Wall clock time and date at job start Tue Mar 31 2020 19:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.07183 * 2 1 4 4 C 1.53992 * 109.91927 * 238.79171 * 2 1 3 5 5 H 1.08996 * 110.39390 * 120.46301 * 4 2 1 6 6 C 1.50697 * 110.30754 * 358.33940 * 4 2 1 7 7 O 1.21278 * 120.00113 * 269.30148 * 6 4 2 8 8 N 1.34778 * 120.00371 * 89.30216 * 6 4 2 9 9 C 1.46493 * 120.00619 * 179.97438 * 8 6 4 10 10 C 1.52998 * 109.47416 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.43021 * 60.05450 * 10 9 8 12 12 C 1.52454 * 109.68826 * 179.88894 * 10 9 8 13 13 C 1.53703 * 108.98409 * 65.97154 * 12 10 9 14 14 H 1.09002 * 112.58369 * 188.08507 * 13 12 10 15 15 C 1.54601 * 107.83289 * 312.38172 * 13 12 10 16 16 C 1.54321 * 104.74710 * 88.66344 * 15 13 12 17 17 C 1.54990 * 104.71594 * 359.83427 * 16 15 13 18 18 H 1.08993 * 112.26788 * 146.97776 * 17 16 15 19 19 C 1.53142 * 109.43754 * 300.14427 * 10 9 8 20 20 N 1.48293 * 107.27381 * 64.16557 * 13 12 10 21 21 C 1.36932 * 128.21359 * 107.39823 * 20 13 12 22 22 H 1.08003 * 120.00570 * 155.04020 * 21 20 13 23 23 C 1.38819 * 119.99936 * 335.04157 * 21 20 13 24 24 N 1.31619 * 119.99752 * 354.98178 * 23 21 20 25 25 Si 1.86798 * 120.00146 * 174.98678 * 23 21 20 26 26 H 1.48494 * 109.47159 * 179.97438 * 25 23 21 27 27 H 1.48501 * 109.47013 * 299.99996 * 25 23 21 28 28 H 1.48507 * 109.47263 * 59.99778 * 25 23 21 29 29 C 1.54596 * 105.13950 * 239.42678 * 4 2 1 30 30 C 1.54936 * 102.92217 * 338.03679 * 29 4 2 31 31 N 1.47899 * 109.91641 * 121.20240 * 2 1 3 32 32 C 1.46901 * 110.99992 * 265.19513 * 31 2 1 33 33 H 1.08997 * 109.47267 * 186.19815 * 1 2 3 34 34 H 1.08996 * 109.47101 * 306.20068 * 1 2 3 35 35 H 1.09004 * 109.46985 * 66.19591 * 1 2 3 36 36 H 0.97000 * 119.99518 * 359.97438 * 8 6 4 37 37 H 1.09007 * 109.46898 * 59.99726 * 9 8 6 38 38 H 1.09001 * 109.47266 * 300.00064 * 9 8 6 39 39 H 1.08999 * 109.38890 * 306.19330 * 12 10 9 40 40 H 1.09002 * 109.64199 * 185.90128 * 12 10 9 41 41 H 1.09000 * 110.38839 * 207.47673 * 15 13 12 42 42 H 1.09000 * 110.38685 * 329.73803 * 15 13 12 43 43 H 1.09003 * 110.37811 * 118.82273 * 16 15 13 44 44 H 1.08998 * 110.38007 * 241.06793 * 16 15 13 45 45 H 1.08998 * 109.57345 * 174.00408 * 19 10 9 46 46 H 1.09000 * 109.57147 * 53.63883 * 19 10 9 47 47 H 0.97000 * 119.99678 * 180.02562 * 24 23 21 48 48 H 1.08995 * 110.72865 * 96.40304 * 29 4 2 49 49 H 1.09002 * 110.72187 * 219.68328 * 29 4 2 50 50 H 1.09001 * 110.66884 * 155.84751 * 30 29 4 51 51 H 1.08999 * 110.66792 * 278.98210 * 30 29 4 52 52 H 1.09000 * 109.47358 * 302.48040 * 32 31 2 53 53 H 1.09001 * 109.46972 * 62.48030 * 32 31 2 54 54 H 1.09005 * 109.47209 * 182.47241 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7502 -1.2383 5 1 2.6710 -0.0906 -1.8491 6 6 0.9046 -1.2894 -2.0493 7 8 0.4787 -2.4038 -1.8312 8 7 0.3493 -0.5332 -3.0170 9 6 -0.7683 -1.0575 -3.8057 10 6 -1.2086 -0.0072 -4.8273 11 1 -0.3749 0.2263 -5.4897 12 6 -2.3700 -0.5490 -5.6530 13 6 -3.5902 -0.7360 -4.7372 14 1 -4.4115 -1.2521 -5.2344 15 6 -3.1185 -1.4785 -3.4658 16 6 -2.6746 -0.3600 -2.4997 17 6 -2.9167 0.9556 -3.2826 18 1 -3.2051 1.7784 -2.6285 19 6 -1.6485 1.2635 -4.0945 20 7 -3.9853 0.6077 -4.2502 21 6 -5.0753 1.3532 -4.6125 22 1 -5.4717 2.0950 -3.9349 23 6 -5.6710 1.1555 -5.8506 24 7 -5.1308 0.3233 -6.7154 25 14 -7.2392 2.0707 -6.2895 26 1 -7.6695 1.6874 -7.6581 27 1 -8.3059 1.7191 -5.3180 28 1 -6.9886 3.5337 -6.2415 29 6 2.9058 -1.9118 -0.6760 30 6 3.2681 -1.4185 0.7473 31 7 2.0338 -0.7204 1.1894 32 6 2.3211 0.2124 2.2873 33 1 -0.3633 -1.0216 0.1109 34 1 -0.3633 0.6069 0.8292 35 1 -0.3633 0.4148 -0.9403 36 1 0.6897 0.3582 -3.1911 37 1 -1.6019 -1.2918 -3.1436 38 1 -0.4528 -1.9616 -4.3265 39 1 -2.0888 -1.5085 -6.0871 40 1 -2.6146 0.1556 -6.4479 41 1 -3.9396 -2.0500 -3.0331 42 1 -2.2807 -2.1358 -3.6987 43 1 -3.2773 -0.3813 -1.5917 44 1 -1.6177 -0.4667 -2.2554 45 1 -1.8611 2.0485 -4.8202 46 1 -0.8552 1.5905 -3.4223 47 1 -5.5468 0.1854 -7.5808 48 1 2.3214 -2.8306 -0.6288 49 1 3.8052 -2.0559 -1.2748 50 1 3.4887 -2.2615 1.4021 51 1 4.1097 -0.7268 0.7121 52 1 3.0444 0.9559 1.9525 53 1 1.4007 0.7116 2.5902 54 1 2.7313 -0.3382 3.1339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048527411.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:58 Heat of formation + Delta-G solvation = 70.152173 kcal Electronic energy + Delta-G solvation = -32047.628247 eV Core-core repulsion = 28215.882728 eV Total energy + Delta-G solvation = -3831.745518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.79736 -41.11373 -38.92583 -36.15025 -34.52534 -33.39667 -32.93138 -32.31738 -32.15562 -31.35088 -28.53870 -27.21490 -25.80938 -25.36202 -24.81645 -23.01095 -22.06605 -21.88638 -21.16197 -20.61957 -20.13695 -18.69270 -17.94798 -17.58220 -17.16866 -16.73255 -16.32275 -16.05132 -15.97445 -15.41057 -15.13596 -14.81326 -14.50710 -14.39333 -14.25703 -14.00306 -13.66530 -13.48095 -13.38002 -13.32739 -13.14252 -13.06088 -12.98559 -12.78287 -12.66180 -12.62429 -12.50829 -12.29792 -12.17037 -12.06824 -11.94783 -11.79830 -11.63769 -11.44142 -11.25068 -10.99880 -10.89516 -10.73380 -10.63257 -10.43037 -9.41251 -9.33570 -8.59389 -7.83941 -5.22492 1.47398 1.48760 1.54832 1.75937 2.34031 2.51733 3.04568 3.34581 3.58021 3.60439 3.63109 3.92603 3.97524 3.99520 4.08495 4.24326 4.27321 4.31609 4.34446 4.37061 4.40610 4.50883 4.55201 4.56013 4.58937 4.64947 4.73757 4.76954 4.81783 4.84960 4.89142 4.93899 5.01290 5.03798 5.06004 5.07405 5.11772 5.14435 5.21903 5.30208 5.34089 5.41182 5.42168 5.53653 5.57698 5.63396 5.65457 5.78966 5.94692 5.97606 6.16214 6.33006 6.72071 7.12691 7.41341 7.77830 8.64159 9.28275 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.002998 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.874762 B = 9338.133199 C = 9846.709857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 H 0.081 0.919 4 C -0.117 4.117 5 H 0.123 0.877 6 C 0.524 3.476 7 O -0.578 6.578 8 N -0.714 5.714 9 C 0.015 3.985 10 C -0.075 4.075 11 H 0.068 0.932 12 C -0.102 4.102 13 C 0.182 3.818 14 H 0.050 0.950 15 C -0.165 4.165 16 C -0.150 4.150 17 C 0.143 3.857 18 H 0.065 0.935 19 C -0.112 4.112 20 N -0.605 5.605 21 C -0.241 4.241 22 H 0.068 0.932 23 C -0.049 4.049 24 N -0.928 5.928 25 Si 0.967 3.033 26 H -0.296 1.296 27 H -0.283 1.283 28 H -0.278 1.278 29 C -0.113 4.113 30 C 0.040 3.960 31 N -0.539 5.539 32 C 0.017 3.983 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.407 0.593 37 H 0.181 0.819 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.103 0.897 43 H 0.050 0.950 44 H 0.121 0.879 45 H 0.039 0.961 46 H 0.082 0.918 47 H 0.246 0.754 48 H 0.066 0.934 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.065 0.935 52 H 0.040 0.960 53 H 0.067 0.933 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.028 0.856 13.341 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 H 0.099 0.901 4 C -0.139 4.139 5 H 0.141 0.859 6 C 0.312 3.688 7 O -0.458 6.458 8 N -0.366 5.366 9 C -0.105 4.105 10 C -0.093 4.093 11 H 0.086 0.914 12 C -0.141 4.141 13 C 0.076 3.924 14 H 0.068 0.932 15 C -0.203 4.203 16 C -0.188 4.188 17 C 0.037 3.963 18 H 0.083 0.917 19 C -0.152 4.152 20 N -0.327 5.327 21 C -0.370 4.370 22 H 0.085 0.915 23 C -0.244 4.244 24 N -0.574 5.574 25 Si 0.796 3.204 26 H -0.222 1.222 27 H -0.209 1.209 28 H -0.204 1.204 29 C -0.151 4.151 30 C -0.087 4.087 31 N -0.264 5.264 32 C -0.132 4.132 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.243 0.757 37 H 0.196 0.804 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.121 0.879 43 H 0.069 0.931 44 H 0.138 0.862 45 H 0.057 0.943 46 H 0.100 0.900 47 H 0.055 0.945 48 H 0.084 0.916 49 H 0.111 0.889 50 H 0.104 0.896 51 H 0.083 0.917 52 H 0.058 0.942 53 H 0.086 0.914 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 19.142 -0.231 13.491 23.420 hybrid contribution -0.633 1.262 -1.363 1.962 sum 18.509 1.031 12.129 22.153 Atomic orbital electron populations 1.21996 0.94697 1.01757 1.02325 1.22253 0.95822 0.96407 0.88164 0.90069 1.22359 0.95273 0.99595 0.96668 0.85873 1.20636 0.83946 0.84717 0.79534 1.90674 1.64407 1.21728 1.68956 1.46277 1.35263 1.19406 1.35663 1.24770 0.92737 0.95637 0.97356 1.20998 0.97157 0.95123 0.96062 0.91353 1.21705 0.95139 0.99109 0.98187 1.21175 0.93966 0.85856 0.91433 0.93211 1.23479 1.00667 0.98254 0.97892 1.23465 1.02796 0.95240 0.97309 1.21831 0.88457 0.95128 0.90926 0.91698 1.22034 0.97881 0.96339 0.98904 1.45264 1.23771 1.15377 1.48254 1.19142 1.04207 1.16171 0.97489 0.91474 1.25711 1.02444 1.00747 0.95532 1.70062 1.40684 1.39605 1.07069 0.85350 0.80019 0.78586 0.76452 1.22232 1.20911 1.20390 1.22494 0.99317 0.97402 0.95925 1.23245 0.91252 0.98800 0.95398 1.64665 1.27601 1.27239 1.06897 1.22547 1.01096 0.95121 0.94394 0.93842 0.91829 0.91444 0.75653 0.80379 0.94070 0.93784 0.93492 0.93484 0.87912 0.93099 0.86204 0.94252 0.89998 0.94477 0.91565 0.88904 0.89607 0.91713 0.94152 0.91437 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.36 71.98 0.60 -2.61 16 2 C 0.08 1.41 3.09 45.06 0.14 1.55 16 3 H 0.08 1.06 7.69 -2.39 -0.02 1.04 16 4 C -0.12 -2.03 3.38 -10.66 -0.04 -2.06 16 5 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 6 C 0.52 12.96 4.55 87.66 0.40 13.36 16 7 O -0.58 -19.47 15.22 -3.02 -0.05 -19.52 16 8 N -0.71 -16.33 3.62 -463.07 -1.68 -18.01 16 9 C 0.02 0.44 2.69 86.38 0.23 0.68 16 10 C -0.07 -2.43 2.74 -10.93 -0.03 -2.46 16 11 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 12 C -0.10 -4.26 5.16 30.65 0.16 -4.10 16 13 C 0.18 8.46 3.08 45.43 0.14 8.60 16 14 H 0.05 2.72 6.92 -2.39 -0.02 2.71 16 15 C -0.16 -6.32 5.72 31.59 0.18 -6.14 16 16 C -0.15 -5.17 5.74 31.72 0.18 -4.99 16 17 C 0.14 5.52 4.34 45.56 0.20 5.71 16 18 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 19 C -0.11 -3.69 5.27 30.88 0.16 -3.53 16 20 N -0.60 -29.60 2.79 -636.48 -1.77 -31.37 16 21 C -0.24 -13.17 10.34 84.04 0.87 -12.30 16 22 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 23 C -0.05 -2.71 5.43 84.86 0.46 -2.25 16 24 N -0.93 -53.64 10.33 21.65 0.22 -53.42 16 25 Si 0.97 45.15 29.56 68.60 2.03 47.18 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 29 C -0.11 -1.97 6.55 31.80 0.21 -1.76 16 30 C 0.04 0.58 6.56 86.65 0.57 1.15 16 31 N -0.54 -9.52 5.18 -884.07 -4.58 -14.10 16 32 C 0.02 0.22 9.41 127.69 1.20 1.42 16 33 H 0.04 1.20 7.42 -2.39 -0.02 1.19 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.43 5.34 -2.38 -0.01 1.41 16 36 H 0.41 7.08 7.31 -92.71 -0.68 6.41 16 37 H 0.18 5.81 1.12 -109.53 -0.12 5.69 16 38 H 0.04 1.31 8.00 -2.39 -0.02 1.29 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.05 2.34 7.39 -2.39 -0.02 2.32 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.10 3.65 4.84 -2.39 -0.01 3.64 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.12 3.60 2.61 -2.39 -0.01 3.60 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.08 2.00 6.70 -2.39 -0.02 1.99 16 47 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 48 H 0.07 1.60 6.83 -2.39 -0.02 1.59 16 49 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.06 0.68 8.00 -2.39 -0.02 0.67 16 52 H 0.04 0.41 7.99 -2.39 -0.02 0.39 16 53 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 54 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -67.62 382.43 -0.09 -67.72 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.10 Total: 31.26 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 5.63 Total: -9.74 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -7.81 Total: -116.90 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -67.62 -0.09 -67.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048527411.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.869 kcal (2) G-P(sol) polarization free energy of solvation -67.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds