Wall clock time and date at job start Tue Mar 31 2020 19:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47201 * 2 1 4 4 H 1.08998 * 109.87879 * 55.59850 * 3 2 1 5 5 C 1.54322 * 109.88687 * 294.39970 * 3 2 1 6 6 H 1.09000 * 110.70887 * 336.68969 * 5 3 2 7 7 C 1.50697 * 110.70413 * 99.93050 * 5 3 2 8 8 O 1.21278 * 120.00497 * 359.97438 * 7 5 3 9 9 N 1.34787 * 120.00001 * 179.97438 * 7 5 3 10 10 C 1.44785 * 120.17702 * 359.72165 * 9 7 5 11 11 C 1.50955 * 112.54916 * 264.66308 * 10 9 7 12 12 C 1.51317 * 113.24503 * 285.44124 * 11 10 9 13 13 H 1.08997 * 111.31257 * 185.13777 * 12 11 10 14 14 C 1.54716 * 106.48475 * 307.56427 * 12 11 10 15 15 C 1.54226 * 104.37574 * 89.11653 * 14 12 11 16 16 C 1.50870 * 105.27594 * 11.56670 * 15 14 12 17 17 H 1.08997 * 105.90257 * 122.19974 * 16 15 14 18 18 C 1.49815 * 120.17837 * 179.97438 * 9 7 5 19 19 N 1.48061 * 109.90307 * 7.86783 * 16 15 14 20 20 C 1.36946 * 127.83642 * 155.16150 * 19 16 15 21 21 H 1.07996 * 119.99602 * 180.02562 * 20 19 16 22 22 C 1.38806 * 120.00099 * 0.02722 * 20 19 16 23 23 N 1.31619 * 119.99948 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00067 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47226 * 59.99404 * 24 22 20 26 26 H 1.48497 * 109.47419 * 180.02562 * 24 22 20 27 27 H 1.48510 * 109.46834 * 299.99676 * 24 22 20 28 28 C 1.55144 * 103.01937 * 218.31004 * 5 3 2 29 29 C 1.54911 * 101.65240 * 35.65333 * 28 5 3 30 30 N 1.47446 * 109.89082 * 176.63331 * 3 2 1 31 31 C 1.46898 * 110.99547 * 356.14764 * 30 3 2 32 32 H 1.09005 * 109.46583 * 305.40666 * 1 2 3 33 33 H 1.09000 * 109.47467 * 65.40866 * 1 2 3 34 34 H 1.08999 * 109.47147 * 185.41493 * 1 2 3 35 35 H 1.09006 * 109.46341 * 240.00289 * 2 1 3 36 36 H 1.08996 * 109.47256 * 120.00344 * 2 1 3 37 37 H 1.09000 * 108.93489 * 25.26724 * 10 9 7 38 38 H 1.08999 * 108.93177 * 143.84636 * 10 9 7 39 39 H 1.08991 * 108.80862 * 164.41368 * 11 10 9 40 40 H 1.09004 * 108.64922 * 46.35445 * 11 10 9 41 41 H 1.08995 * 110.45384 * 207.84207 * 14 12 11 42 42 H 1.09004 * 110.44858 * 330.39364 * 14 12 11 43 43 H 1.09005 * 110.28715 * 252.61704 * 15 14 12 44 44 H 1.08997 * 110.28425 * 130.51920 * 15 14 12 45 45 H 1.08999 * 109.54081 * 270.55368 * 18 9 7 46 46 H 1.08998 * 109.54577 * 30.83234 * 18 9 7 47 47 H 0.97004 * 119.99813 * 179.97438 * 23 22 20 48 48 H 1.08998 * 110.98947 * 277.56606 * 28 5 3 49 49 H 1.08998 * 111.02513 * 153.76239 * 28 5 3 50 50 H 1.08994 * 110.37232 * 204.10196 * 29 28 5 51 51 H 1.08998 * 110.46475 * 81.80994 * 29 28 5 52 52 H 1.09000 * 109.47498 * 58.62967 * 31 30 3 53 53 H 1.09001 * 109.47361 * 178.62920 * 31 30 3 54 54 H 1.09002 * 109.47328 * 298.62627 * 31 30 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6176 1.9850 0.8458 5 6 1.6498 2.1372 -1.3216 6 1 1.4812 1.4020 -2.1084 7 6 0.4313 3.0028 -1.1289 8 8 -0.0964 3.0732 -0.0393 9 7 -0.0721 3.6986 -2.1677 10 6 0.5583 3.6221 -3.4688 11 6 1.5319 4.7507 -3.7076 12 6 0.8546 6.0745 -3.9881 13 1 1.5817 6.8451 -4.2441 14 6 -0.1505 5.8188 -5.1362 15 6 -1.4519 5.4035 -4.4204 16 6 -1.2228 5.7207 -2.9634 17 1 -2.0182 6.4097 -2.6791 18 6 -1.2836 4.5599 -1.9808 19 7 0.0466 6.4658 -2.8033 20 6 0.3968 7.3214 -1.7929 21 1 1.3643 7.8011 -1.8027 22 6 -0.4917 7.5719 -0.7563 23 7 -1.6710 6.9875 -0.7447 24 14 -0.0143 8.7394 0.6214 25 1 0.2659 10.0838 0.0563 26 1 -1.1290 8.8349 1.5980 27 1 1.2001 8.2272 1.3058 28 6 2.8949 3.0061 -1.6406 29 6 4.0460 2.1003 -1.1364 30 7 3.5122 1.4541 0.0814 31 6 4.0418 0.0919 0.2298 32 1 -0.3633 0.5955 0.8377 33 1 -0.3634 0.4276 -0.9344 34 1 -0.3633 -1.0231 0.0970 35 1 1.8932 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 1.0943 2.6762 -3.5471 38 1 -0.2133 3.6539 -4.2381 39 1 2.1652 4.4948 -4.5570 40 1 2.1621 4.8601 -2.8249 41 1 -0.3077 6.7292 -5.7145 42 1 0.2037 5.0138 -5.7802 43 1 -1.6311 4.3362 -4.5511 44 1 -2.2944 5.9785 -4.8044 45 1 -2.1818 3.9709 -2.1667 46 1 -1.3032 4.9455 -0.9615 47 1 -2.2918 7.1623 -0.0201 48 1 2.8671 3.9457 -1.0887 49 1 2.9813 3.1873 -2.7119 50 1 4.9229 2.7006 -0.8941 51 1 4.2964 1.3495 -1.8858 52 1 3.7237 -0.5160 -0.6171 53 1 5.1308 0.1271 0.2630 54 1 3.6642 -0.3461 1.1537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045780599.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:49 Heat of formation + Delta-G solvation = 4.195217 kcal Electronic energy + Delta-G solvation = -33075.135612 eV Core-core repulsion = 29240.529986 eV Total energy + Delta-G solvation = -3834.605627 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.91555 -40.53984 -38.93982 -35.99840 -34.77578 -34.22988 -33.69251 -32.61505 -31.25855 -29.33637 -28.41837 -27.50642 -26.76936 -25.65666 -24.55016 -23.42134 -22.58959 -21.34131 -20.99359 -20.38824 -19.38807 -18.71680 -18.11335 -17.31809 -16.74933 -16.64639 -16.25342 -16.05231 -15.92517 -15.62379 -15.52283 -14.94181 -14.69733 -14.44347 -14.20776 -14.05742 -13.76055 -13.59136 -13.51142 -13.18953 -13.05959 -12.96961 -12.80579 -12.68735 -12.63313 -12.49532 -12.46157 -12.31462 -12.26524 -12.16101 -12.05103 -12.03156 -11.72903 -11.53148 -11.39819 -11.36757 -11.24157 -10.85314 -10.66904 -10.27981 -9.29045 -9.16943 -8.77101 -7.74957 -5.10444 1.39466 1.43569 1.47354 1.84140 2.31441 2.49554 3.01093 3.36732 3.52895 3.58416 3.67464 3.78668 3.96374 4.04456 4.11322 4.15720 4.19072 4.25098 4.27404 4.31651 4.41027 4.50130 4.52264 4.57321 4.62152 4.64437 4.75400 4.78542 4.83465 4.85572 4.88629 4.94441 4.96930 5.03613 5.07717 5.11345 5.14022 5.18653 5.19752 5.28063 5.30758 5.38258 5.41312 5.44327 5.53369 5.65871 5.76112 5.92606 6.01680 6.04452 6.19751 6.35487 6.84579 7.15807 7.48558 7.83741 8.55946 9.27712 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.012032 B = 0.004914 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.572861 B = 5696.152635 C = 6355.030453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.087 3.913 4 H 0.054 0.946 5 C -0.111 4.111 6 H 0.122 0.878 7 C 0.509 3.491 8 O -0.595 6.595 9 N -0.590 5.590 10 C 0.101 3.899 11 C -0.153 4.153 12 C 0.137 3.863 13 H 0.059 0.941 14 C -0.116 4.116 15 C -0.118 4.118 16 C 0.153 3.847 17 H 0.048 0.952 18 C 0.133 3.867 19 N -0.600 5.600 20 C -0.209 4.209 21 H 0.074 0.926 22 C -0.062 4.062 23 N -0.933 5.933 24 Si 0.958 3.042 25 H -0.274 1.274 26 H -0.300 1.300 27 H -0.294 1.294 28 C -0.114 4.114 29 C 0.048 3.952 30 N -0.553 5.553 31 C 0.017 3.983 32 H 0.031 0.969 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.029 0.971 46 H 0.072 0.928 47 H 0.240 0.760 48 H 0.039 0.961 49 H 0.110 0.890 50 H 0.083 0.917 51 H 0.077 0.923 52 H 0.048 0.952 53 H 0.076 0.924 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.683 -15.757 -10.873 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C -0.021 4.021 4 H 0.072 0.928 5 C -0.133 4.133 6 H 0.140 0.860 7 C 0.298 3.702 8 O -0.477 6.477 9 N -0.320 5.320 10 C -0.021 4.021 11 C -0.193 4.193 12 C 0.031 3.969 13 H 0.077 0.923 14 C -0.154 4.154 15 C -0.156 4.156 16 C 0.046 3.954 17 H 0.066 0.934 18 C 0.010 3.990 19 N -0.322 5.322 20 C -0.339 4.339 21 H 0.092 0.908 22 C -0.255 4.255 23 N -0.583 5.583 24 Si 0.789 3.211 25 H -0.200 1.200 26 H -0.227 1.227 27 H -0.222 1.222 28 C -0.152 4.152 29 C -0.079 4.079 30 N -0.277 5.277 31 C -0.131 4.131 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.049 0.951 48 H 0.058 0.942 49 H 0.128 0.872 50 H 0.101 0.899 51 H 0.095 0.905 52 H 0.066 0.934 53 H 0.094 0.906 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.504 -15.276 -9.675 20.428 hybrid contribution -0.679 0.927 1.056 1.561 sum 8.825 -14.348 -8.619 18.922 Atomic orbital electron populations 1.21654 0.96089 1.01393 1.00776 1.22034 0.95754 0.95084 1.03363 1.22243 0.87733 0.96336 0.95833 0.92755 1.22503 0.92950 0.97717 1.00144 0.85996 1.20878 0.85141 0.80662 0.83563 1.90621 1.62971 1.67082 1.26992 1.48462 1.29168 1.44192 1.10199 1.21188 0.97456 0.98787 0.84697 1.22071 0.98784 0.96319 1.02135 1.21471 0.93526 0.94495 0.87423 0.92314 1.22619 0.94242 1.01807 0.96762 1.21887 0.98542 1.01257 0.93870 1.20426 0.90691 0.92103 0.92183 0.93380 1.22719 0.83574 0.89697 1.03032 1.45119 1.14206 1.49692 1.23216 1.19096 0.99128 1.16554 0.99082 0.90783 1.25256 0.97067 1.02497 1.00633 1.69953 1.08064 1.47031 1.33231 0.85448 0.76121 0.79695 0.79862 1.20020 1.22666 1.22179 1.22891 0.92422 0.97085 1.02823 1.23104 0.97173 0.97042 0.90572 1.63679 1.05066 1.20301 1.38627 1.22650 1.00631 0.88152 1.01651 0.95003 0.94336 0.90909 0.89654 0.90172 0.89030 0.88890 0.87944 0.93681 0.92160 0.87784 0.89916 0.92052 0.95279 0.90961 0.95081 0.94172 0.87188 0.89903 0.90481 0.93392 0.90565 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 8.87 71.98 0.64 -3.13 16 2 C -0.12 -2.85 4.05 30.59 0.12 -2.72 16 3 C 0.09 2.59 2.93 45.26 0.13 2.72 16 4 H 0.05 2.20 6.81 -2.39 -0.02 2.19 16 5 C -0.11 -3.23 1.24 -10.36 -0.01 -3.25 16 6 H 0.12 2.78 6.94 -2.39 -0.02 2.76 16 7 C 0.51 20.68 6.18 87.65 0.54 21.22 16 8 O -0.60 -30.44 14.26 -3.02 -0.04 -30.48 16 9 N -0.59 -22.89 2.88 -822.74 -2.37 -25.26 16 10 C 0.10 2.80 4.50 86.03 0.39 3.19 16 11 C -0.15 -4.32 3.75 29.38 0.11 -4.21 16 12 C 0.14 4.76 4.08 44.61 0.18 4.94 16 13 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 14 C -0.12 -3.17 6.02 31.59 0.19 -2.98 16 15 C -0.12 -3.81 5.78 30.32 0.18 -3.64 16 16 C 0.15 6.85 1.94 43.74 0.09 6.94 16 17 H 0.05 2.63 6.13 -2.39 -0.01 2.62 16 18 C 0.13 6.27 5.68 85.47 0.49 6.76 16 19 N -0.60 -28.35 2.69 -650.44 -1.75 -30.10 16 20 C -0.21 -11.53 10.40 84.03 0.87 -10.66 16 21 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 22 C -0.06 -3.56 5.47 84.86 0.46 -3.09 16 23 N -0.93 -56.09 8.15 21.65 0.18 -55.92 16 24 Si 0.96 48.58 29.55 68.60 2.03 50.60 16 25 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 27 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 28 C -0.11 -3.05 4.46 31.98 0.14 -2.91 16 29 C 0.05 1.04 6.73 86.78 0.58 1.63 16 30 N -0.55 -14.13 5.44 -886.54 -4.83 -18.96 16 31 C 0.02 0.30 8.26 127.69 1.05 1.35 16 32 H 0.03 1.05 7.88 -2.38 -0.02 1.03 16 33 H 0.04 1.09 7.08 -2.39 -0.02 1.08 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.51 6.84 -2.38 -0.02 1.50 16 36 H 0.08 1.67 6.40 -2.39 -0.02 1.66 16 37 H 0.09 1.91 5.61 -2.39 -0.01 1.90 16 38 H 0.09 2.33 3.93 -2.39 -0.01 2.32 16 39 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.04 1.52 5.57 -2.39 -0.01 1.51 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.10 2.00 7.38 -2.38 -0.02 1.98 16 43 H 0.08 2.28 6.16 -2.38 -0.01 2.27 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.07 4.30 5.33 -2.39 -0.01 4.29 16 47 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 48 H 0.04 1.44 7.64 -2.39 -0.02 1.42 16 49 H 0.11 2.34 5.43 -2.39 -0.01 2.33 16 50 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.08 1.20 7.80 -2.39 -0.02 1.19 16 52 H 0.05 0.69 6.51 -2.39 -0.02 0.68 16 53 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 54 H 0.07 1.24 6.73 -2.39 -0.02 1.22 16 Total: -1.00 -75.03 372.07 0.27 -74.76 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.89 Total: 23.20 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 6.16 Total: 12.16 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -8.77 Total: -130.24 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.04 Total: -30.48 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.60 kcal Total: -75.03 0.27 -74.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045780599.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.953 kcal (2) G-P(sol) polarization free energy of solvation -75.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds