Wall clock time and date at job start Tue Mar 31 2020 19:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46832 * 2 1 4 4 C 1.50694 * 109.47033 * 240.00559 * 2 1 3 5 5 O 1.21279 * 120.00351 * 17.91052 * 4 2 1 6 6 N 1.34775 * 119.99855 * 197.92071 * 4 2 1 7 7 C 1.46667 * 125.34140 * 4.68291 * 6 4 2 8 8 C 1.53721 * 107.94570 * 180.54601 * 7 6 4 9 9 H 1.09009 * 112.56028 * 139.72118 * 8 7 6 10 10 C 1.53689 * 109.34508 * 266.25290 * 8 7 6 11 11 N 1.46645 * 108.00679 * 127.55811 * 10 8 7 12 12 C 1.36935 * 125.32694 * 180.82029 * 11 10 8 13 13 H 1.08000 * 119.99781 * 180.02562 * 12 11 10 14 14 C 1.38815 * 120.00269 * 0.02562 * 12 11 10 15 15 N 1.31617 * 119.99706 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00077 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47326 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47126 * 119.99824 * 16 14 12 19 19 H 1.48499 * 109.47194 * 239.99680 * 16 14 12 20 20 C 1.46741 * 109.34261 * 0.83520 * 11 10 8 21 21 C 1.53929 * 106.72193 * 341.66300 * 20 11 10 22 22 H 1.09000 * 113.01215 * 150.82582 * 21 20 11 23 23 C 1.46783 * 125.33881 * 184.38674 * 6 4 2 24 24 N 1.46897 * 109.47449 * 119.99791 * 2 1 3 25 25 C 1.46840 * 111.00260 * 300.00508 * 24 2 1 26 26 C 1.53040 * 109.51721 * 185.84560 * 25 24 2 27 27 C 1.53120 * 109.27305 * 300.79840 * 26 25 24 28 28 C 1.53117 * 109.15143 * 57.67190 * 27 26 25 29 29 C 1.46849 * 110.99804 * 64.21136 * 24 2 1 30 30 H 1.09008 * 109.46978 * 299.99616 * 1 2 3 31 31 H 1.08999 * 109.47514 * 59.99929 * 1 2 3 32 32 H 1.08998 * 109.47435 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46664 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47129 * 300.00306 * 3 2 1 35 35 H 1.08999 * 109.47151 * 60.00158 * 3 2 1 36 36 H 1.09000 * 109.77379 * 300.17714 * 7 6 4 37 37 H 1.09007 * 109.77050 * 60.92791 * 7 6 4 38 38 H 1.08993 * 109.76580 * 247.19623 * 10 8 7 39 39 H 1.08997 * 109.75962 * 7.91882 * 10 8 7 40 40 H 0.97005 * 119.99921 * 180.02562 * 15 14 12 41 41 H 1.09002 * 110.01200 * 222.34127 * 20 11 10 42 42 H 1.09007 * 110.00523 * 100.97552 * 20 11 10 43 43 H 1.09007 * 110.02315 * 280.77112 * 23 6 4 44 44 H 1.08996 * 110.02689 * 42.18319 * 23 6 4 45 45 H 1.09008 * 109.45916 * 305.85087 * 25 24 2 46 46 H 1.09005 * 109.46949 * 65.82882 * 25 24 2 47 47 H 1.08992 * 109.50525 * 60.75143 * 26 25 24 48 48 H 1.09002 * 109.50674 * 180.87607 * 26 25 24 49 49 H 1.08994 * 109.53408 * 297.76483 * 27 26 25 50 50 H 1.08999 * 109.57412 * 177.60159 * 27 26 25 51 51 H 1.09002 * 109.50693 * 182.39806 * 28 27 26 52 52 H 1.09006 * 109.53639 * 62.29652 * 28 27 26 53 53 H 1.09003 * 109.46145 * 294.17981 * 29 24 2 54 54 H 1.09001 * 109.46151 * 54.15017 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.2922 -0.8829 -2.1757 6 7 3.3039 -1.1539 -1.2806 7 6 4.2667 -1.0962 -0.1756 8 6 5.5926 -1.6959 -0.6710 9 1 6.4611 -1.1410 -0.3158 10 6 5.6430 -3.1887 -0.3091 11 7 5.9508 -3.9409 -1.5297 12 6 6.0636 -5.3031 -1.6131 13 1 6.2946 -5.7688 -2.5597 14 6 5.8812 -6.0853 -0.4809 15 7 5.5993 -5.5177 0.6726 16 14 6.0358 -7.9433 -0.5945 17 1 6.3556 -8.3289 -1.9925 18 1 7.1210 -8.4058 0.3076 19 1 4.7533 -8.5725 -0.1891 20 6 6.1193 -3.0054 -2.6476 21 6 5.4624 -1.6808 -2.2196 22 1 5.9232 -0.8078 -2.6817 23 6 3.9407 -1.7760 -2.4476 24 7 2.0197 -0.6924 1.1994 25 6 1.5488 -0.0267 2.4206 26 6 2.1939 -0.6843 3.6427 27 6 1.8217 -2.1693 3.6730 28 6 2.2801 -2.8288 2.3694 29 6 1.6328 -2.1089 1.1841 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 4.4203 -0.0601 0.1259 37 1 3.8933 -1.6748 0.6694 38 1 6.4196 -3.3614 0.4359 39 1 4.6773 -3.5050 0.0851 40 1 5.4721 -6.0642 1.4639 41 1 5.6264 -3.3956 -3.5381 42 1 7.1797 -2.8488 -2.8462 43 1 3.6368 -2.8199 -2.5264 44 1 3.6657 -1.2373 -3.3543 45 1 1.8235 1.0278 2.3883 46 1 0.4648 -0.1176 2.4891 47 1 3.2773 -0.5817 3.5817 48 1 1.8324 -0.2002 4.5499 49 1 0.7412 -2.2721 3.7729 50 1 2.3132 -2.6518 4.5177 51 1 1.9801 -3.8767 2.3665 52 1 3.3650 -2.7605 2.2882 53 1 0.5483 -2.1900 1.2581 54 1 1.9685 -2.5671 0.2537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048820331.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:28 Heat of formation + Delta-G solvation = -11.247866 kcal Electronic energy + Delta-G solvation = -32856.183985 eV Core-core repulsion = 29020.908696 eV Total energy + Delta-G solvation = -3835.275289 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.12207 -40.38881 -39.20083 -36.54571 -35.95810 -34.07625 -32.03766 -31.61378 -31.37169 -31.02438 -28.35386 -27.48001 -27.04727 -25.64032 -24.67538 -23.88626 -22.46931 -21.79185 -20.82204 -20.36650 -19.72811 -18.83897 -18.28982 -17.46959 -16.91873 -16.47786 -16.27440 -15.89667 -15.61396 -15.52952 -15.47060 -15.08958 -14.60360 -14.52066 -14.43596 -14.20059 -14.02305 -13.63758 -13.56247 -13.44719 -13.29232 -13.17138 -12.96870 -12.90864 -12.88134 -12.73589 -12.68070 -12.62250 -12.31861 -11.94715 -11.91275 -11.81831 -11.69176 -11.56122 -11.48752 -11.36878 -11.26901 -11.14359 -10.77274 -10.61357 -9.54023 -9.23272 -8.81933 -7.81626 -5.15425 1.44077 1.44914 1.52815 1.54352 2.07778 2.49796 2.77527 3.33289 3.36940 3.55252 3.70080 3.84752 3.87189 3.90424 3.98399 4.02369 4.06350 4.13461 4.35466 4.36184 4.37361 4.38869 4.51781 4.60722 4.62234 4.63897 4.69727 4.72452 4.75263 4.79389 4.82741 4.87825 4.96830 4.99500 5.04893 5.07281 5.08606 5.13803 5.14998 5.21927 5.27978 5.33450 5.39692 5.43377 5.45323 5.51813 5.58693 5.74202 5.85640 5.95929 6.12403 6.26094 6.61572 7.13622 7.16621 7.84237 8.45641 9.27355 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.012274 B = 0.004757 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.787208 B = 5884.694846 C = 7132.849488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 C -0.132 4.132 4 C 0.532 3.468 5 O -0.594 6.594 6 N -0.595 5.595 7 C 0.129 3.871 8 C -0.120 4.120 9 H 0.115 0.885 10 C 0.203 3.797 11 N -0.624 5.624 12 C -0.242 4.242 13 H 0.076 0.924 14 C -0.059 4.059 15 N -0.938 5.938 16 Si 0.969 3.031 17 H -0.270 1.270 18 H -0.290 1.290 19 H -0.297 1.297 20 C 0.139 3.861 21 C -0.092 4.092 22 H 0.130 0.870 23 C 0.122 3.878 24 N -0.516 5.516 25 C 0.049 3.951 26 C -0.110 4.110 27 C -0.114 4.114 28 C -0.109 4.109 29 C 0.061 3.939 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.005 0.995 39 H 0.014 0.986 40 H 0.245 0.755 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.030 0.970 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.044 0.956 47 H 0.067 0.933 48 H 0.090 0.910 49 H 0.062 0.938 50 H 0.065 0.935 51 H 0.045 0.955 52 H 0.056 0.944 53 H 0.035 0.965 54 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.800 17.792 5.780 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.006 3.994 3 C -0.189 4.189 4 C 0.321 3.679 5 O -0.475 6.475 6 N -0.325 5.325 7 C 0.007 3.993 8 C -0.140 4.140 9 H 0.133 0.867 10 C 0.078 3.922 11 N -0.350 5.350 12 C -0.371 4.371 13 H 0.094 0.906 14 C -0.252 4.252 15 N -0.587 5.587 16 Si 0.798 3.202 17 H -0.195 1.195 18 H -0.217 1.217 19 H -0.224 1.224 20 C 0.013 3.987 21 C -0.111 4.111 22 H 0.148 0.852 23 C -0.001 4.001 24 N -0.242 5.242 25 C -0.077 4.077 26 C -0.147 4.147 27 C -0.152 4.152 28 C -0.147 4.147 29 C -0.067 4.067 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.023 0.977 39 H 0.033 0.967 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.122 0.878 46 H 0.062 0.938 47 H 0.086 0.914 48 H 0.109 0.891 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.064 0.936 52 H 0.075 0.925 53 H 0.053 0.947 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.745 17.572 5.404 19.582 hybrid contribution -0.764 -2.192 -0.354 2.348 sum -7.509 15.379 5.050 17.844 Atomic orbital electron populations 1.22210 0.94047 1.01857 1.03713 1.21237 0.94575 0.96293 0.87321 1.21883 1.02557 0.90490 1.03987 1.20701 0.79904 0.78017 0.89265 1.90648 1.56173 1.59941 1.40732 1.48265 1.11634 1.58054 1.14585 1.22111 0.86170 1.01944 0.89044 1.23166 0.98530 0.97126 0.95155 0.86721 1.20762 0.97220 0.86644 0.87570 1.44508 1.83053 1.01854 1.05581 1.19389 1.40685 0.82041 0.95035 0.90602 1.25501 1.02387 1.01780 0.95569 1.70176 1.55374 1.33999 0.99166 0.85149 0.76626 0.80842 0.77563 1.19462 1.21657 1.22394 1.21349 0.97414 0.89110 0.90831 1.22921 0.93179 0.98696 0.96322 0.85182 1.21815 0.92712 0.96350 0.89257 1.62370 1.59001 1.01147 1.01731 1.22368 0.97846 0.99548 0.87984 1.21568 1.01507 0.94196 0.97451 1.21543 1.00799 0.96791 0.96035 1.21473 1.00587 0.97887 0.94785 1.21950 0.97396 0.89065 0.98261 0.88818 0.91708 0.94321 0.90874 0.91671 0.88333 0.89169 0.89774 0.97676 0.96740 0.94578 0.94954 0.95110 0.95169 0.90983 0.87780 0.93830 0.91449 0.89147 0.91887 0.91590 0.93589 0.92492 0.94670 0.94613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 7.23 71.98 0.52 -3.14 16 2 C 0.10 2.38 0.34 2.78 0.00 2.38 16 3 C -0.13 -2.27 8.22 71.98 0.59 -1.68 16 4 C 0.53 17.90 5.20 87.66 0.46 18.36 16 5 O -0.59 -24.42 16.32 -3.03 -0.05 -24.47 16 6 N -0.59 -20.01 2.87 -817.00 -2.34 -22.35 16 7 C 0.13 3.95 4.74 86.59 0.41 4.36 16 8 C -0.12 -4.09 4.02 -9.49 -0.04 -4.13 16 9 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 10 C 0.20 9.66 4.75 86.58 0.41 10.07 16 11 N -0.62 -31.81 3.37 -697.87 -2.35 -34.16 16 12 C -0.24 -13.71 10.25 84.03 0.86 -12.85 16 13 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 14 C -0.06 -3.35 5.48 84.86 0.47 -2.88 16 15 N -0.94 -55.52 10.25 21.65 0.22 -55.29 16 16 Si 0.97 46.50 29.55 68.60 2.03 48.53 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 20 C 0.14 5.58 6.37 86.65 0.55 6.13 16 21 C -0.09 -2.97 4.19 -9.26 -0.04 -3.01 16 22 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 23 C 0.12 4.40 6.08 86.72 0.53 4.93 16 24 N -0.52 -12.04 2.20 -851.06 -1.87 -13.92 16 25 C 0.05 0.81 4.64 86.33 0.40 1.21 16 26 C -0.11 -1.83 6.09 30.65 0.19 -1.64 16 27 C -0.11 -2.44 6.00 30.67 0.18 -2.25 16 28 C -0.11 -3.26 5.96 30.64 0.18 -3.08 16 29 C 0.06 1.84 3.63 86.32 0.31 2.15 16 30 H 0.09 1.55 6.54 -2.38 -0.02 1.53 16 31 H 0.06 1.57 7.91 -2.39 -0.02 1.55 16 32 H 0.04 1.05 6.63 -2.39 -0.02 1.03 16 33 H 0.07 1.26 6.55 -2.39 -0.02 1.25 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 1.13 6.28 -2.39 -0.01 1.12 16 36 H 0.09 2.20 6.60 -2.39 -0.02 2.19 16 37 H 0.08 2.89 3.46 -2.38 -0.01 2.88 16 38 H 0.01 0.27 7.46 -2.39 -0.02 0.25 16 39 H 0.01 0.79 6.50 -2.39 -0.02 0.77 16 40 H 0.24 14.14 8.31 -92.70 -0.77 13.37 16 41 H 0.03 1.32 7.95 -2.39 -0.02 1.30 16 42 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.03 1.35 7.72 -2.38 -0.02 1.33 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.10 1.24 6.01 -2.38 -0.01 1.23 16 46 H 0.04 0.68 6.63 -2.38 -0.02 0.67 16 47 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 52 H 0.06 1.98 7.04 -2.38 -0.02 1.96 16 53 H 0.04 1.02 6.71 -2.39 -0.02 1.00 16 54 H 0.04 1.38 6.09 -2.39 -0.01 1.37 16 Total: -1.00 -71.04 382.69 2.50 -68.54 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.88 Total: 18.20 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 5.99 Total: 14.93 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -6.34 Total: -125.72 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.05 Total: -24.47 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -71.04 2.50 -68.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048820331.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.289 kcal (2) G-P(sol) polarization free energy of solvation -71.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds