Wall clock time and date at job start Tue Mar 31 2020 18:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 120.00165 * 2 1 4 4 C 1.52997 * 109.47278 * 119.99380 * 3 2 1 5 5 C 1.52999 * 109.47580 * 240.00141 * 3 2 1 6 6 C 1.52999 * 109.46641 * 299.99864 * 5 3 2 7 7 C 1.50707 * 109.46995 * 359.97438 * 3 2 1 8 8 O 1.21276 * 119.99909 * 246.16133 * 7 3 2 9 9 N 1.34779 * 119.99954 * 66.15594 * 7 3 2 10 10 C 1.47075 * 120.88155 * 354.21118 * 9 7 3 11 11 C 1.53243 * 108.52303 * 231.15971 * 10 9 7 12 12 N 1.46900 * 109.33675 * 306.17246 * 11 10 9 13 13 C 1.46897 * 111.00062 * 187.25135 * 12 11 10 14 14 H 1.09006 * 110.64303 * 298.31418 * 13 12 11 15 15 C 1.55152 * 110.72357 * 174.97615 * 13 12 11 16 16 C 1.54910 * 101.58005 * 206.13580 * 15 13 12 17 17 N 1.47422 * 104.83551 * 37.00954 * 16 15 13 18 18 C 1.36940 * 125.64761 * 155.89233 * 17 16 15 19 19 H 1.08006 * 119.99400 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00176 * 359.97391 * 18 17 16 21 21 N 1.31613 * 120.00054 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99884 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47041 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47246 * 119.99868 * 22 20 18 25 25 H 1.48501 * 109.47024 * 240.00230 * 22 20 18 26 26 C 1.47022 * 108.69885 * 335.87055 * 17 16 15 27 27 C 1.46902 * 111.27299 * 63.10091 * 12 11 10 28 28 C 1.47076 * 120.88060 * 174.18182 * 9 7 3 29 29 H 1.08002 * 119.99769 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00195 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.99844 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47657 * 305.00961 * 4 3 2 33 33 H 1.08999 * 109.46935 * 65.00477 * 4 3 2 34 34 H 1.09004 * 109.47386 * 185.00397 * 4 3 2 35 35 H 1.08992 * 109.47221 * 59.99370 * 5 3 2 36 36 H 1.08994 * 109.47633 * 180.02562 * 5 3 2 37 37 H 1.09005 * 109.47377 * 59.99858 * 6 5 3 38 38 H 1.08997 * 109.47479 * 179.97438 * 6 5 3 39 39 H 1.08999 * 109.47245 * 299.99883 * 6 5 3 40 40 H 1.09009 * 109.63076 * 111.44945 * 10 9 7 41 41 H 1.08998 * 109.63313 * 350.87283 * 10 9 7 42 42 H 1.08996 * 109.49522 * 186.21037 * 11 10 9 43 43 H 1.09001 * 109.50942 * 66.13964 * 11 10 9 44 44 H 1.08990 * 111.00856 * 88.06134 * 15 13 12 45 45 H 1.09001 * 111.00414 * 324.20308 * 15 13 12 46 46 H 1.09002 * 110.36714 * 278.16552 * 16 15 13 47 47 H 1.09002 * 110.36579 * 155.84997 * 16 15 13 48 48 H 0.96996 * 120.00075 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.87902 * 120.47833 * 26 17 16 50 50 H 1.09006 * 109.87910 * 241.48629 * 26 17 16 51 51 H 1.09002 * 109.48753 * 56.85513 * 27 12 11 52 52 H 1.08992 * 109.49279 * 176.93245 * 27 12 11 53 53 H 1.09002 * 109.63727 * 248.54922 * 28 9 7 54 54 H 1.09000 * 109.63262 * 9.13315 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9431 1.3862 1.2493 5 6 2.9432 1.3862 -1.2492 6 6 3.9374 0.2233 -1.2492 7 6 1.0842 2.4505 -0.0006 8 8 1.0132 3.1870 -0.9615 9 7 0.2873 2.6564 1.0666 10 6 0.2660 1.7045 2.1876 11 6 -1.1904 1.3251 2.4765 12 7 -1.9794 2.5467 2.6838 13 6 -3.3407 2.2245 3.1319 14 1 -3.8644 1.6367 2.3780 15 6 -4.1281 3.5180 3.4696 16 6 -5.1584 2.9945 4.5012 17 7 -4.4244 1.9889 5.2907 18 6 -4.7313 1.5963 6.5663 19 1 -4.1291 0.8484 7.0606 20 6 -5.8164 2.1597 7.2237 21 7 -6.5505 3.0707 6.6210 22 14 -6.2354 1.6236 8.9634 23 1 -5.2637 0.5939 9.4116 24 1 -6.1682 2.7959 9.8724 25 1 -7.6070 1.0551 8.9893 26 6 -3.3086 1.4770 4.4817 27 6 -2.0066 3.3758 1.4714 28 6 -0.5837 3.8391 1.1414 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 2.3278 1.2394 2.1370 33 1 3.7085 0.6113 1.2057 34 1 3.4196 2.3654 1.2952 35 1 2.3166 1.3284 -2.1392 36 1 3.4885 2.3299 -1.2490 37 1 3.3924 -0.7208 -1.2492 38 1 4.5638 0.2807 -2.1393 39 1 4.5640 0.2810 -0.3592 40 1 0.7055 2.1687 3.0706 41 1 0.8310 0.8115 1.9205 42 1 -1.2342 0.7072 3.3733 43 1 -1.5962 0.7690 1.6314 44 1 -4.6273 3.9137 2.5852 45 1 -3.4749 4.2678 3.9159 46 1 -6.0045 2.5332 3.9918 47 1 -5.4984 3.8069 5.1436 48 1 -7.3084 3.4646 7.0806 49 1 -2.3636 1.6695 4.9896 50 1 -3.4301 0.4062 4.3181 51 1 -2.4009 2.7913 0.6400 52 1 -2.6425 4.2449 1.6393 53 1 -0.2260 4.5086 1.9237 54 1 -0.5806 4.3574 0.1825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046060822.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:08 Heat of formation + Delta-G solvation = 24.045185 kcal Electronic energy + Delta-G solvation = -31047.877851 eV Core-core repulsion = 27214.132983 eV Total energy + Delta-G solvation = -3833.744868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.18259 -40.10209 -38.16547 -37.70804 -35.66133 -33.86066 -33.23766 -32.10262 -31.14830 -30.22122 -29.38100 -27.64179 -26.36176 -25.61071 -24.73727 -23.24371 -22.76026 -21.84945 -21.26919 -20.59377 -19.45236 -18.90933 -17.98410 -17.26032 -17.01054 -16.91080 -16.50618 -16.02660 -15.89550 -15.62055 -15.45015 -15.38959 -14.90696 -14.85594 -14.47730 -14.23535 -14.11187 -13.73159 -13.50028 -13.44844 -13.36174 -13.07296 -12.94615 -12.75202 -12.71827 -12.70060 -12.54560 -12.48380 -12.37563 -12.16169 -11.94227 -11.82643 -11.78734 -11.67153 -11.56294 -11.41012 -11.36388 -10.74432 -10.67521 -10.19666 -9.83106 -9.24520 -8.87272 -7.76079 -5.20390 1.24272 1.48136 1.49095 1.52605 1.59425 1.89692 2.49482 2.79969 3.31888 3.34866 3.67516 3.69794 3.74251 3.84790 3.94581 3.99634 4.09075 4.09589 4.22219 4.27739 4.30241 4.31784 4.42366 4.46544 4.49297 4.60881 4.64376 4.70307 4.72937 4.74425 4.82116 4.84947 4.91059 4.97760 5.00327 5.02076 5.03448 5.09506 5.11495 5.14565 5.19713 5.33599 5.39808 5.48372 5.52956 5.58416 5.64412 5.70123 5.80962 6.04956 6.09559 6.32276 6.37221 7.06667 7.11992 7.79604 8.43483 9.26369 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.025530 B = 0.002501 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.487417 B =11192.168132 C =11755.177998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C -0.049 4.049 4 C -0.154 4.154 5 C -0.093 4.093 6 C -0.149 4.149 7 C 0.522 3.478 8 O -0.583 6.583 9 N -0.607 5.607 10 C 0.103 3.897 11 C 0.034 3.966 12 N -0.528 5.528 13 C 0.090 3.910 14 H 0.044 0.956 15 C -0.117 4.117 16 C 0.155 3.845 17 N -0.626 5.626 18 C -0.234 4.234 19 H 0.082 0.918 20 C -0.070 4.070 21 N -0.951 5.951 22 Si 0.981 3.019 23 H -0.265 1.265 24 H -0.292 1.292 25 H -0.294 1.294 26 C 0.148 3.852 27 C 0.049 3.951 28 C 0.119 3.881 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.091 0.909 43 H 0.044 0.956 44 H 0.077 0.923 45 H 0.069 0.931 46 H -0.015 1.015 47 H 0.073 0.927 48 H 0.246 0.754 49 H 0.037 0.963 50 H 0.019 0.981 51 H 0.030 0.970 52 H 0.092 0.908 53 H 0.080 0.920 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.993 -6.094 -14.387 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.158 4.158 3 C -0.052 4.052 4 C -0.211 4.211 5 C -0.131 4.131 6 C -0.206 4.206 7 C 0.312 3.688 8 O -0.464 6.464 9 N -0.339 5.339 10 C -0.018 4.018 11 C -0.094 4.094 12 N -0.253 5.253 13 C -0.019 4.019 14 H 0.062 0.938 15 C -0.155 4.155 16 C 0.029 3.971 17 N -0.352 5.352 18 C -0.363 4.363 19 H 0.100 0.900 20 C -0.262 4.262 21 N -0.601 5.601 22 Si 0.809 3.191 23 H -0.189 1.189 24 H -0.219 1.219 25 H -0.221 1.221 26 C 0.022 3.978 27 C -0.080 4.080 28 C -0.004 4.004 29 H 0.137 0.863 30 H 0.101 0.899 31 H 0.169 0.831 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.144 0.856 42 H 0.109 0.891 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.003 0.997 47 H 0.091 0.909 48 H 0.056 0.944 49 H 0.054 0.946 50 H 0.037 0.963 51 H 0.048 0.952 52 H 0.111 0.889 53 H 0.098 0.902 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 21.064 -5.411 -14.361 26.062 hybrid contribution -1.510 -0.302 0.207 1.554 sum 19.554 -5.713 -14.154 24.806 Atomic orbital electron populations 1.24352 0.96719 1.02656 1.00127 1.22856 0.95254 0.97301 1.00392 1.20035 0.94569 0.90943 0.99633 1.22264 1.00102 1.03654 0.95049 1.21273 0.96939 0.99962 0.94930 1.21884 0.98547 0.97397 1.02813 1.21102 0.80745 0.85867 0.81064 1.90652 1.70433 1.50169 1.35097 1.48276 1.41301 1.24654 1.19702 1.22516 0.96333 0.94166 0.88826 1.22674 0.93671 0.91509 1.01576 1.61965 1.12385 1.18931 1.31992 1.22380 0.88212 0.96317 0.94958 0.93836 1.22860 0.97459 0.96474 0.98744 1.21697 0.91222 0.92821 0.91314 1.44758 1.31542 1.46217 1.12693 1.19489 1.09525 1.17787 0.89505 0.89995 1.25646 0.98144 0.99746 1.02660 1.70055 1.20482 1.31945 1.37591 0.84968 0.77449 0.77357 0.79312 1.18932 1.21867 1.22074 1.21320 0.90996 0.94846 0.90596 1.22412 0.97039 0.98290 0.90248 1.21663 0.88609 0.87651 1.02484 0.86318 0.89944 0.83052 0.90126 0.88474 0.92506 0.93210 0.92522 0.91401 0.92173 0.90876 0.90043 0.85631 0.89095 0.93756 0.90449 0.91269 0.99710 0.90859 0.94389 0.94551 0.96259 0.95224 0.88925 0.90154 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.25 10.55 67.78 0.72 -2.53 16 2 C -0.14 -1.85 6.76 25.64 0.17 -1.67 16 3 C -0.05 -0.78 0.51 -53.67 -0.03 -0.81 16 4 C -0.15 -1.77 7.85 71.98 0.57 -1.21 16 5 C -0.09 -1.51 4.29 30.59 0.13 -1.38 16 6 C -0.15 -1.45 9.31 71.98 0.67 -0.78 16 7 C 0.52 12.23 5.12 87.66 0.45 12.68 16 8 O -0.58 -18.24 15.43 -3.02 -0.05 -18.29 16 9 N -0.61 -13.03 2.20 -817.93 -1.80 -14.83 16 10 C 0.10 1.86 3.73 86.35 0.32 2.18 16 11 C 0.03 0.75 5.06 86.38 0.44 1.19 16 12 N -0.53 -14.25 4.45 -863.09 -3.84 -18.09 16 13 C 0.09 3.02 2.65 46.10 0.12 3.14 16 14 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 15 C -0.12 -4.34 5.38 31.98 0.17 -4.17 16 16 C 0.15 7.71 5.89 86.86 0.51 8.22 16 17 N -0.63 -32.35 3.39 -691.97 -2.35 -34.70 16 18 C -0.23 -13.12 10.27 84.03 0.86 -12.25 16 19 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 20 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 21 N -0.95 -56.96 10.09 21.65 0.22 -56.74 16 22 Si 0.98 45.60 29.55 68.60 2.03 47.63 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 26 C 0.15 5.99 5.70 86.73 0.49 6.48 16 27 C 0.05 1.19 5.47 86.38 0.47 1.66 16 28 C 0.12 2.73 6.61 86.35 0.57 3.30 16 29 H 0.12 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.08 1.76 4.34 -2.91 -0.01 1.75 16 31 H 0.15 1.20 7.00 -2.91 -0.02 1.18 16 32 H 0.08 0.86 4.66 -2.39 -0.01 0.85 16 33 H 0.10 0.69 6.17 -2.39 -0.01 0.67 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 1.00 8.03 -2.39 -0.02 0.98 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 0.54 6.62 -2.38 -0.02 0.52 16 38 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.07 0.53 6.32 -2.39 -0.02 0.51 16 40 H 0.08 1.44 8.01 -2.38 -0.02 1.42 16 41 H 0.13 1.74 3.04 -2.39 -0.01 1.74 16 42 H 0.09 2.04 6.78 -2.39 -0.02 2.03 16 43 H 0.04 0.98 6.00 -2.39 -0.01 0.96 16 44 H 0.08 2.51 7.93 -2.39 -0.02 2.49 16 45 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 46 H -0.02 -0.81 8.14 -2.39 -0.02 -0.83 16 47 H 0.07 4.17 5.87 -2.39 -0.01 4.15 16 48 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 49 H 0.04 1.47 7.70 -2.39 -0.02 1.45 16 50 H 0.02 0.77 8.14 -2.38 -0.02 0.76 16 51 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.09 2.23 6.80 -2.39 -0.02 2.21 16 53 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 54 H 0.09 2.12 7.04 -2.39 -0.02 2.10 16 Total: -1.00 -70.05 386.87 2.20 -67.85 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.88 Total: 16.63 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 7.11 Total: 10.54 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -7.77 Total: -124.37 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.05 Total: -18.29 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -70.05 2.20 -67.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046060822.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.899 kcal (2) G-P(sol) polarization free energy of solvation -70.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds