Wall clock time and date at job start Tue Mar 31 2020 19:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46754 * 2 1 4 4 N 1.46902 * 109.46838 * 119.99317 * 2 1 3 5 5 C 1.46847 * 111.00183 * 306.77646 * 4 2 1 6 6 C 1.53035 * 109.52418 * 185.83779 * 5 4 2 7 7 C 1.53122 * 109.28248 * 300.82616 * 6 5 4 8 8 C 1.53117 * 109.16172 * 57.64744 * 7 6 5 9 9 C 1.46850 * 110.99940 * 70.98875 * 4 2 1 10 10 H 1.08996 * 109.45973 * 294.17175 * 9 4 2 11 11 C 1.50698 * 109.46217 * 54.14140 * 9 4 2 12 12 O 1.21287 * 119.99878 * 29.23465 * 11 9 4 13 13 N 1.34773 * 119.99982 * 209.22667 * 11 9 4 14 14 C 1.46659 * 125.33310 * 179.97438 * 13 11 9 15 15 C 1.53680 * 107.97074 * 180.71371 * 14 13 11 16 16 H 1.08994 * 112.77408 * 140.60974 * 15 14 13 17 17 C 1.53983 * 109.29845 * 266.93431 * 15 14 13 18 18 N 1.46756 * 106.67413 * 138.83472 * 17 15 14 19 19 C 1.36938 * 125.33322 * 161.58779 * 18 17 15 20 20 H 1.08002 * 119.99968 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00132 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99848 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00181 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46756 * 89.99961 * 23 21 19 25 25 H 1.48496 * 109.47062 * 210.00184 * 23 21 19 26 26 H 1.48502 * 109.47201 * 330.00579 * 23 21 19 27 27 C 1.46660 * 109.33276 * 341.54874 * 18 17 15 28 28 C 1.53676 * 107.97199 * 0.71143 * 27 18 17 29 29 H 1.08997 * 112.77470 * 139.88633 * 28 27 18 30 30 C 1.46758 * 125.33448 * 359.70262 * 13 11 9 31 31 H 1.08996 * 109.46956 * 60.00828 * 1 2 3 32 32 H 1.08998 * 109.47687 * 300.00108 * 1 2 3 33 33 H 1.09004 * 109.47065 * 180.02562 * 1 2 3 34 34 H 1.08991 * 109.47242 * 239.99406 * 2 1 3 35 35 H 1.08990 * 109.47571 * 53.82539 * 3 2 1 36 36 H 1.08997 * 109.46822 * 173.82929 * 3 2 1 37 37 H 1.08999 * 109.46683 * 293.82459 * 3 2 1 38 38 H 1.09001 * 109.46325 * 305.85823 * 5 4 2 39 39 H 1.08999 * 109.46402 * 65.82636 * 5 4 2 40 40 H 1.09007 * 109.50089 * 60.76200 * 6 5 4 41 41 H 1.09002 * 109.50600 * 180.87918 * 6 5 4 42 42 H 1.08998 * 109.52670 * 177.56010 * 7 6 5 43 43 H 1.09000 * 109.51601 * 297.68492 * 7 6 5 44 44 H 1.09001 * 109.49812 * 62.28956 * 8 7 6 45 45 H 1.08993 * 109.50028 * 182.36767 * 8 7 6 46 46 H 1.08995 * 109.77223 * 300.34698 * 14 13 11 47 47 H 1.09001 * 109.76405 * 61.09115 * 14 13 11 48 48 H 1.08993 * 110.01546 * 258.13982 * 17 15 14 49 49 H 1.09003 * 110.01485 * 19.53153 * 17 15 14 50 50 H 0.97005 * 120.00258 * 179.97438 * 22 21 19 51 51 H 1.09001 * 109.76728 * 120.34182 * 27 18 17 52 52 H 1.09005 * 109.76908 * 241.08105 * 27 18 17 53 53 H 1.08996 * 110.01384 * 280.84470 * 30 13 11 54 54 H 1.09000 * 110.01895 * 42.23860 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 1.4212 -0.1261 2.4151 6 6 2.0603 -0.7701 3.6476 7 6 1.8338 -2.2838 3.6020 8 6 2.4236 -2.8414 2.3037 9 6 1.7740 -2.1374 1.1102 10 1 0.7002 -2.3244 1.1188 11 6 2.3659 -2.6692 -0.1696 12 8 3.3369 -2.1312 -0.6581 13 7 1.8163 -3.7427 -0.7712 14 6 2.2945 -4.3553 -2.0150 15 6 1.3697 -5.5367 -2.3477 16 1 1.1571 -5.6190 -3.4135 17 6 1.9620 -6.8290 -1.7559 18 7 0.8388 -7.5883 -1.1941 19 6 0.8562 -8.9250 -0.8971 20 1 1.7489 -9.5062 -1.0755 21 6 -0.2734 -9.5330 -0.3669 22 7 -1.3614 -8.8248 -0.1501 23 14 -0.2499 -11.3565 0.0376 24 1 0.2059 -11.5470 1.4380 25 1 -1.6166 -11.9159 -0.1187 26 1 0.6799 -12.0563 -0.8850 27 6 -0.3049 -6.6911 -0.9998 28 6 0.1051 -5.2896 -1.4787 29 1 -0.6910 -4.7792 -2.0207 30 6 0.6491 -4.4853 -0.2813 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8898 35 1 1.5892 1.9873 0.8294 36 1 3.1243 1.4445 0.1105 37 1 1.7696 1.9234 -0.9401 38 1 1.5931 0.9500 2.4373 39 1 0.3491 -0.3226 2.4176 40 1 3.1304 -0.5623 3.6531 41 1 1.6049 -0.3609 4.5494 42 1 2.3246 -2.7515 4.4555 43 1 0.7646 -2.4932 3.6369 44 1 3.4993 -2.6662 2.2881 45 1 2.2284 -3.9121 2.2458 46 1 2.2628 -3.6236 -2.8222 47 1 3.3155 -4.7127 -1.8810 48 1 2.4497 -7.4088 -2.5394 49 1 2.6779 -6.5858 -0.9706 50 1 -2.1510 -9.2497 0.2201 51 1 -1.1549 -7.0458 -1.5827 52 1 -0.5710 -6.6565 0.0567 53 1 0.9464 -5.1606 0.5210 54 1 -0.1112 -3.7913 0.0770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049097543.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:15 Heat of formation + Delta-G solvation = -20.775194 kcal Electronic energy + Delta-G solvation = -31569.497844 eV Core-core repulsion = 27733.809419 eV Total energy + Delta-G solvation = -3835.688425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.97479 -40.61890 -38.92460 -36.64477 -36.09083 -34.13869 -32.59022 -31.62961 -31.28581 -31.09672 -28.12791 -27.45961 -27.12056 -25.74672 -25.04592 -23.84548 -21.97505 -21.58746 -21.01935 -20.77074 -19.73717 -18.91607 -18.22413 -17.37611 -17.16234 -16.69948 -16.34440 -15.97102 -15.80493 -15.50931 -15.33912 -15.07492 -14.84611 -14.60485 -14.54883 -14.24026 -14.14782 -13.82176 -13.58738 -13.51194 -13.44285 -13.31925 -13.14862 -12.93751 -12.71275 -12.69530 -12.63861 -12.40397 -12.10181 -12.06593 -11.94767 -11.87085 -11.74121 -11.65016 -11.60582 -11.53193 -11.44892 -11.21349 -10.73384 -10.60282 -9.69210 -9.22180 -8.87832 -7.84885 -5.19592 1.47649 1.48171 1.51686 1.56908 1.86052 2.49981 2.85228 3.24688 3.33176 3.46385 3.62724 3.77150 3.82256 3.88320 3.90606 3.97393 4.03072 4.15716 4.19411 4.25673 4.27090 4.27978 4.37499 4.44675 4.55147 4.56701 4.67819 4.69382 4.73110 4.75064 4.79851 4.80757 4.87804 4.90713 4.97657 4.99031 5.02176 5.08807 5.12195 5.13528 5.19697 5.22301 5.27819 5.32881 5.37998 5.46042 5.48445 5.63061 5.78506 6.01220 6.18823 6.21870 6.46057 7.10662 7.13145 7.79599 8.41227 9.24877 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.003138 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.349562 B = 8919.478565 C = 9609.706221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 C -0.131 4.131 4 N -0.523 5.523 5 C 0.051 3.949 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.105 4.105 9 C 0.081 3.919 10 H 0.068 0.932 11 C 0.531 3.469 12 O -0.562 6.562 13 N -0.611 5.611 14 C 0.124 3.876 15 C -0.094 4.094 16 H 0.118 0.882 17 C 0.140 3.860 18 N -0.623 5.623 19 C -0.244 4.244 20 H 0.078 0.922 21 C -0.059 4.059 22 N -0.946 5.946 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.272 1.272 27 C 0.199 3.801 28 C -0.109 4.109 29 H 0.114 0.886 30 C 0.121 3.879 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.039 0.961 49 H 0.011 0.989 50 H 0.248 0.752 51 H 0.016 0.984 52 H 0.019 0.981 53 H 0.054 0.946 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 20.070 3.776 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.041 4.041 3 C -0.188 4.188 4 N -0.248 5.248 5 C -0.076 4.076 6 C -0.152 4.152 7 C -0.152 4.152 8 C -0.144 4.144 9 C -0.030 4.030 10 H 0.085 0.915 11 C 0.320 3.680 12 O -0.440 6.440 13 N -0.344 5.344 14 C 0.001 3.999 15 C -0.114 4.114 16 H 0.136 0.864 17 C 0.015 3.985 18 N -0.349 5.349 19 C -0.373 4.373 20 H 0.096 0.904 21 C -0.252 4.252 22 N -0.594 5.594 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.197 1.197 27 C 0.074 3.926 28 C -0.129 4.129 29 H 0.133 0.867 30 C -0.002 4.002 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.057 0.943 49 H 0.029 0.971 50 H 0.057 0.943 51 H 0.034 0.966 52 H 0.037 0.963 53 H 0.072 0.928 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.189 20.340 3.659 20.911 hybrid contribution -0.879 -1.741 0.036 1.951 sum 2.310 18.599 3.695 19.103 Atomic orbital electron populations 1.22442 0.96337 1.01641 1.03498 1.21805 0.93332 0.96417 0.92583 1.21715 1.01185 0.93572 1.02362 1.61944 1.59492 1.00117 1.03249 1.22287 0.96730 1.00075 0.88471 1.21621 1.01623 0.94495 0.97479 1.21563 1.01213 0.96495 0.95976 1.21496 1.00504 0.98747 0.93620 1.21509 0.98774 0.90490 0.92268 0.91468 1.20551 0.83189 0.78576 0.85684 1.90657 1.27749 1.59144 1.66484 1.48436 1.31222 1.29288 1.25473 1.21677 0.97505 0.94276 0.86418 1.22802 0.94511 0.93144 1.00928 0.86437 1.21445 0.90379 0.91657 0.95016 1.44512 1.10555 1.05450 1.74377 1.19389 0.98177 0.84457 1.35320 0.90420 1.25547 0.95820 1.02142 1.01727 1.70140 1.02962 1.35500 1.50837 0.85142 0.76574 0.80071 0.77913 1.21437 1.21932 1.19705 1.20699 0.89055 0.85446 0.97444 1.23077 0.97814 0.96506 0.95456 0.86745 1.22086 0.87007 0.94368 0.96704 0.91202 0.90762 0.93771 0.92192 0.91245 0.93090 0.91549 0.88936 0.93716 0.91790 0.89157 0.90398 0.91333 0.91991 0.91927 0.90432 0.92105 0.94269 0.97095 0.94290 0.96595 0.96299 0.92773 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.43 71.98 0.61 -2.61 16 2 C 0.07 1.47 2.55 44.92 0.11 1.58 16 3 C -0.13 -2.36 8.99 71.98 0.65 -1.71 16 4 N -0.52 -11.98 4.20 -850.40 -3.57 -15.55 16 5 C 0.05 0.86 4.52 86.33 0.39 1.25 16 6 C -0.11 -1.79 6.09 30.65 0.19 -1.60 16 7 C -0.11 -2.07 6.00 30.67 0.18 -1.89 16 8 C -0.11 -2.54 5.36 30.65 0.16 -2.38 16 9 C 0.08 2.05 1.49 44.19 0.07 2.11 16 10 H 0.07 1.60 5.38 -2.39 -0.01 1.58 16 11 C 0.53 16.55 5.77 87.66 0.51 17.05 16 12 O -0.56 -21.01 15.63 -3.05 -0.05 -21.05 16 13 N -0.61 -18.50 3.31 -817.17 -2.71 -21.20 16 14 C 0.12 3.67 6.19 86.58 0.54 4.20 16 15 C -0.09 -2.97 4.10 -9.40 -0.04 -3.01 16 16 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 17 C 0.14 5.60 6.42 86.66 0.56 6.16 16 18 N -0.62 -30.84 3.38 -697.71 -2.36 -33.20 16 19 C -0.24 -13.43 10.25 84.03 0.86 -12.57 16 20 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 21 C -0.06 -3.26 5.48 84.86 0.47 -2.79 16 22 N -0.95 -54.54 10.25 21.65 0.22 -54.32 16 23 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 C 0.20 9.09 4.73 86.58 0.41 9.50 16 28 C -0.11 -3.59 4.12 -9.34 -0.04 -3.63 16 29 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 30 C 0.12 3.66 5.75 86.72 0.50 4.16 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.11 6.45 -2.39 -0.02 1.09 16 33 H 0.04 0.87 6.85 -2.38 -0.02 0.85 16 34 H 0.06 1.71 5.74 -2.39 -0.01 1.70 16 35 H 0.07 0.99 6.75 -2.39 -0.02 0.97 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.33 6.38 -2.39 -0.02 1.31 16 39 H 0.04 0.70 6.57 -2.39 -0.02 0.69 16 40 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.06 1.90 7.63 -2.39 -0.02 1.88 16 48 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 50 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 51 H 0.02 0.82 7.36 -2.39 -0.02 0.81 16 52 H 0.02 0.97 6.93 -2.38 -0.02 0.95 16 53 H 0.05 1.91 7.58 -2.39 -0.02 1.89 16 54 H 0.09 2.26 6.92 -2.39 -0.02 2.25 16 Total: -1.00 -66.89 393.97 0.55 -66.34 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.86 Total: 18.25 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 6.12 Total: 13.84 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -8.41 Total: -124.26 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.05 Total: -21.05 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.89 0.55 -66.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049097543.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.568 kcal (2) G-P(sol) polarization free energy of solvation -66.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds