Wall clock time and date at job start Tue Mar 31 2020 18:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47317 * 2 1 4 4 C 1.53006 * 109.46720 * 120.00285 * 2 1 3 5 5 H 1.08999 * 109.46840 * 300.26170 * 4 2 1 6 6 C 1.50693 * 109.46910 * 180.26481 * 4 2 1 7 7 O 1.21288 * 120.00087 * 283.95244 * 6 4 2 8 8 N 1.34781 * 120.00284 * 103.95811 * 6 4 2 9 9 C 1.46665 * 125.34109 * 185.33642 * 8 6 4 10 10 C 1.53720 * 107.94596 * 180.54396 * 9 8 6 11 11 H 1.08995 * 112.56564 * 139.71567 * 10 9 8 12 12 C 1.53696 * 109.33724 * 266.25273 * 10 9 8 13 13 N 1.47180 * 107.73255 * 128.69523 * 12 10 9 14 14 C 1.36932 * 125.25205 * 180.39732 * 13 12 10 15 15 H 1.07998 * 119.99841 * 179.13659 * 14 13 12 16 16 C 1.38815 * 120.00363 * 359.13184 * 14 13 12 17 17 N 1.31620 * 119.99521 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00141 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47029 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47199 * 120.00212 * 18 16 14 21 21 H 1.48503 * 109.46969 * 240.00525 * 18 16 14 22 22 C 1.46740 * 109.41064 * 359.64774 * 13 12 10 23 23 C 1.53937 * 106.72422 * 342.41073 * 22 13 12 24 24 H 1.08994 * 113.01180 * 150.83269 * 23 22 13 25 25 C 1.46777 * 125.33374 * 5.02662 * 8 6 4 26 26 N 1.46897 * 109.47031 * 60.26225 * 4 2 1 27 27 C 1.48563 * 110.99557 * 161.74173 * 26 4 2 28 28 C 1.54386 * 104.69750 * 200.90024 * 27 26 4 29 29 C 1.54569 * 104.90988 * 23.87898 * 28 27 26 30 30 C 1.48559 * 111.00312 * 46.32437 * 26 4 2 31 31 H 1.09000 * 109.47539 * 300.00136 * 1 2 3 32 32 H 1.09007 * 109.47090 * 59.99533 * 1 2 3 33 33 H 1.08996 * 109.47781 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47019 * 239.99842 * 2 1 3 35 35 H 1.09005 * 109.47104 * 176.30628 * 3 2 1 36 36 H 1.09001 * 109.47352 * 296.31108 * 3 2 1 37 37 H 1.09000 * 109.47239 * 56.31671 * 3 2 1 38 38 H 1.09002 * 109.77319 * 300.16545 * 9 8 6 39 39 H 1.09002 * 109.77443 * 60.92121 * 9 8 6 40 40 H 1.09008 * 109.75985 * 247.19152 * 12 10 9 41 41 H 1.08993 * 109.76636 * 7.91120 * 12 10 9 42 42 H 0.97000 * 119.99620 * 179.97438 * 17 16 14 43 43 H 1.09001 * 110.01203 * 223.09503 * 22 13 12 44 44 H 1.09003 * 110.01192 * 101.72205 * 22 13 12 45 45 H 1.08998 * 110.02755 * 280.77591 * 25 8 6 46 46 H 1.08997 * 110.02803 * 42.19143 * 25 8 6 47 47 H 1.08995 * 110.41168 * 319.73437 * 27 26 4 48 48 H 1.08998 * 110.41477 * 82.06454 * 27 26 4 49 49 H 1.08993 * 110.32436 * 142.80450 * 28 27 26 50 50 H 1.09000 * 110.32425 * 265.01345 * 28 27 26 51 51 H 1.08999 * 110.29875 * 241.08297 * 29 28 27 52 52 H 1.08998 * 110.31703 * 118.89592 * 29 28 27 53 53 H 1.09000 * 110.40700 * 277.81738 * 30 26 4 54 54 H 1.08994 * 110.41184 * 40.13640 * 30 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2493 5 1 1.6727 -0.2102 2.1392 6 6 3.5468 -0.7157 1.2526 7 8 4.1577 -1.4684 0.5237 8 7 4.2158 0.1257 2.0656 9 6 5.6709 0.3085 2.0855 10 6 6.0030 1.3474 3.1688 11 1 6.8941 1.0864 3.7395 12 6 6.0855 2.7420 2.5281 13 7 5.2257 3.6458 3.3092 14 6 5.0299 4.9750 3.0449 15 1 4.3672 5.5575 3.6677 16 6 5.6832 5.5739 1.9765 17 7 6.4905 4.8639 1.2173 18 14 5.4155 7.3871 1.6156 19 1 4.4683 7.9548 2.6084 20 1 6.7121 8.1057 1.7021 21 1 4.8536 7.5422 0.2498 22 6 4.5976 2.8966 4.4035 23 6 4.7222 1.4042 4.0473 24 1 4.7733 0.7596 4.9247 25 6 3.6018 1.0076 3.0655 26 7 1.5554 -2.1081 1.2460 27 6 2.3547 -2.9535 2.1699 28 6 2.1203 -4.3987 1.6802 29 6 1.7224 -4.2553 0.1935 30 6 1.7507 -2.7372 -0.0855 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1280 1.4431 0.0662 36 1 1.7317 1.9368 -0.9212 37 1 1.6238 1.9750 0.8551 38 1 6.1582 -0.6378 2.3205 39 1 6.0109 0.6672 1.1140 40 1 7.1121 3.1065 2.5696 41 1 5.7541 2.6915 1.4910 42 1 6.9468 5.2823 0.4705 43 1 3.5467 3.1729 4.4896 44 1 5.1154 3.1008 5.3407 45 1 3.1948 1.8950 2.5809 46 1 2.8120 0.4765 3.5968 47 1 3.4117 -2.6960 2.1022 48 1 2.0007 -2.8370 3.1941 49 1 3.0352 -4.9834 1.7743 50 1 1.3129 -4.8638 2.2459 51 1 0.7202 -4.6516 0.0303 52 1 2.4423 -4.7706 -0.4423 53 1 0.9405 -2.4594 -0.7597 54 1 2.7122 -2.4442 -0.5071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049234204.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:39 Heat of formation + Delta-G solvation = -15.996033 kcal Electronic energy + Delta-G solvation = -32060.573330 eV Core-core repulsion = 28225.092145 eV Total energy + Delta-G solvation = -3835.481185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.19711 -40.60875 -38.58652 -36.73921 -36.47123 -34.10151 -32.41493 -31.85278 -31.10104 -29.82107 -28.36189 -27.64920 -27.06869 -26.63500 -24.49726 -22.70868 -22.27458 -21.80810 -21.06956 -20.75786 -19.72818 -18.89599 -18.46540 -17.67879 -17.35830 -16.71934 -16.47412 -16.37731 -15.93199 -15.53164 -15.34952 -14.84056 -14.71177 -14.51350 -14.36719 -13.97539 -13.90157 -13.67117 -13.54543 -13.36124 -13.29519 -13.24203 -13.06426 -12.90800 -12.76171 -12.67414 -12.53827 -12.25492 -12.20446 -12.04092 -11.94316 -11.89395 -11.88134 -11.84820 -11.64537 -11.45208 -11.40861 -11.33987 -11.11346 -10.70721 -9.70797 -9.36080 -8.86114 -7.84161 -5.18539 1.44205 1.45736 1.46086 1.56188 1.96647 2.49867 2.90386 3.24597 3.34717 3.50436 3.54149 3.64798 3.74804 3.84446 3.90057 3.94304 3.98842 4.13023 4.20395 4.23408 4.29497 4.41954 4.44601 4.49261 4.53018 4.53987 4.67328 4.69983 4.72794 4.76033 4.81132 4.86515 4.90093 4.93762 4.98436 5.03274 5.05184 5.08446 5.09461 5.13425 5.19119 5.22380 5.28756 5.32368 5.39029 5.46203 5.50060 5.62679 5.77455 5.77966 5.83583 6.21195 6.47826 7.03252 7.11594 7.81099 8.42837 9.26023 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.017104 B = 0.003536 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.632751 B = 7917.021621 C = 8652.385361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.078 4.078 3 C -0.145 4.145 4 C 0.070 3.930 5 H 0.113 0.887 6 C 0.508 3.492 7 O -0.579 6.579 8 N -0.604 5.604 9 C 0.125 3.875 10 C -0.113 4.113 11 H 0.111 0.889 12 C 0.202 3.798 13 N -0.622 5.622 14 C -0.233 4.233 15 H 0.086 0.914 16 C -0.066 4.066 17 N -0.951 5.951 18 Si 0.972 3.028 19 H -0.262 1.262 20 H -0.296 1.296 21 H -0.297 1.297 22 C 0.140 3.860 23 C -0.093 4.093 24 H 0.132 0.868 25 C 0.113 3.887 26 N -0.473 5.473 27 C 0.015 3.985 28 C -0.115 4.115 29 C -0.119 4.119 30 C 0.013 3.987 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.022 0.978 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.004 0.996 41 H 0.007 0.993 42 H 0.243 0.757 43 H 0.049 0.951 44 H 0.031 0.969 45 H 0.056 0.944 46 H 0.102 0.898 47 H 0.032 0.968 48 H 0.092 0.908 49 H 0.066 0.934 50 H 0.087 0.913 51 H 0.085 0.915 52 H 0.065 0.935 53 H 0.088 0.912 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.683 -16.592 3.618 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.098 4.098 3 C -0.203 4.203 4 C -0.043 4.043 5 H 0.131 0.869 6 C 0.297 3.703 7 O -0.460 6.460 8 N -0.336 5.336 9 C 0.002 3.998 10 C -0.132 4.132 11 H 0.129 0.871 12 C 0.077 3.923 13 N -0.349 5.349 14 C -0.362 4.362 15 H 0.104 0.896 16 C -0.259 4.259 17 N -0.601 5.601 18 Si 0.801 3.199 19 H -0.186 1.186 20 H -0.223 1.223 21 H -0.224 1.224 22 C 0.015 3.985 23 C -0.112 4.112 24 H 0.150 0.850 25 C -0.010 4.010 26 N -0.196 5.196 27 C -0.113 4.113 28 C -0.153 4.153 29 C -0.157 4.157 30 C -0.115 4.115 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.025 0.975 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.120 0.880 47 H 0.050 0.950 48 H 0.110 0.890 49 H 0.084 0.916 50 H 0.106 0.894 51 H 0.103 0.897 52 H 0.083 0.917 53 H 0.106 0.894 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.935 -16.852 3.235 21.488 hybrid contribution 1.777 1.550 -1.015 2.567 sum -11.157 -15.302 2.220 19.067 Atomic orbital electron populations 1.21701 0.91361 1.03086 1.02439 1.21113 0.98660 0.94730 0.95258 1.21842 0.99326 0.96232 1.02929 1.22222 0.86756 0.93211 1.02094 0.86939 1.21864 0.91892 0.78378 0.78178 1.90618 1.71076 1.41623 1.42711 1.48550 1.07535 1.40023 1.37507 1.21630 0.81480 0.98420 0.98275 1.22987 0.99622 0.94705 0.95910 0.87079 1.20800 0.93004 0.85954 0.92572 1.44627 1.52676 1.05983 1.31575 1.19471 1.21834 0.85022 1.09883 0.89581 1.25578 0.99816 1.02031 0.98439 1.70206 1.34003 1.35610 1.20263 0.85096 0.77093 0.80282 0.77430 1.18587 1.22333 1.22437 1.21365 0.96813 0.89535 0.90753 1.22983 0.92932 0.97140 0.98149 0.84996 1.22188 0.96518 0.93367 0.88880 1.65935 1.47658 0.99186 1.06831 1.23381 0.95842 0.94163 0.97920 1.22276 1.01960 0.94898 0.96186 1.22309 1.02427 0.94656 0.96302 1.23413 1.01346 0.94886 0.91820 0.91784 0.91920 0.90953 0.91701 0.95896 0.91577 0.91591 0.91005 0.94454 0.97820 0.97470 0.94799 0.93255 0.95077 0.92543 0.88019 0.94988 0.88986 0.91559 0.89440 0.89652 0.91664 0.89375 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.87 71.98 0.64 -1.79 16 2 C -0.08 -1.94 1.97 -10.79 -0.02 -1.96 16 3 C -0.15 -4.21 8.86 71.98 0.64 -3.57 16 4 C 0.07 1.76 1.97 44.17 0.09 1.85 16 5 H 0.11 2.58 6.27 -2.39 -0.01 2.56 16 6 C 0.51 16.21 3.79 87.65 0.33 16.54 16 7 O -0.58 -22.08 13.46 -3.05 -0.04 -22.12 16 8 N -0.60 -19.22 3.10 -817.01 -2.53 -21.75 16 9 C 0.13 4.34 6.24 86.59 0.54 4.88 16 10 C -0.11 -3.89 4.01 -9.49 -0.04 -3.93 16 11 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 12 C 0.20 9.67 4.77 86.48 0.41 10.08 16 13 N -0.62 -30.06 3.39 -696.48 -2.36 -32.42 16 14 C -0.23 -12.54 10.25 84.04 0.86 -11.68 16 15 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 16 C -0.07 -3.69 5.48 84.86 0.47 -3.23 16 17 N -0.95 -57.23 10.24 21.65 0.22 -57.01 16 18 Si 0.97 45.43 29.55 68.60 2.03 47.45 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 22 C 0.14 5.01 6.41 86.65 0.56 5.57 16 23 C -0.09 -2.65 4.14 -9.25 -0.04 -2.68 16 24 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 25 C 0.11 3.17 5.57 86.72 0.48 3.65 16 26 N -0.47 -10.81 4.89 -860.74 -4.21 -15.02 16 27 C 0.01 0.33 6.10 86.45 0.53 0.85 16 28 C -0.12 -2.10 7.02 31.60 0.22 -1.88 16 29 C -0.12 -2.22 7.01 31.60 0.22 -1.99 16 30 C 0.01 0.30 4.50 86.45 0.39 0.69 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.07 1.29 6.51 -2.39 -0.02 1.28 16 34 H 0.06 1.77 6.54 -2.39 -0.02 1.76 16 35 H 0.02 0.81 6.91 -2.38 -0.02 0.80 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.81 7.90 -2.39 -0.02 1.79 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.04 1.54 7.44 -2.39 -0.02 1.52 16 40 H 0.00 0.20 7.40 -2.38 -0.02 0.18 16 41 H 0.01 0.40 6.58 -2.39 -0.02 0.38 16 42 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 43 H 0.05 1.66 7.97 -2.39 -0.02 1.64 16 44 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 1.90 7.36 -2.39 -0.02 1.88 16 46 H 0.10 2.14 7.14 -2.39 -0.02 2.12 16 47 H 0.03 0.91 5.29 -2.39 -0.01 0.89 16 48 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 52 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 53 H 0.09 1.80 6.66 -2.39 -0.02 1.79 16 54 H 0.05 1.47 5.26 -2.39 -0.01 1.45 16 Total: -1.00 -68.87 392.00 0.25 -68.62 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.87 Total: 20.84 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 6.28 Total: 11.40 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -8.88 Total: -126.20 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.04 Total: -22.12 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -68.87 0.25 -68.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049234204.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.626 kcal (2) G-P(sol) polarization free energy of solvation -68.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds