Wall clock time and date at job start Tue Mar 31 2020 18:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99693 * 2 1 4 4 C 1.52993 * 109.47365 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47004 * 239.99812 * 3 2 1 6 6 C 1.52992 * 109.47432 * 306.05840 * 5 3 2 7 7 C 1.50696 * 109.46756 * 120.00208 * 3 2 1 8 8 O 1.21281 * 120.00355 * 0.73542 * 7 3 2 9 9 N 1.34787 * 119.99822 * 180.73615 * 7 3 2 10 10 C 1.47082 * 120.87775 * 174.77031 * 9 7 3 11 11 C 1.53234 * 108.51798 * 231.16301 * 10 9 7 12 12 N 1.46904 * 109.34472 * 306.17156 * 11 10 9 13 13 C 1.46896 * 111.00352 * 187.25560 * 12 11 10 14 14 H 1.09006 * 110.88556 * 303.87971 * 13 12 11 15 15 C 1.55153 * 111.00307 * 180.02562 * 13 12 11 16 16 C 1.54330 * 102.93975 * 206.42433 * 15 13 12 17 17 N 1.47018 * 107.27031 * 22.19142 * 16 15 13 18 18 C 1.36935 * 125.64598 * 181.02841 * 17 16 15 19 19 H 1.07994 * 120.00044 * 185.10215 * 18 17 16 20 20 C 1.38814 * 119.99986 * 5.09716 * 18 17 16 21 21 N 1.31618 * 120.00463 * 5.21625 * 20 18 17 22 22 Si 1.86809 * 119.99880 * 185.22051 * 20 18 17 23 23 H 1.48501 * 109.46989 * 84.99895 * 22 20 18 24 24 H 1.48492 * 109.46910 * 324.99876 * 22 20 18 25 25 H 1.48494 * 109.46842 * 204.99902 * 22 20 18 26 26 C 1.47421 * 108.70341 * 1.28703 * 17 16 15 27 27 C 1.46908 * 111.26314 * 63.10627 * 12 11 10 28 28 C 1.47079 * 120.87885 * 354.75064 * 9 7 3 29 29 H 1.08004 * 119.99591 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00263 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99644 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47631 * 184.25032 * 4 3 2 33 33 H 1.08999 * 109.47423 * 304.24863 * 4 3 2 34 34 H 1.09003 * 109.47126 * 64.24474 * 4 3 2 35 35 H 1.09002 * 109.46976 * 66.05676 * 5 3 2 36 36 H 1.09003 * 109.47090 * 186.05285 * 5 3 2 37 37 H 1.09002 * 109.46906 * 299.99878 * 6 5 3 38 38 H 1.09003 * 109.47436 * 59.99657 * 6 5 3 39 39 H 1.09001 * 109.47611 * 180.02562 * 6 5 3 40 40 H 1.09002 * 109.62393 * 111.46131 * 10 9 7 41 41 H 1.08997 * 109.79454 * 350.97222 * 10 9 7 42 42 H 1.09001 * 109.49448 * 186.21499 * 11 10 9 43 43 H 1.09001 * 109.49753 * 66.13350 * 11 10 9 44 44 H 1.08996 * 110.72386 * 88.05924 * 15 13 12 45 45 H 1.08997 * 110.87270 * 324.85482 * 15 13 12 46 46 H 1.09008 * 109.87829 * 262.77295 * 16 15 13 47 47 H 1.09001 * 110.00964 * 141.68753 * 16 15 13 48 48 H 0.96997 * 120.00479 * 179.97438 * 21 20 18 49 49 H 1.08997 * 110.36900 * 94.48463 * 26 17 16 50 50 H 1.08997 * 110.36572 * 216.80374 * 26 17 16 51 51 H 1.08992 * 109.49277 * 56.86089 * 27 12 11 52 52 H 1.09000 * 109.48978 * 176.93981 * 27 12 11 53 53 H 1.08994 * 109.62739 * 248.54653 * 28 9 7 54 54 H 1.08999 * 109.62913 * 8.93224 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3862 -1.2492 6 6 3.8332 0.1443 -1.3277 7 6 2.9298 1.3849 1.2304 8 8 2.9452 0.4661 2.0220 9 7 3.6878 2.4774 1.4513 10 6 4.4519 2.6263 2.6992 11 6 4.1336 3.9978 3.3040 12 7 4.3764 5.0411 2.2987 13 6 4.2490 6.3804 2.8885 14 1 3.2725 6.5079 3.3560 15 6 4.5048 7.4823 1.8266 16 6 5.0032 8.6711 2.6753 17 7 5.5200 8.1205 3.9367 18 6 6.0371 8.8504 4.9735 19 1 6.4675 8.3469 5.8265 20 6 6.0081 10.2375 4.9282 21 7 5.3931 10.8510 3.9394 22 14 6.8420 11.2335 6.2707 23 1 8.2819 11.3949 5.9452 24 1 6.7043 10.5268 7.5693 25 1 6.2028 12.5705 6.3644 26 6 5.3951 6.6521 3.8979 27 6 3.4814 4.8870 1.1440 28 6 3.7729 3.5519 0.4506 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.6120 3.4102 -0.0755 33 1 0.3932 2.3685 -0.8486 34 1 0.4941 2.4537 0.9265 35 1 2.3111 1.4368 -2.1359 36 1 3.5675 2.2781 -1.1967 37 1 4.4652 0.0937 -0.4410 38 1 3.2089 -0.7476 -1.3802 39 1 4.4603 0.2023 -2.2174 40 1 5.5186 2.5590 2.4855 41 1 4.1688 1.8419 3.4011 42 1 4.7732 4.1709 4.1695 43 1 3.0885 4.0258 3.6122 44 1 3.5815 7.7394 1.3075 45 1 5.2698 7.1676 1.1169 46 1 4.1775 9.3530 2.8791 47 1 5.7978 9.1987 2.1478 48 1 5.3724 11.8202 3.9079 49 1 6.3246 6.2013 3.5503 50 1 5.1314 6.2677 4.8832 51 1 2.4454 4.9026 1.4823 52 1 3.6479 5.7049 0.4430 53 1 4.7743 3.5735 0.0209 54 1 3.0401 3.3775 -0.3372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046060819.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:02 Heat of formation + Delta-G solvation = 23.117116 kcal Electronic energy + Delta-G solvation = -30820.062392 eV Core-core repulsion = 26986.277281 eV Total energy + Delta-G solvation = -3833.785112 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.99491 -40.07365 -38.19462 -37.72211 -35.62655 -33.88477 -33.04636 -32.36443 -30.97318 -30.43313 -29.37368 -27.64299 -26.21878 -25.48143 -24.78428 -23.72611 -22.60101 -21.77728 -21.28918 -20.60002 -19.31939 -18.84822 -17.74282 -17.47371 -16.93862 -16.67900 -16.47745 -16.14366 -16.04096 -15.88047 -15.53930 -15.28671 -14.87915 -14.80372 -14.53470 -14.11277 -13.90821 -13.86046 -13.66440 -13.54078 -13.40005 -13.20420 -12.98601 -12.89990 -12.82373 -12.71999 -12.39897 -12.28899 -12.13770 -12.05901 -11.97742 -11.83993 -11.76555 -11.66817 -11.59125 -11.50173 -11.21478 -10.71302 -10.64417 -10.25682 -9.81742 -9.27794 -8.88557 -7.83427 -5.21374 1.30106 1.45870 1.48208 1.56011 1.59636 2.02272 2.48035 2.80170 3.33232 3.41092 3.63040 3.64525 3.80390 3.87771 3.91131 3.97317 4.03363 4.13953 4.18863 4.23076 4.28840 4.35426 4.41109 4.42324 4.47260 4.60261 4.62474 4.64725 4.71204 4.74028 4.79374 4.86087 4.90769 4.96216 4.98248 5.02843 5.03595 5.08557 5.09464 5.17060 5.21109 5.28630 5.37642 5.43642 5.45855 5.63238 5.70874 5.79992 5.83756 6.02735 6.10494 6.23307 6.41486 7.10713 7.12157 7.77988 8.42266 9.24890 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.028951 B = 0.002339 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.909153 B =11966.885056 C =12221.326922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.140 4.140 3 C -0.048 4.048 4 C -0.157 4.157 5 C -0.123 4.123 6 C -0.154 4.154 7 C 0.526 3.474 8 O -0.585 6.585 9 N -0.608 5.608 10 C 0.123 3.877 11 C 0.048 3.952 12 N -0.525 5.525 13 C 0.088 3.912 14 H 0.039 0.961 15 C -0.114 4.114 16 C 0.180 3.820 17 N -0.628 5.628 18 C -0.243 4.243 19 H 0.079 0.921 20 C -0.065 4.065 21 N -0.949 5.949 22 Si 0.978 3.022 23 H -0.285 1.285 24 H -0.270 1.270 25 H -0.293 1.293 26 C 0.147 3.853 27 C 0.035 3.965 28 C 0.092 3.908 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.030 0.970 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.029 0.971 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.024 0.976 47 H -0.003 1.003 48 H 0.247 0.753 49 H 0.031 0.969 50 H 0.032 0.968 51 H 0.038 0.962 52 H 0.105 0.895 53 H 0.087 0.913 54 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 -20.064 -14.869 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.159 4.159 3 C -0.051 4.051 4 C -0.214 4.214 5 C -0.160 4.160 6 C -0.211 4.211 7 C 0.316 3.684 8 O -0.465 6.465 9 N -0.340 5.340 10 C 0.000 4.000 11 C -0.081 4.081 12 N -0.250 5.250 13 C -0.021 4.021 14 H 0.057 0.943 15 C -0.152 4.152 16 C 0.055 3.945 17 N -0.355 5.355 18 C -0.372 4.372 19 H 0.097 0.903 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.806 3.194 23 H -0.212 1.212 24 H -0.195 1.195 25 H -0.220 1.220 26 C 0.022 3.978 27 C -0.093 4.093 28 C -0.029 4.029 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.047 0.953 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.042 0.958 47 H 0.016 0.984 48 H 0.056 0.944 49 H 0.049 0.951 50 H 0.050 0.950 51 H 0.056 0.944 52 H 0.123 0.877 53 H 0.106 0.894 54 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.470 -20.398 -14.548 26.447 hybrid contribution -0.151 0.901 1.576 1.821 sum -8.621 -19.497 -12.972 24.955 Atomic orbital electron populations 1.24167 0.95548 1.03217 0.99502 1.22507 0.95984 0.96516 1.00844 1.19948 0.95486 0.96418 0.93239 1.22299 0.98929 0.96584 1.03544 1.22018 0.98139 1.00042 0.95794 1.21816 0.99590 0.98320 1.01418 1.21029 0.79084 0.80844 0.87461 1.90652 1.67530 1.38692 1.49605 1.48204 1.46365 1.20062 1.19386 1.21581 0.96454 0.95880 0.86109 1.22412 0.99518 0.91067 0.95125 1.61929 1.53549 1.01118 1.08367 1.22563 0.96345 0.88014 0.95214 0.94336 1.22733 1.01482 0.94045 0.96957 1.20980 0.95614 0.92954 0.84968 1.44732 1.73097 1.01611 1.16016 1.19414 1.31037 0.89025 0.97723 0.90277 1.25650 1.01813 0.97484 1.00910 1.70165 1.47965 1.07586 1.34082 0.85107 0.77771 0.77690 0.78841 1.21209 1.19522 1.21975 1.21607 0.95976 0.84032 0.96217 1.22657 0.94285 0.98851 0.93535 1.22755 1.04853 0.84157 0.91149 0.87500 0.86748 0.87998 0.89644 0.88571 0.93004 0.88259 0.88845 0.95097 0.92386 0.90846 0.90265 0.90048 0.89668 0.95290 0.89955 0.90109 0.95828 0.98449 0.94358 0.95103 0.94954 0.94416 0.87691 0.89445 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.65 13.70 67.78 0.93 -1.72 16 2 C -0.14 -2.40 7.11 25.64 0.18 -2.22 16 3 C -0.05 -0.75 0.51 -53.68 -0.03 -0.77 16 4 C -0.16 -1.85 6.83 71.98 0.49 -1.35 16 5 C -0.12 -1.36 4.62 30.59 0.14 -1.22 16 6 C -0.15 -2.11 9.35 71.98 0.67 -1.43 16 7 C 0.53 12.08 5.52 87.65 0.48 12.56 16 8 O -0.58 -18.41 15.52 -3.03 -0.05 -18.45 16 9 N -0.61 -12.50 3.00 -817.95 -2.46 -14.96 16 10 C 0.12 2.82 6.57 86.35 0.57 3.39 16 11 C 0.05 1.18 5.52 86.38 0.48 1.65 16 12 N -0.52 -13.38 4.52 -861.46 -3.90 -17.28 16 13 C 0.09 2.89 2.73 46.38 0.13 3.02 16 14 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 15 C -0.11 -3.89 5.03 31.78 0.16 -3.73 16 16 C 0.18 8.79 5.42 86.73 0.47 9.26 16 17 N -0.63 -32.55 3.39 -691.57 -2.35 -34.90 16 18 C -0.24 -13.79 10.27 84.03 0.86 -12.93 16 19 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 20 C -0.07 -3.75 5.46 84.86 0.46 -3.29 16 21 N -0.95 -57.17 10.40 21.65 0.23 -56.95 16 22 Si 0.98 46.04 29.56 68.60 2.03 48.07 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 C 0.15 6.03 5.96 86.93 0.52 6.55 16 27 C 0.03 0.66 5.20 86.38 0.45 1.11 16 28 C 0.09 1.39 4.23 86.35 0.37 1.76 16 29 H 0.11 1.30 8.06 -2.91 -0.02 1.28 16 30 H 0.11 1.32 5.68 -2.91 -0.02 1.31 16 31 H 0.10 1.97 6.90 -2.91 -0.02 1.95 16 32 H 0.09 0.84 4.57 -2.39 -0.01 0.83 16 33 H 0.10 0.73 7.22 -2.39 -0.02 0.71 16 34 H 0.05 0.77 7.75 -2.39 -0.02 0.75 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.86 4.58 -2.39 -0.01 0.85 16 37 H 0.03 0.56 7.42 -2.39 -0.02 0.55 16 38 H 0.06 0.81 6.46 -2.39 -0.02 0.79 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 41 H 0.08 2.07 7.11 -2.39 -0.02 2.05 16 42 H 0.08 2.20 7.05 -2.39 -0.02 2.19 16 43 H 0.03 0.75 8.14 -2.39 -0.02 0.74 16 44 H 0.08 2.40 7.96 -2.39 -0.02 2.38 16 45 H 0.08 2.56 8.10 -2.39 -0.02 2.54 16 46 H 0.02 1.30 6.97 -2.38 -0.02 1.28 16 47 H 0.00 -0.15 7.89 -2.39 -0.02 -0.17 16 48 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 49 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.03 1.31 7.87 -2.39 -0.02 1.30 16 51 H 0.04 0.73 7.96 -2.39 -0.02 0.71 16 52 H 0.10 1.78 6.64 -2.39 -0.02 1.76 16 53 H 0.09 1.25 8.12 -2.39 -0.02 1.23 16 54 H 0.14 1.35 2.53 -2.39 -0.01 1.35 16 Total: -1.00 -72.41 393.59 1.71 -70.70 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.87 Total: 13.13 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 7.33 Total: 10.63 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -8.48 Total: -124.08 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.05 Total: -18.45 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -72.41 1.71 -70.70 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046060819.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.820 kcal (2) G-P(sol) polarization free energy of solvation -72.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds