Wall clock time and date at job start Tue Mar 31 2020 18:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47239 * 2 1 4 4 C 1.50701 * 112.84841 * 297.32947 * 3 2 1 5 5 O 1.21280 * 120.00576 * 105.31481 * 4 3 2 6 6 N 1.34781 * 119.99442 * 285.31134 * 4 3 2 7 7 C 1.47088 * 120.87844 * 184.83733 * 6 4 3 8 8 C 1.53233 * 108.51939 * 231.20751 * 7 6 4 9 9 N 1.46897 * 109.34539 * 306.17074 * 8 7 6 10 10 C 1.46900 * 111.00543 * 187.25434 * 9 8 7 11 11 H 1.08997 * 110.63702 * 297.75184 * 10 9 8 12 12 C 1.55161 * 110.71713 * 60.89295 * 10 9 8 13 13 C 1.54906 * 101.58117 * 153.86989 * 12 10 9 14 14 N 1.47431 * 104.83027 * 322.98563 * 13 12 10 15 15 C 1.36937 * 125.64874 * 204.09184 * 14 13 12 16 16 H 1.07998 * 119.99683 * 164.17019 * 15 14 13 17 17 C 1.38815 * 119.99814 * 344.17687 * 15 14 13 18 18 N 1.31620 * 119.99904 * 351.65015 * 17 15 14 19 19 Si 1.86799 * 119.99592 * 171.65543 * 17 15 14 20 20 H 1.48499 * 109.47420 * 84.98595 * 19 17 15 21 21 H 1.48507 * 109.47213 * 324.98362 * 19 17 15 22 22 H 1.48500 * 109.47045 * 204.98259 * 19 17 15 23 23 C 1.47024 * 108.70141 * 24.36070 * 14 13 12 24 24 C 1.46904 * 111.26466 * 63.10400 * 9 8 7 25 25 C 1.47080 * 120.88249 * 4.86337 * 6 4 3 26 26 C 1.53786 * 113.61313 * 68.51842 * 3 2 1 27 27 C 1.53957 * 87.01533 * 89.23329 * 26 3 2 28 28 C 1.53775 * 87.11479 * 25.36282 * 27 26 3 29 29 H 1.09004 * 109.47552 * 65.00609 * 1 2 3 30 30 H 1.08999 * 109.47135 * 185.00980 * 1 2 3 31 31 H 1.09005 * 109.47036 * 305.00281 * 1 2 3 32 32 H 1.08997 * 109.47176 * 240.00456 * 2 1 3 33 33 H 1.09003 * 109.47480 * 120.00351 * 2 1 3 34 34 H 1.09004 * 109.62560 * 111.49942 * 7 6 4 35 35 H 1.08996 * 109.62557 * 350.92340 * 7 6 4 36 36 H 1.09004 * 109.49037 * 186.21291 * 8 7 6 37 37 H 1.09003 * 109.49582 * 66.13611 * 8 7 6 38 38 H 1.09003 * 111.00282 * 35.78941 * 12 10 9 39 39 H 1.08999 * 111.03306 * 271.95774 * 12 10 9 40 40 H 1.09004 * 110.36243 * 204.15640 * 13 12 10 41 41 H 1.08993 * 110.46217 * 81.87472 * 13 12 10 42 42 H 0.97005 * 119.99235 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.88455 * 118.12897 * 23 14 13 44 44 H 1.09002 * 109.88056 * 239.29342 * 23 14 13 45 45 H 1.08996 * 109.49223 * 56.86192 * 24 9 8 46 46 H 1.09004 * 109.48626 * 176.93851 * 24 9 8 47 47 H 1.08999 * 109.62500 * 248.49706 * 25 6 4 48 48 H 1.08994 * 109.62656 * 8.88673 * 25 6 4 49 49 H 1.09004 * 113.61386 * 203.74882 * 26 3 2 50 50 H 1.08996 * 113.61702 * 334.65427 * 26 3 2 51 51 H 1.09004 * 113.53566 * 270.80654 * 27 26 3 52 52 H 1.09000 * 113.74103 * 139.94287 * 27 26 3 53 53 H 1.09005 * 113.61827 * 220.09067 * 28 27 26 54 54 H 1.09003 * 113.69155 * 89.19429 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6339 2.2067 -1.2337 5 8 0.7539 3.0388 -1.1695 6 7 2.2489 1.9655 -2.4086 7 6 1.9430 2.7717 -3.6002 8 6 1.6172 1.8234 -4.7589 9 7 2.7155 0.8621 -4.9245 10 6 2.5235 0.0459 -6.1308 11 1 1.6101 -0.5438 -6.0542 12 6 2.4958 0.9391 -7.3992 13 6 2.9714 -0.0536 -8.4891 14 7 3.9932 -0.8827 -7.8243 15 6 5.0043 -1.5596 -8.4526 16 1 5.8450 -1.9258 -7.8821 17 6 4.9487 -1.7747 -9.8229 18 7 3.8552 -1.4768 -10.4920 19 14 6.4260 -2.4872 -10.7170 20 1 6.3922 -3.9690 -10.6264 21 1 7.6744 -1.9813 -10.0917 22 1 6.3858 -2.0776 -12.1438 23 6 3.7430 -0.8678 -6.3756 24 6 2.8660 0.0147 -3.7340 25 6 3.2431 0.8889 -2.5332 26 6 1.7588 2.1953 1.3112 27 6 3.1131 1.6624 1.8135 28 6 3.5350 1.5674 0.3378 29 1 -0.3634 0.4342 -0.9314 30 1 -0.3633 -1.0237 0.0897 31 1 -0.3633 0.5895 0.8418 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.8068 3.3837 -3.8598 35 1 1.0844 3.4121 -3.3985 36 1 1.4960 2.3988 -5.6768 37 1 0.6938 1.2867 -4.5411 38 1 3.1882 1.7755 -7.3033 39 1 1.4858 1.2927 -7.6066 40 1 3.4087 0.4862 -9.3290 41 1 2.1415 -0.6736 -8.8281 42 1 3.8163 -1.6275 -11.4495 43 1 3.5281 -1.8776 -6.0260 44 1 4.6130 -0.4698 -5.8532 45 1 1.9253 -0.4968 -3.5304 46 1 3.6505 -0.7216 -3.9085 47 1 4.2318 1.3200 -2.6903 48 1 3.2463 0.2866 -1.6248 49 1 1.7318 3.2788 1.1955 50 1 0.9034 1.8061 1.8634 51 1 3.0428 0.6950 2.3108 52 1 3.6867 2.3916 2.3855 53 1 4.1115 0.6719 0.1052 54 1 3.9947 2.4782 -0.0458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046057105.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:39 Heat of formation + Delta-G solvation = 2.396181 kcal Electronic energy + Delta-G solvation = -30861.040364 eV Core-core repulsion = 27026.356726 eV Total energy + Delta-G solvation = -3834.683639 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.06928 -40.30101 -38.90856 -37.94480 -35.58883 -33.85049 -33.37072 -32.35301 -31.06370 -29.49492 -28.12549 -26.96932 -26.53802 -25.78591 -24.58625 -23.76067 -22.72165 -21.89964 -21.15642 -20.50120 -19.38614 -18.85504 -17.90713 -17.37246 -16.94520 -16.71986 -16.58760 -16.05482 -16.03738 -15.88352 -15.44658 -15.35974 -14.89192 -14.77451 -14.58568 -14.22328 -14.00915 -13.65328 -13.52852 -13.45581 -13.32118 -13.23000 -12.81106 -12.71832 -12.68833 -12.61421 -12.50999 -12.39352 -12.27986 -12.15362 -12.01042 -11.91951 -11.80820 -11.74772 -11.61302 -11.53692 -11.27247 -11.06537 -10.67926 -10.46441 -9.81829 -9.28748 -8.80711 -7.88542 -5.25614 1.47136 1.49185 1.58008 1.59856 1.95028 2.49163 2.78883 3.32843 3.36550 3.42537 3.67644 3.68521 3.75198 3.80092 3.88272 3.94894 4.04449 4.07856 4.19265 4.25784 4.28185 4.37458 4.39160 4.44393 4.46901 4.54967 4.62180 4.70584 4.74063 4.80776 4.82983 4.83176 4.87720 4.90468 4.98053 4.99349 5.00792 5.03887 5.09137 5.11318 5.14092 5.15658 5.30259 5.35606 5.42864 5.44829 5.53717 5.59251 5.70665 6.03893 6.08072 6.22423 6.42459 7.08324 7.14587 7.76318 8.44760 9.24157 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.023255 B = 0.002462 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.730752 B =11370.100322 C =11843.408089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.106 4.106 4 C 0.528 3.472 5 O -0.587 6.587 6 N -0.609 5.609 7 C 0.120 3.880 8 C 0.049 3.951 9 N -0.526 5.526 10 C 0.090 3.910 11 H 0.041 0.959 12 C -0.117 4.117 13 C 0.181 3.819 14 N -0.623 5.623 15 C -0.244 4.244 16 H 0.078 0.922 17 C -0.063 4.063 18 N -0.949 5.949 19 Si 0.978 3.022 20 H -0.282 1.282 21 H -0.269 1.269 22 H -0.294 1.294 23 C 0.148 3.852 24 C 0.037 3.963 25 C 0.113 3.887 26 C -0.118 4.118 27 C -0.127 4.127 28 C -0.124 4.124 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.025 0.975 41 H -0.001 1.001 42 H 0.248 0.752 43 H 0.016 0.984 44 H 0.041 0.959 45 H 0.034 0.966 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.118 0.882 49 H 0.066 0.934 50 H 0.076 0.924 51 H 0.102 0.898 52 H 0.077 0.923 53 H 0.098 0.902 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 5.251 25.700 26.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 C -0.109 4.109 4 C 0.318 3.682 5 O -0.467 6.467 6 N -0.342 5.342 7 C -0.003 4.003 8 C -0.080 4.080 9 N -0.251 5.251 10 C -0.019 4.019 11 H 0.059 0.941 12 C -0.155 4.155 13 C 0.056 3.944 14 N -0.350 5.350 15 C -0.373 4.373 16 H 0.096 0.904 17 C -0.256 4.256 18 N -0.597 5.597 19 Si 0.806 3.194 20 H -0.209 1.209 21 H -0.194 1.194 22 H -0.221 1.221 23 C 0.022 3.978 24 C -0.092 4.092 25 C -0.009 4.009 26 C -0.156 4.156 27 C -0.165 4.165 28 C -0.162 4.162 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.044 0.956 41 H 0.017 0.983 42 H 0.057 0.943 43 H 0.034 0.966 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.113 0.887 47 H 0.102 0.898 48 H 0.135 0.865 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.121 0.879 52 H 0.096 0.904 53 H 0.116 0.884 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.794 5.892 25.491 26.312 hybrid contribution -0.505 -0.746 -1.335 1.611 sum -3.299 5.145 24.155 24.917 Atomic orbital electron populations 1.21737 0.96011 1.02204 1.00890 1.21451 0.95820 0.91698 1.04390 1.22295 0.99618 0.97194 0.91842 1.21067 0.80009 0.82361 0.84770 1.90640 1.32554 1.37607 1.85924 1.48272 1.41868 1.34579 1.09451 1.21637 1.02049 0.93259 0.83389 1.22414 0.91466 0.94756 0.99345 1.61963 1.43532 1.17624 1.01988 1.22357 0.96078 0.93542 0.89884 0.94064 1.22856 1.01107 0.97655 0.93917 1.21100 0.90005 0.90170 0.93166 1.44701 1.32363 1.55893 1.02000 1.19355 0.97768 1.28826 0.91396 0.90374 1.25758 1.00083 1.01840 0.97950 1.70146 1.27695 1.54556 1.07271 0.85116 0.79077 0.78009 0.77217 1.20900 1.19396 1.22058 1.21334 0.95732 0.95526 0.85181 1.22577 1.01253 0.95494 0.89850 1.22172 0.91818 0.88240 0.98646 1.22873 0.99382 0.99340 0.94018 1.22854 0.95260 1.02644 0.95700 1.23088 0.92470 1.03480 0.97150 0.95583 0.91024 0.92350 0.90620 0.87873 0.90151 0.89836 0.88832 0.95407 0.90777 0.90254 0.95625 0.98282 0.94261 0.96611 0.94145 0.94761 0.88740 0.89796 0.86455 0.91538 0.90508 0.87911 0.90422 0.88356 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.59 71.98 0.69 -1.71 16 2 C -0.10 -1.20 4.94 30.59 0.15 -1.05 16 3 C -0.11 -1.65 0.28 -52.40 -0.01 -1.67 16 4 C 0.53 12.26 5.82 87.66 0.51 12.77 16 5 O -0.59 -18.38 15.84 -3.03 -0.05 -18.43 16 6 N -0.61 -13.02 3.01 -817.93 -2.46 -15.48 16 7 C 0.12 2.74 6.61 86.35 0.57 3.31 16 8 C 0.05 1.18 5.47 86.38 0.47 1.65 16 9 N -0.53 -14.03 4.46 -863.06 -3.85 -17.88 16 10 C 0.09 3.01 2.64 46.11 0.12 3.14 16 11 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 12 C -0.12 -4.25 5.39 31.99 0.17 -4.07 16 13 C 0.18 8.95 5.36 86.85 0.47 9.42 16 14 N -0.62 -32.20 3.39 -691.96 -2.35 -34.55 16 15 C -0.24 -13.74 10.21 84.03 0.86 -12.88 16 16 H 0.08 4.20 7.84 -2.91 -0.02 4.17 16 17 C -0.06 -3.57 5.39 84.86 0.46 -3.12 16 18 N -0.95 -57.43 10.89 21.65 0.24 -57.19 16 19 Si 0.98 45.53 29.56 68.60 2.03 47.56 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 C 0.15 5.98 5.72 86.73 0.50 6.47 16 24 C 0.04 0.80 5.44 86.38 0.47 1.27 16 25 C 0.11 1.95 5.39 86.35 0.47 2.41 16 26 C -0.12 -1.79 6.71 31.18 0.21 -1.58 16 27 C -0.13 -1.19 7.74 31.18 0.24 -0.95 16 28 C -0.12 -1.38 5.64 31.12 0.18 -1.20 16 29 H 0.02 0.55 7.66 -2.39 -0.02 0.53 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.93 6.81 -2.38 -0.02 0.91 16 32 H 0.08 0.92 6.11 -2.39 -0.01 0.91 16 33 H 0.10 0.80 7.31 -2.39 -0.02 0.78 16 34 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.08 2.08 7.04 -2.39 -0.02 2.07 16 36 H 0.09 2.21 6.81 -2.38 -0.02 2.19 16 37 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.08 2.51 7.93 -2.39 -0.02 2.49 16 40 H 0.03 1.41 7.31 -2.39 -0.02 1.39 16 41 H 0.00 -0.05 7.94 -2.39 -0.02 -0.06 16 42 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 43 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.04 1.60 7.68 -2.39 -0.02 1.58 16 45 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.09 2.06 6.76 -2.39 -0.02 2.04 16 47 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.12 1.44 3.26 -2.39 -0.01 1.44 16 49 H 0.07 1.28 7.90 -2.38 -0.02 1.26 16 50 H 0.08 1.09 6.90 -2.39 -0.02 1.08 16 51 H 0.10 0.62 7.60 -2.38 -0.02 0.60 16 52 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 53 H 0.10 0.72 7.28 -2.38 -0.02 0.70 16 54 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 Total: -1.00 -71.38 396.62 0.94 -70.44 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.87 Total: 13.31 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 6.51 Total: 12.22 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -8.42 Total: -125.10 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.05 Total: -18.43 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -71.38 0.94 -70.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046057105.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.836 kcal (2) G-P(sol) polarization free energy of solvation -71.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds