Wall clock time and date at job start Tue Mar 31 2020 19:12:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53001 * 109.46798 * 2 1
4 4 N 1.46903 * 109.46895 * 119.99641 * 2 1 3
5 5 C 1.46851 * 110.99690 * 175.00241 * 4 2 1
6 6 C 1.53035 * 109.52404 * 185.83873 * 5 4 2
7 7 C 1.53118 * 109.27791 * 300.82561 * 6 5 4
8 8 C 1.50705 * 109.52148 * 177.55653 * 7 6 5
9 9 O 1.21274 * 119.99993 * 0.02562 * 8 7 6
10 10 N 1.34784 * 119.99887 * 179.97438 * 8 7 6
11 11 C 1.46641 * 125.32784 * 179.97438 * 10 8 7
12 12 C 1.53686 * 108.00986 * 179.18490 * 11 10 8
13 13 H 1.09004 * 112.55893 * 105.90407 * 12 11 10
14 14 C 1.53716 * 109.34296 * 232.44671 * 12 11 10
15 15 N 1.46672 * 107.94668 * 93.74778 * 14 12 11
16 16 C 1.36939 * 125.33748 * 179.45867 * 15 14 12
17 17 H 1.07997 * 119.99912 * 359.97438 * 16 15 14
18 18 C 1.38807 * 119.99519 * 180.02562 * 16 15 14
19 19 N 1.31625 * 120.00498 * 359.97438 * 18 16 15
20 20 Si 1.86802 * 119.99879 * 179.97438 * 18 16 15
21 21 H 1.48504 * 109.47400 * 59.99203 * 20 18 16
22 22 H 1.48503 * 109.47338 * 179.97438 * 20 18 16
23 23 H 1.48501 * 109.46941 * 299.99340 * 20 18 16
24 24 C 1.46769 * 109.32056 * 359.45209 * 15 14 12
25 25 C 1.53971 * 106.62930 * 18.52167 * 24 15 14
26 26 H 1.09002 * 113.01755 * 94.27635 * 25 24 15
27 27 C 1.47612 * 125.44125 * 0.82263 * 10 8 7
28 28 C 1.53120 * 109.16360 * 57.65336 * 7 6 5
29 29 C 1.46843 * 111.00322 * 299.21195 * 4 2 1
30 30 H 1.09000 * 109.47686 * 299.99703 * 1 2 3
31 31 H 1.08994 * 109.47221 * 60.00270 * 1 2 3
32 32 H 1.09004 * 109.46524 * 180.02562 * 1 2 3
33 33 H 1.08998 * 109.47639 * 239.99751 * 2 1 3
34 34 H 1.09003 * 109.47464 * 59.99924 * 3 2 1
35 35 H 1.08997 * 109.47069 * 179.97438 * 3 2 1
36 36 H 1.09003 * 109.47297 * 299.99743 * 3 2 1
37 37 H 1.09006 * 109.46312 * 65.82739 * 5 4 2
38 38 H 1.08995 * 109.46555 * 305.85951 * 5 4 2
39 39 H 1.08995 * 109.50500 * 180.88263 * 6 5 4
40 40 H 1.08997 * 109.50114 * 60.76457 * 6 5 4
41 41 H 1.08999 * 109.52200 * 297.68111 * 7 6 5
42 42 H 1.09002 * 109.76021 * 59.54619 * 11 10 8
43 43 H 1.08996 * 109.75993 * 298.83245 * 11 10 8
44 44 H 1.09005 * 109.77353 * 213.37013 * 14 12 11
45 45 H 1.09002 * 109.77097 * 334.12569 * 14 12 11
46 46 H 0.96997 * 120.00291 * 179.97438 * 19 18 16
47 47 H 1.08994 * 110.03381 * 259.22731 * 24 15 14
48 48 H 1.09003 * 110.02702 * 137.80544 * 24 15 14
49 49 H 1.09000 * 111.08876 * 79.04935 * 27 10 8
50 50 H 1.08999 * 109.35715 * 317.41319 * 27 10 8
51 51 H 1.08996 * 109.50297 * 62.28392 * 28 7 6
52 52 H 1.09001 * 109.50301 * 182.40637 * 28 7 6
53 53 H 1.08998 * 109.46396 * 294.18279 * 29 4 2
54 54 H 1.09001 * 109.46181 * 54.14574 * 29 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 2.0196 -0.6924 1.1995
5 6 3.4827 -0.8163 1.1752
6 6 3.9438 -1.6662 2.3614
7 6 3.4905 -1.0029 3.6650
8 6 3.8895 -1.8659 4.8343
9 8 4.4788 -2.9088 4.6451
10 7 3.5922 -1.4781 6.0905
11 6 3.9227 -2.2241 7.3089
12 6 3.4194 -1.4135 8.5136
13 1 2.5251 -1.8447 8.9636
14 6 4.5684 -1.2268 9.5175
15 7 5.2185 0.0555 9.2270
16 6 6.2802 0.5792 9.9153
17 1 6.7047 0.0370 10.7473
18 6 6.8102 1.8072 9.5441
19 7 6.2925 2.4682 8.5304
20 14 8.2581 2.5219 10.4834
21 1 9.4125 1.5918 10.3962
22 1 8.6329 3.8321 9.8932
23 1 7.8803 2.7099 11.9072
24 6 4.5525 0.6893 8.0829
25 6 3.1771 0.0116 7.9427
26 1 2.3816 0.5515 8.4564
27 6 2.8676 -0.2453 6.4568
28 6 1.9680 -0.8418 3.6440
29 6 1.5642 -0.0158 2.4206
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3632 -1.0277 0.0005
33 1 1.8934 -0.5138 -0.8899
34 1 1.6766 1.9564 0.8900
35 1 3.1299 1.4426 0.0005
36 1 1.6766 1.9564 -0.8900
37 1 3.9322 0.1745 1.2419
38 1 3.7914 -1.2932 0.2450
39 1 5.0308 -1.7449 2.3520
40 1 3.5056 -2.6615 2.2881
41 1 3.9602 -0.0237 3.7579
42 1 5.0025 -2.3561 7.3787
43 1 3.4330 -3.1977 7.2891
44 1 4.1729 -1.2179 10.5332
45 1 5.2883 -2.0381 9.4090
46 1 6.6626 3.3265 8.2713
47 1 5.1388 0.5348 7.1771
48 1 4.4258 1.7559 8.2687
49 1 1.7935 -0.3648 6.3146
50 1 3.2345 0.5830 5.8508
51 1 1.4988 -1.8241 3.5908
52 1 1.6435 -0.3314 4.5508
53 1 2.0227 0.9713 2.4813
54 1 0.4796 0.0888 2.3949
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049146560.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:12:31
Heat of formation + Delta-G solvation = -24.365285 kcal
Electronic energy + Delta-G solvation = -30924.124271 eV
Core-core repulsion = 27088.280168 eV
Total energy + Delta-G solvation = -3835.844103 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.80035 -40.46564 -39.37116 -36.61836 -35.96116 -34.14594 -32.21827 -31.65349
-31.48232 -30.92319 -28.06297 -27.59664 -27.19398 -25.92398 -24.33412 -24.03122
-21.97287 -21.77908 -20.84053 -20.48292 -20.03693 -18.88445 -18.11964 -17.27176
-17.20741 -16.66257 -16.40044 -16.11264 -15.77847 -15.52345 -15.27077 -15.07898
-14.84007 -14.82050 -14.45369 -14.17409 -14.03633 -13.63634 -13.62275 -13.46488
-13.24290 -13.16749 -13.08391 -12.86397 -12.80809 -12.73276 -12.66835 -12.33482
-12.19414 -12.05695 -11.93235 -11.86068 -11.79638 -11.66336 -11.60976 -11.52292
-11.30724 -11.16489 -10.78863 -10.65902 -9.63327 -9.16838 -8.88189 -7.81391
-5.22088 1.44333 1.47143 1.53228 1.58301 1.99964 2.48002 2.95195
3.28139 3.33889 3.47538 3.62134 3.74114 3.81272 3.85817 3.96706
4.01783 4.16261 4.22928 4.26045 4.29468 4.32630 4.38854 4.43185
4.51700 4.53558 4.62823 4.66058 4.73733 4.75889 4.79073 4.80975
4.83789 4.90137 4.92586 4.93547 4.95526 5.04854 5.07248 5.09511
5.18155 5.19187 5.25683 5.32114 5.38847 5.42867 5.46161 5.46356
5.66065 5.81636 6.19287 6.25176 6.28032 6.51702 7.10929 7.12190
7.79808 8.40480 9.22183
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.015524 B = 0.002855 C = 0.002657
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1803.276653 B = 9803.496726 C =10533.772672
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.075 3.925
3 C -0.185 4.185
4 N -0.540 5.540
5 C 0.062 3.938
6 C -0.090 4.090
7 C -0.096 4.096
8 C 0.526 3.474
9 O -0.590 6.590
10 N -0.610 5.610
11 C 0.121 3.879
12 C -0.091 4.091
13 H 0.135 0.865
14 C 0.137 3.863
15 N -0.625 5.625
16 C -0.243 4.243
17 H 0.078 0.922
18 C -0.064 4.064
19 N -0.945 5.945
20 Si 0.977 3.023
21 H -0.284 1.284
22 H -0.292 1.292
23 H -0.274 1.274
24 C 0.181 3.819
25 C -0.113 4.113
26 H 0.121 0.879
27 C 0.117 3.883
28 C -0.104 4.104
29 C 0.055 3.945
30 H 0.059 0.941
31 H 0.070 0.930
32 H 0.058 0.942
33 H 0.083 0.917
34 H 0.057 0.943
35 H 0.049 0.951
36 H 0.070 0.930
37 H 0.038 0.962
38 H 0.084 0.916
39 H 0.056 0.944
40 H 0.064 0.936
41 H 0.093 0.907
42 H 0.030 0.970
43 H 0.076 0.924
44 H 0.037 0.963
45 H 0.015 0.985
46 H 0.246 0.754
47 H -0.023 1.023
48 H 0.060 0.940
49 H 0.112 0.888
50 H 0.074 0.926
51 H 0.068 0.932
52 H 0.092 0.908
53 H 0.041 0.959
54 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.317 -3.180 -15.110 22.465
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.033 4.033
3 C -0.244 4.244
4 N -0.265 5.265
5 C -0.065 4.065
6 C -0.128 4.128
7 C -0.118 4.118
8 C 0.316 3.684
9 O -0.471 6.471
10 N -0.342 5.342
11 C -0.002 4.002
12 C -0.110 4.110
13 H 0.153 0.847
14 C 0.011 3.989
15 N -0.351 5.351
16 C -0.372 4.372
17 H 0.096 0.904
18 C -0.256 4.256
19 N -0.594 5.594
20 Si 0.805 3.195
21 H -0.211 1.211
22 H -0.218 1.218
23 H -0.200 1.200
24 C 0.055 3.945
25 C -0.133 4.133
26 H 0.139 0.861
27 C -0.005 4.005
28 C -0.142 4.142
29 C -0.073 4.073
30 H 0.078 0.922
31 H 0.088 0.912
32 H 0.077 0.923
33 H 0.101 0.899
34 H 0.076 0.924
35 H 0.068 0.932
36 H 0.089 0.911
37 H 0.056 0.944
38 H 0.103 0.897
39 H 0.075 0.925
40 H 0.082 0.918
41 H 0.111 0.889
42 H 0.049 0.951
43 H 0.094 0.906
44 H 0.055 0.945
45 H 0.033 0.967
46 H 0.056 0.944
47 H -0.005 1.005
48 H 0.078 0.922
49 H 0.130 0.870
50 H 0.092 0.908
51 H 0.087 0.913
52 H 0.111 0.889
53 H 0.059 0.941
54 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -16.052 -4.053 -15.276 22.526
hybrid contribution 2.104 1.142 0.636 2.477
sum -13.948 -2.911 -14.640 20.429
Atomic orbital electron populations
1.21849 0.93347 1.02320 1.02383 1.21758 0.96493 0.92411 0.92663
1.22462 1.01105 0.97972 1.02857 1.62204 1.10188 1.51576 1.02534
1.22020 0.87945 0.98379 0.98201 1.21315 1.00070 0.99359 0.92086
1.21336 0.99710 0.98677 0.92031 1.20924 0.77838 0.86068 0.83556
1.90639 1.43898 1.27135 1.85462 1.48534 1.56572 1.23909 1.05176
1.21762 0.98782 0.95646 0.83992 1.22757 0.98712 0.95454 0.94070
0.84710 1.21340 0.92942 0.87583 0.96989 1.44569 1.35948 1.19211
1.35395 1.19382 1.06479 1.01350 1.10032 0.90442 1.25584 1.02454
0.98063 0.99548 1.70096 1.43870 1.15413 1.30060 0.85180 0.79026
0.77077 0.78203 1.21086 1.21805 1.19951 1.21179 0.88458 0.97410
0.87406 1.23220 0.98983 0.95844 0.95244 0.86069 1.22343 0.97605
0.85690 0.94843 1.21703 0.91111 1.01898 0.99507 1.22162 1.01603
0.95039 0.88485 0.92215 0.91154 0.92335 0.89907 0.92409 0.93237
0.91078 0.94377 0.89732 0.92482 0.91759 0.88891 0.95136 0.90563
0.94536 0.96717 0.94403 1.00467 0.92224 0.87000 0.90813 0.91319
0.88931 0.94128 0.88457
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.60 8.99 71.98 0.65 -0.95 16
2 C 0.07 1.03 2.96 44.92 0.13 1.16 16
3 C -0.19 -2.43 8.50 71.98 0.61 -1.82 16
4 N -0.54 -9.39 4.64 -871.12 -4.04 -13.43 16
5 C 0.06 1.21 5.02 86.32 0.43 1.64 16
6 C -0.09 -2.24 4.68 30.65 0.14 -2.10 16
7 C -0.10 -2.46 1.98 -11.46 -0.02 -2.48 16
8 C 0.53 17.72 7.21 87.66 0.63 18.35 16
9 O -0.59 -24.52 16.28 -3.01 -0.05 -24.57 16
10 N -0.61 -19.45 3.32 -815.44 -2.71 -22.15 16
11 C 0.12 4.06 6.21 86.58 0.54 4.60 16
12 C -0.09 -2.79 4.01 -9.49 -0.04 -2.83 16
13 H 0.14 3.04 8.14 -2.38 -0.02 3.02 16
14 C 0.14 5.50 6.62 86.59 0.57 6.07 16
15 N -0.63 -31.93 3.38 -697.60 -2.36 -34.29 16
16 C -0.24 -13.74 10.25 84.03 0.86 -12.88 16
17 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16
18 C -0.06 -3.61 5.48 84.86 0.47 -3.15 16
19 N -0.95 -55.79 10.16 21.65 0.22 -55.57 16
20 Si 0.98 45.95 29.55 68.60 2.03 47.97 16
21 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16
22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16
23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16
24 C 0.18 8.50 4.94 86.66 0.43 8.93 16
25 C -0.11 -3.61 4.12 -9.32 -0.04 -3.65 16
26 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16
27 C 0.12 3.07 4.45 86.48 0.38 3.45 16
28 C -0.10 -2.00 5.16 30.65 0.16 -1.84 16
29 C 0.05 0.88 4.63 86.33 0.40 1.28 16
30 H 0.06 0.65 6.30 -2.39 -0.02 0.63 16
31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16
32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
33 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16
34 H 0.06 0.79 6.52 -2.39 -0.02 0.77 16
35 H 0.05 0.73 6.65 -2.39 -0.02 0.71 16
36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16
37 H 0.04 0.74 6.73 -2.38 -0.02 0.72 16
38 H 0.08 1.48 8.08 -2.39 -0.02 1.46 16
39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16
40 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16
41 H 0.09 2.41 7.88 -2.39 -0.02 2.39 16
42 H 0.03 1.26 7.29 -2.39 -0.02 1.24 16
43 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16
44 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16
45 H 0.01 0.62 7.44 -2.39 -0.02 0.61 16
46 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16
47 H -0.02 -1.22 7.75 -2.39 -0.02 -1.24 16
48 H 0.06 3.19 6.19 -2.39 -0.01 3.18 16
49 H 0.11 2.01 6.76 -2.39 -0.02 1.99 16
50 H 0.07 2.00 7.43 -2.39 -0.02 1.98 16
51 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
52 H 0.09 1.51 4.97 -2.39 -0.01 1.50 16
53 H 0.04 0.67 6.62 -2.39 -0.02 0.65 16
54 H 0.10 1.30 6.03 -2.39 -0.01 1.28 16
Total: -1.00 -72.27 392.06 0.27 -72.00
By element:
Atomic # 1 Polarization: 15.38 SS G_CDS: 0.87 Total: 16.25 kcal
Atomic # 6 Polarization: 7.48 SS G_CDS: 6.31 Total: 13.79 kcal
Atomic # 7 Polarization: -116.55 SS G_CDS: -8.89 Total: -125.44 kcal
Atomic # 8 Polarization: -24.52 SS G_CDS: -0.05 Total: -24.57 kcal
Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal
Total: -72.27 0.27 -72.00 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049146560.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.639 kcal
(2) G-P(sol) polarization free energy of solvation -72.273 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.635 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.004 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.365 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds