Wall clock time and date at job start Tue Mar 31 2020 19:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46834 * 2 1 4 4 N 1.46903 * 109.47039 * 179.97438 * 3 2 1 5 5 C 1.46846 * 110.99717 * 66.04791 * 4 3 2 6 6 C 1.53036 * 109.52384 * 174.15896 * 5 4 3 7 7 C 1.53123 * 109.27788 * 59.18000 * 6 5 4 8 8 C 1.53124 * 109.15980 * 302.34618 * 7 6 5 9 9 H 1.08997 * 109.50272 * 297.71554 * 8 7 6 10 10 C 1.50700 * 109.50413 * 177.59292 * 8 7 6 11 11 O 1.21273 * 120.00342 * 240.19983 * 10 8 7 12 12 N 1.34779 * 119.99667 * 60.19696 * 10 8 7 13 13 C 1.46753 * 125.33681 * 359.69272 * 12 10 8 14 14 C 1.54165 * 106.58846 * 161.45896 * 13 12 10 15 15 H 1.09003 * 113.22960 * 151.14142 * 14 13 12 16 16 C 1.55512 * 110.00386 * 278.72700 * 14 13 12 17 17 N 1.46653 * 108.14059 * 126.67471 * 16 14 13 18 18 C 1.36944 * 125.33387 * 180.65010 * 17 16 14 19 19 H 1.08000 * 119.99836 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99965 * 0.04248 * 18 17 16 21 21 N 1.31622 * 119.99887 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47032 * 120.00161 * 22 20 18 25 25 H 1.48496 * 109.47197 * 240.00315 * 22 20 18 26 26 C 1.46757 * 109.33235 * 0.69073 * 17 16 14 27 27 C 1.53982 * 106.67794 * 341.55418 * 26 17 16 28 28 H 1.08997 * 112.79556 * 151.33418 * 27 26 17 29 29 C 1.46659 * 125.33385 * 180.02562 * 12 10 8 30 30 C 1.46842 * 111.00077 * 301.84090 * 4 3 2 31 31 H 1.09006 * 109.47151 * 60.00391 * 1 2 3 32 32 H 1.08999 * 109.47319 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47588 * 299.99913 * 1 2 3 34 34 H 1.08997 * 109.47588 * 240.00087 * 2 1 3 35 35 H 1.08997 * 109.47341 * 120.00139 * 2 1 3 36 36 H 1.09007 * 109.47167 * 60.00471 * 3 2 1 37 37 H 1.08994 * 109.47553 * 299.99740 * 3 2 1 38 38 H 1.08999 * 109.46089 * 54.14588 * 5 4 3 39 39 H 1.08994 * 109.45639 * 294.17306 * 5 4 3 40 40 H 1.09000 * 109.50632 * 179.12292 * 6 5 4 41 41 H 1.09006 * 109.50216 * 299.24086 * 6 5 4 42 42 H 1.09000 * 109.52181 * 62.25097 * 7 6 5 43 43 H 1.08997 * 109.52376 * 182.44203 * 7 6 5 44 44 H 1.08998 * 110.02165 * 280.88776 * 13 12 10 45 45 H 1.09005 * 110.01630 * 42.27660 * 13 12 10 46 46 H 1.09004 * 109.69820 * 6.98666 * 16 14 13 47 47 H 1.08995 * 109.66905 * 246.35191 * 16 14 13 48 48 H 0.96999 * 119.99550 * 179.97438 * 21 20 18 49 49 H 1.09003 * 110.01362 * 222.25402 * 26 17 16 50 50 H 1.08999 * 110.01901 * 100.86486 * 26 17 16 51 51 H 1.09007 * 109.76346 * 300.31377 * 29 12 10 52 52 H 1.08997 * 109.76743 * 61.03557 * 29 12 10 53 53 H 1.09006 * 109.46447 * 305.84971 * 30 4 3 54 54 H 1.08994 * 109.46873 * 65.82005 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0356 0.8858 -1.2520 6 6 5.5585 1.0349 -1.2774 7 6 6.1588 0.2976 -0.0771 8 6 5.5576 0.8637 1.2124 9 1 5.8207 1.9174 1.3046 10 6 6.0988 0.1036 2.3958 11 8 5.3414 -0.4948 3.1300 12 7 7.4245 0.0889 2.6381 13 6 8.4434 0.7639 1.8259 14 6 9.7043 0.8762 2.7057 15 1 10.6305 0.8813 2.1310 16 6 9.5765 2.0928 3.6659 17 7 9.8108 1.6209 5.0345 18 6 9.7698 2.4011 6.1592 19 1 9.9570 1.9621 7.1280 20 6 9.4872 3.7561 6.0540 21 7 9.2582 4.2908 4.8733 22 14 9.4306 4.8202 7.5882 23 1 9.7208 3.9847 8.7811 24 1 10.4462 5.8983 7.4805 25 1 8.0804 5.4236 7.7225 26 6 10.0970 0.1817 5.0099 27 6 9.5867 -0.3473 3.6568 28 1 10.1445 -1.2152 3.3051 29 6 8.0756 -0.6100 3.7510 30 6 4.0347 0.7195 1.1655 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8899 36 1 1.6766 1.9563 0.8901 37 1 1.6766 1.9564 -0.8899 38 1 3.6041 1.4217 -2.0973 39 1 3.7729 -0.1698 -1.3188 40 1 5.9507 0.6076 -2.2003 41 1 5.8217 2.0914 -1.2243 42 1 5.9287 -0.7653 -0.1503 43 1 7.2397 0.4375 -0.0671 44 1 8.6590 0.1762 0.9336 45 1 8.0970 1.7581 1.5435 46 1 8.5758 2.5180 3.5888 47 1 10.3187 2.8466 3.4037 48 1 9.0604 5.2376 4.7999 49 1 9.5744 -0.3166 5.8264 50 1 11.1705 0.0132 5.0956 51 1 7.6938 -0.2301 4.6987 52 1 7.8817 -1.6802 3.6782 53 1 3.6025 1.1347 2.0761 54 1 3.7720 -0.3354 1.0873 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049001462.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:16 Heat of formation + Delta-G solvation = -31.161440 kcal Electronic energy + Delta-G solvation = -30958.996361 eV Core-core repulsion = 27122.857555 eV Total energy + Delta-G solvation = -3836.138806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.81322 -40.39401 -39.17672 -36.63175 -35.93954 -34.14909 -32.77158 -32.08852 -31.59264 -31.06363 -27.56992 -27.40649 -26.88603 -25.42741 -24.32252 -23.84463 -22.54481 -21.78119 -20.86017 -20.62042 -20.11504 -18.87277 -18.09857 -17.39930 -17.06742 -16.70053 -16.34986 -16.21369 -15.75374 -15.53702 -15.48185 -15.25697 -14.94562 -14.66231 -14.38842 -14.28634 -13.92177 -13.79280 -13.68340 -13.58586 -13.38092 -13.31139 -12.97482 -12.78959 -12.75905 -12.70071 -12.62316 -12.49367 -12.31428 -11.98991 -11.91390 -11.87517 -11.80528 -11.63515 -11.56933 -11.44032 -11.35503 -11.18660 -10.81800 -10.66416 -9.61821 -9.22979 -8.86233 -7.86538 -5.20274 1.42437 1.43761 1.53320 1.55617 1.97669 2.47400 2.94742 3.31025 3.37825 3.50613 3.62337 3.74867 3.82681 3.86005 3.93684 3.97558 4.05138 4.14619 4.23023 4.26175 4.28806 4.32660 4.35762 4.53516 4.57943 4.61837 4.63613 4.67388 4.73342 4.79315 4.82525 4.83736 4.88606 4.94076 4.94668 4.97857 5.01130 5.06944 5.09567 5.14112 5.19986 5.21904 5.29752 5.35716 5.41217 5.42971 5.47057 5.69001 5.80203 6.03948 6.17281 6.22280 6.52258 7.09228 7.12491 7.80873 8.41173 9.23092 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.013818 B = 0.003044 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.900480 B = 9196.753787 C = 9959.908035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.160 4.160 3 C 0.056 3.944 4 N -0.546 5.546 5 C 0.049 3.951 6 C -0.110 4.110 7 C -0.111 4.111 8 C -0.093 4.093 9 H 0.097 0.903 10 C 0.526 3.474 11 O -0.592 6.592 12 N -0.606 5.606 13 C 0.115 3.885 14 C -0.114 4.114 15 H 0.129 0.871 16 C 0.197 3.803 17 N -0.625 5.625 18 C -0.241 4.241 19 H 0.078 0.922 20 C -0.064 4.064 21 N -0.945 5.945 22 Si 0.973 3.027 23 H -0.268 1.268 24 H -0.288 1.288 25 H -0.297 1.297 26 C 0.136 3.864 27 C -0.092 4.092 28 H 0.138 0.862 29 C 0.122 3.878 30 C 0.087 3.913 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.037 0.963 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.111 0.889 45 H 0.072 0.928 46 H 0.007 0.993 47 H 0.008 0.992 48 H 0.245 0.755 49 H 0.031 0.969 50 H 0.034 0.966 51 H 0.028 0.972 52 H 0.075 0.925 53 H 0.052 0.948 54 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 -10.413 -18.337 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.199 4.199 3 C -0.072 4.072 4 N -0.269 5.269 5 C -0.078 4.078 6 C -0.148 4.148 7 C -0.149 4.149 8 C -0.114 4.114 9 H 0.115 0.885 10 C 0.316 3.684 11 O -0.474 6.474 12 N -0.337 5.337 13 C -0.006 4.006 14 C -0.134 4.134 15 H 0.147 0.853 16 C 0.072 3.928 17 N -0.352 5.352 18 C -0.370 4.370 19 H 0.096 0.904 20 C -0.258 4.258 21 N -0.595 5.595 22 Si 0.802 3.198 23 H -0.192 1.192 24 H -0.215 1.215 25 H -0.224 1.224 26 C 0.011 3.989 27 C -0.112 4.112 28 H 0.156 0.844 29 C 0.000 4.000 30 C -0.041 4.041 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.055 0.945 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.090 0.910 46 H 0.025 0.975 47 H 0.027 0.973 48 H 0.055 0.945 49 H 0.049 0.951 50 H 0.052 0.948 51 H 0.046 0.954 52 H 0.093 0.907 53 H 0.071 0.929 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.432 -10.032 -17.868 22.159 hybrid contribution -0.480 0.246 1.666 1.751 sum -8.912 -9.786 -16.202 20.921 Atomic orbital electron populations 1.21658 0.94249 1.02005 1.02320 1.22147 0.97729 0.98507 1.01528 1.22290 0.85847 0.95767 1.03260 1.62106 1.08086 1.54304 1.02404 1.22251 0.96021 0.98041 0.91519 1.21598 0.93975 1.01431 0.97785 1.21724 1.01638 0.99717 0.91807 1.21232 0.96371 1.00467 0.93351 0.88521 1.20824 0.80429 0.80556 0.86605 1.90634 1.57558 1.47673 1.51527 1.48263 1.05883 1.50881 1.28683 1.22270 0.86575 0.97812 0.93990 1.23539 0.98926 0.94775 0.96132 0.85310 1.21087 0.97179 0.92007 0.82546 1.44498 1.82863 1.04486 1.03326 1.19428 1.40395 0.90428 0.86758 0.90430 1.25578 1.02351 0.98120 0.99710 1.70172 1.55349 1.11287 1.22648 0.85085 0.76650 0.78756 0.79328 1.19236 1.21477 1.22392 1.21457 0.97607 0.84195 0.95633 1.22871 0.93624 0.99036 0.95631 0.84398 1.21710 0.92766 0.96472 0.89094 1.21579 0.92550 0.96485 0.93523 0.91401 0.92564 0.92914 0.91423 0.93706 0.91598 0.88833 0.89011 0.94517 0.88466 0.90991 0.91856 0.89092 0.87111 0.90995 0.97510 0.97344 0.94528 0.95095 0.94828 0.95352 0.90670 0.92920 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.91 71.98 0.71 -1.36 16 2 C -0.16 -2.82 5.24 30.59 0.16 -2.66 16 3 C 0.06 1.04 5.36 86.30 0.46 1.51 16 4 N -0.55 -11.93 4.86 -896.37 -4.35 -16.29 16 5 C 0.05 0.81 5.05 86.33 0.44 1.25 16 6 C -0.11 -1.69 6.09 30.65 0.19 -1.50 16 7 C -0.11 -2.15 5.07 30.68 0.16 -1.99 16 8 C -0.09 -2.55 2.07 -11.48 -0.02 -2.57 16 9 H 0.10 2.87 7.88 -2.39 -0.02 2.85 16 10 C 0.53 18.53 7.21 87.66 0.63 19.16 16 11 O -0.59 -25.44 16.29 -3.01 -0.05 -25.49 16 12 N -0.61 -19.98 3.31 -817.18 -2.70 -22.68 16 13 C 0.12 3.10 4.45 86.73 0.39 3.49 16 14 C -0.11 -3.58 4.16 -8.70 -0.04 -3.62 16 15 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 16 C 0.20 9.30 4.86 87.22 0.42 9.72 16 17 N -0.63 -31.91 3.38 -694.06 -2.34 -34.25 16 18 C -0.24 -13.75 10.25 84.03 0.86 -12.89 16 19 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 20 C -0.06 -3.73 5.48 84.86 0.47 -3.27 16 21 N -0.95 -57.15 10.25 21.65 0.22 -56.93 16 22 Si 0.97 47.04 29.55 68.60 2.03 49.07 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 26 C 0.14 5.36 6.40 86.66 0.55 5.92 16 27 C -0.09 -2.78 4.03 -9.41 -0.04 -2.82 16 28 H 0.14 2.93 8.14 -2.39 -0.02 2.92 16 29 C 0.12 4.20 6.23 86.57 0.54 4.74 16 30 C 0.09 2.40 3.41 86.33 0.29 2.69 16 31 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.10 6.68 -2.39 -0.02 1.09 16 35 H 0.04 0.99 6.50 -2.39 -0.02 0.98 16 36 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.09 1.40 8.06 -2.39 -0.02 1.38 16 38 H 0.09 1.22 8.06 -2.39 -0.02 1.20 16 39 H 0.04 0.61 6.75 -2.39 -0.02 0.59 16 40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 1.53 4.96 -2.39 -0.01 1.52 16 44 H 0.11 2.02 6.70 -2.39 -0.02 2.00 16 45 H 0.07 2.06 7.33 -2.38 -0.02 2.04 16 46 H 0.01 0.37 6.80 -2.38 -0.02 0.35 16 47 H 0.01 0.45 7.45 -2.39 -0.02 0.43 16 48 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 49 H 0.03 1.24 7.79 -2.39 -0.02 1.23 16 50 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.03 1.23 7.48 -2.38 -0.02 1.21 16 52 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 53 H 0.05 1.71 8.10 -2.38 -0.02 1.69 16 54 H 0.04 1.04 6.54 -2.39 -0.02 1.03 16 Total: -1.00 -74.78 397.00 -0.17 -74.95 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.86 Total: 15.83 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.17 Total: 15.79 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -9.18 Total: -130.15 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.49 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -74.78 -0.17 -74.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049001462.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.791 kcal (2) G-P(sol) polarization free energy of solvation -74.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds