Wall clock time and date at job start Tue Mar 31 2020 19:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46833 * 2 1 4 4 N 1.46905 * 109.46968 * 119.99709 * 2 1 3 5 5 C 1.47441 * 110.99713 * 66.09885 * 4 2 1 6 6 C 1.54318 * 107.23478 * 123.25642 * 5 4 2 7 7 C 1.55142 * 103.01701 * 22.28290 * 6 5 4 8 8 C 1.47841 * 110.99871 * 186.94180 * 4 2 1 9 9 H 1.08995 * 110.37212 * 332.57513 * 8 4 2 10 10 C 1.52999 * 110.37249 * 94.80792 * 8 4 2 11 11 C 1.50702 * 109.46714 * 185.52723 * 10 8 4 12 12 O 1.21281 * 120.00177 * 5.97498 * 11 10 8 13 13 N 1.34780 * 119.99678 * 185.97241 * 11 10 8 14 14 C 1.46662 * 125.33005 * 180.02562 * 13 11 10 15 15 C 1.53674 * 107.96590 * 179.31344 * 14 13 11 16 16 H 1.09003 * 112.77477 * 106.01995 * 15 14 13 17 17 C 1.53983 * 109.29817 * 233.05837 * 15 14 13 18 18 N 1.46761 * 106.67498 * 82.34505 * 17 15 14 19 19 C 1.36932 * 125.33538 * 198.45422 * 18 17 15 20 20 H 1.08005 * 120.00037 * 163.00802 * 19 18 17 21 21 C 1.38811 * 120.00190 * 343.00750 * 19 18 17 22 22 N 1.31622 * 119.99699 * 351.94227 * 21 19 18 23 23 Si 1.86794 * 120.00319 * 171.94495 * 21 19 18 24 24 H 1.48504 * 109.47223 * 94.92950 * 23 21 19 25 25 H 1.48498 * 109.47319 * 214.92830 * 23 21 19 26 26 H 1.48500 * 109.47141 * 334.93095 * 23 21 19 27 27 C 1.46661 * 109.32893 * 18.44994 * 18 17 15 28 28 C 1.53673 * 107.97175 * 359.29372 * 27 18 17 29 29 H 1.09001 * 113.31490 * 106.33338 * 28 27 18 30 30 C 1.46756 * 125.33668 * 0.02586 * 13 11 10 31 31 H 1.08998 * 109.47043 * 60.00460 * 1 2 3 32 32 H 1.09001 * 109.46499 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47001 * 299.99888 * 1 2 3 34 34 H 1.08996 * 109.47001 * 240.00112 * 2 1 3 35 35 H 1.09003 * 109.47219 * 185.76682 * 3 2 1 36 36 H 1.08997 * 109.47176 * 305.77313 * 3 2 1 37 37 H 1.09005 * 109.46899 * 65.77204 * 3 2 1 38 38 H 1.09002 * 109.89034 * 242.66020 * 5 4 2 39 39 H 1.09000 * 109.89477 * 3.68591 * 5 4 2 40 40 H 1.08997 * 110.70678 * 140.66067 * 6 5 4 41 41 H 1.08997 * 110.70684 * 263.72692 * 6 5 4 42 42 H 1.08997 * 110.99282 * 206.25507 * 7 6 5 43 43 H 1.09003 * 110.99359 * 82.43447 * 7 6 5 44 44 H 1.08999 * 109.46909 * 65.53419 * 10 8 4 45 45 H 1.08994 * 109.47623 * 305.52774 * 10 8 4 46 46 H 1.09001 * 109.76887 * 59.68888 * 14 13 11 47 47 H 1.08998 * 109.78290 * 298.94853 * 14 13 11 48 48 H 1.08997 * 110.02314 * 201.64891 * 17 15 14 49 49 H 1.08997 * 110.01914 * 323.04300 * 17 15 14 50 50 H 0.97000 * 120.00138 * 180.02562 * 22 21 19 51 51 H 1.09001 * 109.76747 * 239.65861 * 27 18 17 52 52 H 1.09001 * 109.77655 * 118.93389 * 27 18 17 53 53 H 1.08998 * 110.01696 * 317.73634 * 30 13 11 54 54 H 1.09005 * 110.01524 * 79.07447 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.6700 -2.1243 1.1627 6 6 2.9861 -2.9199 1.2910 7 6 3.9453 -1.9025 1.9631 8 6 3.4881 -0.5694 1.3200 9 1 3.9405 -0.4460 0.3361 10 6 3.8513 0.6103 2.2240 11 6 5.3462 0.8011 2.2245 12 8 6.0424 0.1382 1.4849 13 7 5.9095 1.7084 3.0467 14 6 7.3457 1.9895 3.1428 15 6 7.5425 3.1001 4.1866 16 1 7.9547 2.7290 5.1249 17 6 8.3694 4.2412 3.5658 18 7 7.4321 5.0731 2.8020 19 6 7.7810 5.9636 1.8221 20 1 7.0343 6.3264 1.1313 21 6 9.0945 6.4002 1.7166 22 7 9.9693 6.0858 2.6484 23 14 9.6205 7.4337 0.2522 24 1 9.5425 8.8732 0.6087 25 1 11.0167 7.0909 -0.1197 26 1 8.7205 7.1588 -0.8966 27 6 6.0632 4.8011 3.2527 28 6 6.1298 3.7271 4.3498 29 1 5.9516 4.1208 5.3504 30 6 5.1819 2.5697 3.9861 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.1251 1.4443 -0.1033 36 1 1.5947 1.9853 -0.8338 37 1 1.7635 1.9256 0.9372 38 1 1.0081 -2.3659 1.9944 39 1 1.1805 -2.3624 0.2183 40 1 2.8470 -3.7953 1.9253 41 1 3.3570 -3.2124 0.3087 42 1 4.9835 -2.1207 1.7131 43 1 3.8009 -1.8845 3.0434 44 1 3.5105 0.4083 3.2394 45 1 3.3698 1.5147 1.8522 46 1 7.7218 2.3222 2.1753 47 1 7.8774 1.0910 3.4558 48 1 8.8380 4.8329 4.3521 49 1 9.1310 3.8318 2.9022 50 1 10.8871 6.3911 2.5749 51 1 5.4652 4.4379 2.4169 52 1 5.6196 5.7119 3.6549 53 1 4.2807 2.9598 3.5132 54 1 4.9190 2.0065 4.8817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048862677.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:18 Heat of formation + Delta-G solvation = -25.655083 kcal Electronic energy + Delta-G solvation = -30863.890346 eV Core-core repulsion = 27027.990313 eV Total energy + Delta-G solvation = -3835.900033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.66428 -40.62095 -39.30103 -36.56049 -35.35639 -34.12639 -33.07664 -31.62386 -31.31902 -30.09728 -28.35497 -27.64834 -27.14334 -26.47422 -24.42546 -22.60472 -21.96695 -21.75745 -20.87668 -20.72637 -20.14958 -18.85087 -18.07334 -17.35452 -17.21495 -16.92413 -16.69658 -16.10151 -15.85954 -15.60107 -15.39683 -14.73546 -14.66936 -14.53296 -14.19566 -14.11992 -14.06878 -13.70235 -13.61012 -13.37381 -13.25979 -13.11134 -13.00938 -12.97265 -12.75784 -12.72615 -12.66868 -12.26381 -12.05608 -12.01903 -11.94873 -11.90015 -11.76603 -11.69679 -11.60844 -11.56833 -11.50787 -11.43948 -10.85478 -10.69224 -9.59783 -9.31314 -8.79397 -7.91328 -5.29097 1.41760 1.43511 1.52583 1.64411 1.99359 2.46224 2.92885 3.26093 3.42406 3.55388 3.65226 3.68629 3.75541 3.94476 3.95955 3.99418 4.11801 4.13781 4.20434 4.25684 4.32937 4.38325 4.42589 4.46133 4.53371 4.62848 4.68916 4.76152 4.79310 4.81468 4.85226 4.89937 4.91462 4.96678 4.97535 5.00400 5.01821 5.03714 5.14275 5.15061 5.17594 5.27770 5.29253 5.37477 5.37560 5.41901 5.44430 5.55164 5.71765 6.01174 6.18826 6.21282 6.59056 7.08057 7.17612 7.76805 8.41599 9.19513 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.002863 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.005801 B = 9776.849816 C =10454.891209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.070 3.930 3 C -0.152 4.152 4 N -0.520 5.520 5 C 0.045 3.955 6 C -0.138 4.138 7 C -0.121 4.121 8 C 0.093 3.907 9 H 0.035 0.965 10 C -0.113 4.113 11 C 0.521 3.479 12 O -0.590 6.590 13 N -0.610 5.610 14 C 0.128 3.872 15 C -0.108 4.108 16 H 0.123 0.877 17 C 0.192 3.808 18 N -0.619 5.619 19 C -0.247 4.247 20 H 0.071 0.929 21 C -0.058 4.058 22 N -0.942 5.942 23 Si 0.972 3.028 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.274 1.274 27 C 0.138 3.862 28 C -0.094 4.094 29 H 0.132 0.868 30 C 0.113 3.887 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.120 0.880 45 H 0.108 0.892 46 H 0.026 0.974 47 H 0.064 0.936 48 H 0.014 0.986 49 H 0.007 0.993 50 H 0.249 0.751 51 H 0.018 0.982 52 H 0.026 0.974 53 H 0.091 0.909 54 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.862 -15.874 3.212 26.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.039 4.039 3 C -0.209 4.209 4 N -0.245 5.245 5 C -0.083 4.083 6 C -0.177 4.177 7 C -0.160 4.160 8 C -0.016 4.016 9 H 0.053 0.947 10 C -0.153 4.153 11 C 0.311 3.689 12 O -0.471 6.471 13 N -0.343 5.343 14 C 0.005 3.995 15 C -0.128 4.128 16 H 0.141 0.859 17 C 0.067 3.933 18 N -0.345 5.345 19 C -0.377 4.377 20 H 0.089 0.911 21 C -0.252 4.252 22 N -0.589 5.589 23 Si 0.800 3.200 24 H -0.207 1.207 25 H -0.220 1.220 26 H -0.199 1.199 27 C 0.013 3.987 28 C -0.113 4.113 29 H 0.150 0.850 30 C -0.009 4.009 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.138 0.862 45 H 0.126 0.874 46 H 0.044 0.956 47 H 0.082 0.918 48 H 0.032 0.968 49 H 0.026 0.974 50 H 0.058 0.942 51 H 0.036 0.964 52 H 0.044 0.956 53 H 0.109 0.891 54 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.648 -15.932 3.113 26.265 hybrid contribution 1.744 0.607 -1.903 2.651 sum -18.904 -15.325 1.210 24.365 Atomic orbital electron populations 1.21790 0.92474 1.02401 1.02598 1.21846 0.96990 0.94673 0.90362 1.22048 0.99893 0.95850 1.03107 1.63538 1.10473 1.12325 1.38189 1.22862 0.97097 0.86040 1.02280 1.22773 0.95206 0.98818 1.00873 1.22690 0.98921 0.93721 1.00633 1.22051 0.87805 0.94668 0.97059 0.94683 1.21725 0.88722 1.00965 1.03853 1.20990 0.91733 0.78055 0.78112 1.90659 1.65887 1.48511 1.42040 1.48385 1.07717 1.38196 1.40016 1.21561 0.82272 0.97479 0.98174 1.23036 0.97225 0.94188 0.98368 0.85929 1.20775 0.90705 0.88880 0.92945 1.44415 1.02301 1.45385 1.42392 1.19272 0.94446 1.18073 1.05885 0.91138 1.25694 0.97075 1.01461 1.00963 1.70121 1.03450 1.50683 1.34693 0.85174 0.77050 0.78578 0.79207 1.20731 1.21970 1.19857 1.21364 0.86690 0.96162 0.94503 1.22884 0.93777 0.94503 1.00185 0.84973 1.22227 0.94852 0.90299 0.93514 0.91557 0.92100 0.91612 0.95240 0.94589 0.91230 0.90823 0.89097 0.92008 0.89028 0.92327 0.92518 0.89971 0.86234 0.87403 0.95586 0.91767 0.96800 0.97420 0.94212 0.96447 0.95592 0.89077 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.17 71.99 0.66 -1.11 16 2 C 0.07 1.22 2.25 44.92 0.10 1.32 16 3 C -0.15 -2.86 7.66 71.98 0.55 -2.30 16 4 N -0.52 -9.42 4.70 -835.62 -3.93 -13.35 16 5 C 0.04 0.66 6.18 86.65 0.54 1.20 16 6 C -0.14 -2.24 6.94 31.78 0.22 -2.02 16 7 C -0.12 -2.56 5.94 31.98 0.19 -2.37 16 8 C 0.09 2.10 1.40 45.39 0.06 2.17 16 9 H 0.04 1.02 6.89 -2.39 -0.02 1.00 16 10 C -0.11 -2.49 4.05 29.85 0.12 -2.37 16 11 C 0.52 16.18 7.60 87.66 0.67 16.85 16 12 O -0.59 -23.38 15.25 -3.03 -0.05 -23.42 16 13 N -0.61 -18.43 3.31 -817.55 -2.70 -21.14 16 14 C 0.13 4.63 6.24 86.58 0.54 5.17 16 15 C -0.11 -3.69 4.09 -9.41 -0.04 -3.73 16 16 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 17 C 0.19 9.29 4.53 86.66 0.39 9.68 16 18 N -0.62 -31.74 3.37 -697.71 -2.35 -34.09 16 19 C -0.25 -14.17 10.18 84.03 0.86 -13.32 16 20 H 0.07 3.95 7.84 -2.91 -0.02 3.92 16 21 C -0.06 -3.34 5.40 84.86 0.46 -2.88 16 22 N -0.94 -57.08 10.85 21.65 0.23 -56.85 16 23 Si 0.97 46.76 29.56 68.60 2.03 48.79 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 27 C 0.14 5.39 6.62 86.58 0.57 5.97 16 28 C -0.09 -2.69 4.09 -9.41 -0.04 -2.72 16 29 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 30 C 0.11 2.51 5.76 86.66 0.50 3.01 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.71 6.88 -2.39 -0.02 0.69 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.03 0.58 8.07 -2.39 -0.02 0.56 16 35 H 0.04 0.84 6.20 -2.39 -0.01 0.83 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.29 7.19 -2.38 -0.02 1.27 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 0.84 6.72 -2.39 -0.02 0.83 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.49 7.51 -2.39 -0.02 1.47 16 43 H 0.08 1.54 7.96 -2.39 -0.02 1.52 16 44 H 0.12 2.05 7.99 -2.39 -0.02 2.03 16 45 H 0.11 2.27 5.08 -2.39 -0.01 2.26 16 46 H 0.03 1.19 7.47 -2.39 -0.02 1.17 16 47 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.01 0.75 7.59 -2.39 -0.02 0.73 16 49 H 0.01 0.41 7.29 -2.39 -0.02 0.40 16 50 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 51 H 0.02 0.70 7.47 -2.39 -0.02 0.68 16 52 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.09 1.76 7.43 -2.39 -0.02 1.74 16 54 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -73.77 399.92 0.44 -73.33 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.86 Total: 14.19 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 6.35 Total: 12.54 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -8.75 Total: -125.43 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -73.77 0.44 -73.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048862677.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.678 kcal (2) G-P(sol) polarization free energy of solvation -73.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds