Wall clock time and date at job start Tue Mar 31 2020 18:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.50694 * 112.85031 * 304.95007 * 3 2 1 5 5 O 1.21285 * 120.00461 * 110.79269 * 4 3 2 6 6 N 1.34775 * 120.00155 * 290.78866 * 4 3 2 7 7 C 1.47082 * 120.88624 * 174.95997 * 6 4 3 8 8 C 1.53239 * 108.52209 * 231.21082 * 7 6 4 9 9 N 1.46895 * 109.33854 * 306.16653 * 8 7 6 10 10 C 1.46900 * 110.99912 * 187.25552 * 9 8 7 11 11 H 1.09002 * 110.88640 * 303.88242 * 10 9 8 12 12 C 1.55159 * 111.00667 * 180.02562 * 10 9 8 13 13 C 1.54320 * 102.94280 * 206.42542 * 12 10 9 14 14 N 1.47022 * 107.27233 * 22.19093 * 13 12 10 15 15 C 1.36940 * 125.64605 * 181.02299 * 14 13 12 16 16 H 1.07997 * 119.99679 * 185.28633 * 15 14 13 17 17 C 1.38812 * 120.00084 * 5.28480 * 15 14 13 18 18 N 1.31616 * 119.99874 * 5.73317 * 17 15 14 19 19 Si 1.86803 * 119.99781 * 185.72912 * 17 15 14 20 20 H 1.48499 * 109.47000 * 84.99900 * 19 17 15 21 21 H 1.48500 * 109.46914 * 324.99488 * 19 17 15 22 22 H 1.48498 * 109.46896 * 204.99795 * 19 17 15 23 23 C 1.47419 * 108.70276 * 1.28742 * 14 13 12 24 24 C 1.46898 * 111.26944 * 63.10556 * 9 8 7 25 25 C 1.47079 * 120.87877 * 354.98478 * 6 4 3 26 26 C 1.53789 * 113.69011 * 76.21641 * 3 2 1 27 27 C 1.53776 * 87.08078 * 89.12452 * 26 3 2 28 28 C 1.53778 * 113.61469 * 173.74921 * 3 2 1 29 29 H 1.08998 * 109.47030 * 305.18067 * 1 2 3 30 30 H 1.08995 * 109.47236 * 65.18518 * 1 2 3 31 31 H 1.09007 * 109.46963 * 185.18974 * 1 2 3 32 32 H 1.09000 * 109.46563 * 240.00357 * 2 1 3 33 33 H 1.08995 * 109.47136 * 120.00365 * 2 1 3 34 34 H 1.08997 * 109.62881 * 111.49549 * 7 6 4 35 35 H 1.09007 * 109.62517 * 350.91877 * 7 6 4 36 36 H 1.09008 * 109.48817 * 186.20982 * 8 7 6 37 37 H 1.08994 * 109.49318 * 66.12798 * 8 7 6 38 38 H 1.09000 * 110.72070 * 88.05658 * 12 10 9 39 39 H 1.08999 * 110.87005 * 324.85711 * 12 10 9 40 40 H 1.08996 * 109.88026 * 262.77380 * 13 12 10 41 41 H 1.09001 * 109.88170 * 141.60834 * 13 12 10 42 42 H 0.97004 * 120.00052 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.36909 * 94.48241 * 23 14 13 44 44 H 1.08997 * 110.36822 * 216.80353 * 23 14 13 45 45 H 1.09007 * 109.49159 * 56.85841 * 24 9 8 46 46 H 1.08998 * 109.49433 * 176.93204 * 24 9 8 47 47 H 1.09004 * 109.62905 * 248.50024 * 25 6 4 48 48 H 1.08996 * 109.63239 * 9.08435 * 25 6 4 49 49 H 1.09000 * 113.61697 * 203.67764 * 26 3 2 50 50 H 1.09006 * 113.60953 * 334.57817 * 26 3 2 51 51 H 1.09001 * 113.61805 * 270.88675 * 27 26 3 52 52 H 1.08996 * 113.61225 * 139.98074 * 27 26 3 53 53 H 1.09000 * 113.61303 * 25.35073 * 28 3 2 54 54 H 1.09002 * 113.61268 * 156.25631 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4850 2.2594 -1.1382 5 8 0.6956 3.1527 -0.9152 6 7 1.8660 1.9974 -2.4042 7 6 1.2555 2.7071 -3.5386 8 6 0.7831 1.6709 -4.5639 9 7 1.9033 0.7875 -4.9142 10 6 1.5405 -0.1098 -6.0193 11 1 0.6492 -0.6874 -5.7742 12 6 2.7233 -1.0433 -6.3890 13 6 2.4564 -1.3680 -7.8739 14 7 1.6001 -0.2986 -8.4074 15 6 1.1191 -0.2252 -9.6874 16 1 0.5665 0.6457 -10.0075 17 6 1.3417 -1.2703 -10.5735 18 7 1.9152 -2.3781 -10.1538 19 14 0.8271 -1.1044 -12.3616 20 1 1.9006 -0.4177 -13.1239 21 1 -0.4249 -0.3101 -12.4447 22 1 0.5965 -2.4536 -12.9375 23 6 1.3503 0.6849 -7.3380 24 6 2.3657 0.0249 -3.7470 25 6 2.9029 0.9936 -2.6881 26 6 1.9296 2.1369 1.3677 27 6 3.3320 1.5849 1.6731 28 6 3.5659 1.5564 0.1534 29 1 -0.3633 0.5921 0.8399 30 1 -0.3633 0.4313 -0.9327 31 1 -0.3633 -1.0235 0.0930 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.9922 3.3666 -3.9972 35 1 0.4040 3.2914 -3.1895 36 1 0.4283 2.1810 -5.4595 37 1 -0.0267 1.0795 -4.1367 38 1 2.7015 -1.9509 -5.7857 39 1 3.6764 -0.5274 -6.2724 40 1 1.9465 -2.3277 -7.9576 41 1 3.3981 -1.3971 -8.4220 42 1 2.0711 -3.1083 -10.7731 43 1 2.0694 1.5018 -7.3983 44 1 0.3324 1.0687 -7.4057 45 1 1.5338 -0.5437 -3.3312 46 1 3.1586 -0.6589 -4.0500 47 1 3.7980 1.4884 -3.0650 48 1 3.1406 0.4449 -1.7768 49 1 1.8928 3.2244 1.3036 50 1 1.1489 1.7228 2.0059 51 1 3.3218 0.5962 2.1319 52 1 3.9737 2.2907 2.2004 53 1 4.1062 0.6738 -0.1887 54 1 3.9764 2.4853 -0.2427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046057106.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:42 Heat of formation + Delta-G solvation = 3.831107 kcal Electronic energy + Delta-G solvation = -30908.441418 eV Core-core repulsion = 27073.820002 eV Total energy + Delta-G solvation = -3834.621416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.08235 -40.26451 -38.89863 -37.96441 -35.59024 -33.86551 -33.38538 -32.36594 -30.96391 -29.64084 -27.81019 -27.17974 -26.52463 -25.78281 -24.57684 -23.80331 -22.70958 -21.76922 -21.23430 -20.48362 -19.41262 -18.86006 -17.89397 -17.36286 -16.96674 -16.73924 -16.53020 -16.04931 -16.00377 -15.90107 -15.48219 -15.29828 -14.89751 -14.71492 -14.51672 -14.19359 -13.88929 -13.86410 -13.63437 -13.48673 -13.32961 -13.21518 -12.88464 -12.74423 -12.69491 -12.61615 -12.47019 -12.36163 -12.27657 -12.11960 -11.98708 -11.88350 -11.82735 -11.67951 -11.59873 -11.49561 -11.26079 -11.06975 -10.71953 -10.47894 -9.81442 -9.28708 -8.89074 -7.83670 -5.21932 1.45610 1.48044 1.55816 1.60019 1.95757 2.47724 2.79546 3.32795 3.37271 3.43642 3.63204 3.69202 3.78317 3.82922 3.90594 3.97226 4.00121 4.13261 4.20317 4.23970 4.28270 4.36804 4.40739 4.43713 4.46043 4.54730 4.62884 4.71437 4.73231 4.81275 4.82902 4.84034 4.87628 4.90309 4.97437 4.99062 5.01992 5.04559 5.10554 5.11921 5.15614 5.20438 5.29519 5.33532 5.42553 5.44831 5.54981 5.62213 5.79344 6.01939 6.09470 6.22828 6.43660 7.10165 7.15082 7.77395 8.41790 9.24486 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.002390 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.174312 B =11714.807471 C =12017.795033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.107 4.107 4 C 0.528 3.472 5 O -0.589 6.589 6 N -0.609 5.609 7 C 0.122 3.878 8 C 0.048 3.952 9 N -0.524 5.524 10 C 0.088 3.912 11 H 0.038 0.962 12 C -0.114 4.114 13 C 0.180 3.820 14 N -0.628 5.628 15 C -0.243 4.243 16 H 0.079 0.921 17 C -0.065 4.065 18 N -0.949 5.949 19 Si 0.978 3.022 20 H -0.285 1.285 21 H -0.270 1.270 22 H -0.293 1.293 23 C 0.147 3.853 24 C 0.037 3.963 25 C 0.110 3.890 26 C -0.119 4.119 27 C -0.127 4.127 28 C -0.124 4.124 29 H 0.053 0.947 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.027 0.973 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.025 0.975 41 H -0.003 1.003 42 H 0.247 0.753 43 H 0.031 0.969 44 H 0.032 0.968 45 H 0.035 0.965 46 H 0.104 0.896 47 H 0.085 0.915 48 H 0.120 0.880 49 H 0.066 0.934 50 H 0.074 0.926 51 H 0.103 0.897 52 H 0.077 0.923 53 H 0.101 0.899 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 4.498 26.143 26.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.131 4.131 3 C -0.110 4.110 4 C 0.318 3.682 5 O -0.469 6.469 6 N -0.341 5.341 7 C -0.001 4.001 8 C -0.080 4.080 9 N -0.249 5.249 10 C -0.021 4.021 11 H 0.056 0.944 12 C -0.152 4.152 13 C 0.055 3.945 14 N -0.354 5.354 15 C -0.372 4.372 16 H 0.097 0.903 17 C -0.258 4.258 18 N -0.598 5.598 19 Si 0.806 3.194 20 H -0.212 1.212 21 H -0.195 1.195 22 H -0.220 1.220 23 C 0.022 3.978 24 C -0.091 4.091 25 C -0.012 4.012 26 C -0.157 4.157 27 C -0.164 4.164 28 C -0.162 4.162 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.046 0.954 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.043 0.957 41 H 0.015 0.985 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.122 0.878 47 H 0.103 0.897 48 H 0.138 0.862 49 H 0.085 0.915 50 H 0.093 0.907 51 H 0.122 0.878 52 H 0.096 0.904 53 H 0.120 0.880 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.597 5.149 25.920 26.823 hybrid contribution -1.339 -0.349 -1.451 2.005 sum 3.258 4.800 24.469 25.148 Atomic orbital electron populations 1.21735 0.96375 1.02175 1.00616 1.21434 0.95447 0.91680 1.04556 1.22308 0.98758 0.96786 0.93170 1.21066 0.79929 0.83230 0.83950 1.90644 1.37389 1.34337 1.84556 1.48264 1.39980 1.40477 1.05425 1.21582 0.98851 0.94079 0.85574 1.22401 0.91747 0.95140 0.98755 1.61925 1.34980 1.21001 1.07042 1.22563 0.96460 0.92789 0.90313 0.94421 1.22733 0.98038 0.98780 0.95664 1.20978 0.92144 0.91328 0.90063 1.44733 1.57996 1.24645 1.08062 1.19416 1.28991 1.01772 0.87064 0.90277 1.25652 1.01868 0.95747 1.02575 1.70168 1.49631 1.05499 1.34469 0.85104 0.78110 0.76466 0.79711 1.21198 1.19514 1.21964 1.21605 0.97475 0.91891 0.86836 1.22619 1.00595 0.95780 0.90128 1.22252 0.90085 0.89400 0.99428 1.22839 0.99172 0.99710 0.94019 1.22829 0.95313 1.02657 0.95629 1.23105 0.91789 1.03546 0.97712 0.92801 0.95640 0.91017 0.90210 0.87957 0.90293 0.90153 0.89682 0.95445 0.90013 0.90127 0.95712 0.98494 0.94350 0.95087 0.94969 0.94688 0.87818 0.89697 0.86230 0.91540 0.90709 0.87828 0.90419 0.88021 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.50 71.98 0.68 -1.80 16 2 C -0.09 -1.14 5.01 30.59 0.15 -0.98 16 3 C -0.11 -1.63 0.30 -52.40 -0.02 -1.64 16 4 C 0.53 12.25 5.53 87.66 0.48 12.73 16 5 O -0.59 -18.65 15.72 -3.05 -0.05 -18.70 16 6 N -0.61 -12.91 3.01 -817.93 -2.46 -15.38 16 7 C 0.12 2.89 6.58 86.35 0.57 3.45 16 8 C 0.05 1.23 5.52 86.38 0.48 1.71 16 9 N -0.52 -13.71 4.52 -861.45 -3.90 -17.61 16 10 C 0.09 2.94 2.73 46.39 0.13 3.07 16 11 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 12 C -0.11 -3.94 5.03 31.78 0.16 -3.78 16 13 C 0.18 8.85 5.43 86.73 0.47 9.32 16 14 N -0.63 -32.71 3.39 -691.57 -2.35 -35.06 16 15 C -0.24 -13.87 10.27 84.03 0.86 -13.00 16 16 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 17 C -0.07 -3.75 5.46 84.86 0.46 -3.29 16 18 N -0.95 -57.28 10.41 21.65 0.23 -57.06 16 19 Si 0.98 46.14 29.56 68.60 2.03 48.17 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 C 0.15 6.10 5.96 86.93 0.52 6.61 16 24 C 0.04 0.73 5.43 86.38 0.47 1.20 16 25 C 0.11 1.75 5.46 86.35 0.47 2.23 16 26 C -0.12 -1.80 6.73 31.12 0.21 -1.59 16 27 C -0.13 -1.13 7.73 31.12 0.24 -0.89 16 28 C -0.12 -1.27 5.64 31.12 0.18 -1.10 16 29 H 0.05 0.92 7.39 -2.39 -0.02 0.90 16 30 H 0.02 0.54 7.48 -2.39 -0.02 0.53 16 31 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.08 0.88 6.21 -2.39 -0.01 0.86 16 33 H 0.10 0.77 7.31 -2.39 -0.02 0.75 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 2.09 7.10 -2.38 -0.02 2.08 16 36 H 0.08 2.25 7.05 -2.38 -0.02 2.23 16 37 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 2.43 7.96 -2.39 -0.02 2.41 16 39 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 40 H 0.02 1.37 6.95 -2.39 -0.02 1.35 16 41 H 0.00 -0.17 7.92 -2.39 -0.02 -0.19 16 42 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 43 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.03 1.32 7.87 -2.39 -0.02 1.30 16 45 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 46 H 0.10 1.85 6.64 -2.39 -0.02 1.84 16 47 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 48 H 0.12 1.28 3.11 -2.39 -0.01 1.28 16 49 H 0.07 1.30 7.79 -2.39 -0.02 1.28 16 50 H 0.07 1.07 7.48 -2.38 -0.02 1.05 16 51 H 0.10 0.56 7.61 -2.39 -0.02 0.54 16 52 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.10 0.60 7.10 -2.39 -0.02 0.59 16 54 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 Total: -1.00 -72.35 396.69 0.88 -71.47 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.86 Total: 11.93 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 6.52 Total: 12.24 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -8.48 Total: -125.10 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.05 Total: -18.70 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -72.35 0.88 -71.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046057106.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.299 kcal (2) G-P(sol) polarization free energy of solvation -72.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds