0.162 4.162 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.240 0.760 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.031 0.969 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.056 0.944 49 H 0.006 0.994 50 H 0.056 0.944 51 H 0.039 0.961 52 H 0.079 0.921 53 H 0.116 0.884 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.812 16.714 -4.336 20.920 hybrid contribution 2.196 -1.279 0.582 2.607 sum -9.616 15.434 -3.755 18.568 Atomic orbital electron populations 1.22077 0.93597 1.02363 1.02504 1.20151 0.93801 0.80490 0.95249 1.46007 1.53142 1.11451 1.25134 1.20677 0.79807 0.87541 0.81535 1.90572 1.39015 1.77457 1.36319 1.21629 0.97502 0.90932 0.94453 0.92978 1.21551 1.01561 0.96281 0.94079 1.21594 1.01473 0.93879 0.98427 1.21510 1.01223 0.98508 0.92491 1.22650 0.96451 0.89073 0.97036 0.93994 1.22154 1.02965 0.96651 0.92828 1.22526 1.02428 0.93544 0.97040 1.22835 0.97307 0.98585 0.89968 1.63782 1.56219 1.03217 1.00021 1.22366 0.97664 0.99211 0.98559 1.20257 0.89574 0.94122 0.88884 1.44285 1.48172 1.39638 1.00966 1.19588 1.09291 1.03580 1.06518 0.91177 1.25791 0.98617 1.00239 1.00069 1.70209 1.38484 1.30912 1.18694 0.85260 0.77720 0.80292 0.77525 1.18688 1.21864 1.22219 1.21080 0.92802 0.96248 0.88352 1.22197 0.96648 1.00931 0.96416 0.91545 0.92806 0.91088 0.76008 0.89762 0.91293 0.89308 0.91859 0.91042 0.89336 0.89839 0.89739 0.90862 0.90814 0.91107 0.96941 0.92860 0.92673 0.94373 0.99366 0.94434 0.96116 0.92144 0.88433 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 8.40 71.98 0.60 -3.66 16 2 C 0.19 6.21 0.66 3.63 0.00 6.21 16 3 N -0.71 -21.68 4.02 -422.82 -1.70 -23.38 16 4 C 0.52 17.20 6.41 87.66 0.56 17.77 16 5 O -0.56 -21.98 10.41 -3.02 -0.03 -22.01 16 6 C 0.07 1.85 2.40 44.61 0.11 1.95 16 7 H 0.05 1.54 7.99 -2.39 -0.02 1.53 16 8 C -0.10 -1.90 5.27 30.74 0.16 -1.74 16 9 C -0.12 -1.77 5.95 30.76 0.18 -1.59 16 10 C -0.10 -1.57 5.64 30.57 0.17 -1.40 16 11 C 0.06 1.16 2.50 44.41 0.11 1.27 16 12 H 0.04 0.94 7.98 -2.39 -0.02 0.92 16 13 C -0.11 -1.96 6.65 31.36 0.21 -1.75 16 14 C -0.12 -2.65 7.05 32.03 0.23 -2.42 16 15 C 0.04 1.26 5.77 87.03 0.50 1.77 16 16 N -0.51 -13.89 4.43 -843.48 -3.74 -17.63 16 17 C -0.14 -5.83 4.67 30.67 0.14 -5.69 16 18 C 0.20 10.06 5.04 86.36 0.44 10.49 16 19 N -0.61 -30.20 2.99 -699.07 -2.09 -32.30 16 20 C -0.26 -14.28 9.58 84.03 0.81 -13.47 16 21 H 0.07 3.72 7.89 -2.91 -0.02 3.69 16 22 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 23 N -0.94 -57.05 11.20 21.65 0.24 -56.81 16 24 Si 0.96 45.65 29.59 68.60 2.03 47.68 16 25 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 27 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 28 C 0.14 5.36 6.24 86.36 0.54 5.90 16 29 C -0.12 -3.71 4.96 30.67 0.15 -3.56 16 30 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.05 1.81 6.17 -2.39 -0.01 1.80 16 32 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.40 10.84 6.87 -92.71 -0.64 10.20 16 34 H 0.08 1.40 7.77 -2.38 -0.02 1.38 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.34 8.00 -2.39 -0.02 1.32 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 44 H 0.07 2.60 6.44 -2.39 -0.02 2.58 16 45 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 46 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.05 2.49 6.20 -2.39 -0.01 2.48 16 48 H 0.04 2.26 6.06 -2.38 -0.01 2.25 16 49 H -0.01 -0.64 7.74 -2.39 -0.02 -0.66 16 50 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 51 H 0.02 0.77 6.94 -2.39 -0.02 0.75 16 52 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16 53 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 54 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -69.88 392.34 0.27 -69.61 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.23 Total: 27.31 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.33 Total: 7.54 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -7.29 Total: -130.12 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.03 Total: -22.01 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -69.88 0.27 -69.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045584573.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.868 kcal (2) G-P(sol) polarization free energy of solvation -69.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds