Wall clock time and date at job start Tue Mar 31 2020 18:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47380 * 2 1 4 4 C 1.53007 * 109.47076 * 120.00590 * 2 1 3 5 5 H 1.08996 * 109.46786 * 178.28104 * 4 2 1 6 6 C 1.50704 * 109.46706 * 298.27705 * 4 2 1 7 7 O 1.21277 * 119.99479 * 86.60326 * 6 4 2 8 8 N 1.34770 * 119.99883 * 266.60257 * 6 4 2 9 9 C 1.46645 * 125.32708 * 174.71591 * 8 6 4 10 10 C 1.53693 * 108.00856 * 179.14572 * 9 8 6 11 11 H 1.08996 * 113.05706 * 106.19335 * 10 9 8 12 12 C 1.53730 * 109.34027 * 232.44726 * 10 9 8 13 13 N 1.46663 * 107.94695 * 93.74330 * 12 10 9 14 14 C 1.36928 * 125.34180 * 179.50017 * 13 12 10 15 15 H 1.08004 * 120.00178 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00523 * 180.02562 * 14 13 12 17 17 N 1.31627 * 119.99711 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00488 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47230 * 89.99613 * 18 16 14 20 20 H 1.48496 * 109.47366 * 210.00487 * 18 16 14 21 21 H 1.48508 * 109.47058 * 329.99969 * 18 16 14 22 22 C 1.46782 * 109.32220 * 359.45778 * 13 12 10 23 23 C 1.53969 * 106.62567 * 18.51469 * 22 13 12 24 24 H 1.08996 * 113.01404 * 94.28630 * 23 22 13 25 25 C 1.46744 * 125.33146 * 354.69425 * 8 6 4 26 26 N 1.46896 * 109.47012 * 58.27678 * 4 2 1 27 27 C 1.48529 * 111.00379 * 57.75310 * 26 4 2 28 28 C 1.54937 * 103.22990 * 159.71728 * 27 26 4 29 29 C 1.54593 * 102.92151 * 322.58446 * 28 27 26 30 30 C 1.47906 * 110.99514 * 175.14705 * 26 4 2 31 31 H 1.09004 * 109.46879 * 306.74676 * 1 2 3 32 32 H 1.08998 * 109.46737 * 66.74333 * 1 2 3 33 33 H 1.08997 * 109.47178 * 186.74438 * 1 2 3 34 34 H 1.09003 * 109.47111 * 239.99662 * 2 1 3 35 35 H 1.09000 * 109.46606 * 184.31664 * 3 2 1 36 36 H 1.08994 * 109.47244 * 304.31752 * 3 2 1 37 37 H 1.08998 * 109.46991 * 64.32097 * 3 2 1 38 38 H 1.08999 * 109.76137 * 59.50429 * 9 8 6 39 39 H 1.08993 * 109.76163 * 298.78614 * 9 8 6 40 40 H 1.08999 * 109.77017 * 213.36716 * 12 10 9 41 41 H 1.09003 * 109.76975 * 334.12223 * 12 10 9 42 42 H 0.97000 * 119.99513 * 179.97438 * 17 16 14 43 43 H 1.08998 * 110.02573 * 259.22429 * 22 13 12 44 44 H 1.08995 * 110.02878 * 137.81021 * 22 13 12 45 45 H 1.09006 * 110.01065 * 79.04672 * 25 8 6 46 46 H 1.08995 * 110.01078 * 317.67844 * 25 8 6 47 47 H 1.09000 * 110.66345 * 278.15547 * 27 26 4 48 48 H 1.09002 * 110.66425 * 41.28123 * 27 26 4 49 49 H 1.08999 * 110.72183 * 204.22954 * 28 27 26 50 50 H 1.08997 * 110.72034 * 80.94338 * 28 27 26 51 51 H 1.08997 * 110.31138 * 263.04623 * 29 28 27 52 52 H 1.08996 * 110.31208 * 140.87277 * 29 28 27 53 53 H 1.08996 * 109.91725 * 333.50967 * 30 26 4 54 54 H 1.08997 * 109.91719 * 94.60908 * 30 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1295 -0.7482 1.2339 6 6 1.5728 0.0132 2.4794 7 8 0.4854 -0.2335 2.9564 8 7 2.3633 0.9442 3.0492 9 6 1.9853 1.8030 4.1761 10 6 3.1881 2.6971 4.5165 11 1 3.0538 3.7317 4.2009 12 6 3.5057 2.5742 6.0156 13 7 4.5313 1.5382 6.1769 14 6 5.0817 1.1471 7.3681 15 1 4.7633 1.6131 8.2889 16 6 6.0489 0.1517 7.3923 17 7 6.4373 -0.4159 6.2700 18 14 6.7993 -0.3823 9.0175 19 1 5.9976 -1.4924 9.5918 20 1 8.1927 -0.8432 8.7916 21 1 6.8041 0.7645 9.9610 22 6 4.8744 0.9855 4.8610 23 6 4.3903 2.0061 3.8148 24 1 5.1692 2.7044 3.5084 25 6 3.7372 1.2569 2.6393 26 7 1.5166 -2.0938 1.2701 27 6 1.9127 -2.8333 0.0443 28 6 1.7582 -4.3178 0.4603 29 6 2.2372 -4.3165 1.9301 30 6 2.0813 -2.8592 2.4028 31 1 -0.3633 0.6149 0.8235 32 1 -0.3633 0.4058 -0.9442 33 1 -0.3633 -1.0205 0.1207 34 1 1.8934 -0.5139 -0.8900 35 1 3.1273 1.4433 -0.0774 36 1 1.6150 1.9782 -0.8487 37 1 1.7413 1.9334 0.9262 38 1 1.7278 1.1876 5.0382 39 1 1.1328 2.4224 3.8977 40 1 3.8806 3.5258 6.3924 41 1 2.6058 2.2901 6.5611 42 1 7.1135 -1.1112 6.2870 43 1 4.3687 0.0313 4.7136 44 1 5.9533 0.8527 4.7817 45 1 3.7269 1.8908 1.7526 46 1 4.2838 0.3365 2.4338 47 1 1.2438 -2.5938 -0.7824 48 1 2.9470 -2.6135 -0.2202 49 1 2.3935 -4.9579 -0.1518 50 1 0.7161 -4.6303 0.3945 51 1 3.2816 -4.6232 1.9880 52 1 1.6140 -4.9781 2.5318 53 1 3.0541 -2.4519 2.6779 54 1 1.4047 -2.8129 3.2561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049234206.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:45 Heat of formation + Delta-G solvation = -15.546095 kcal Electronic energy + Delta-G solvation = -31954.677162 eV Core-core repulsion = 28119.215488 eV Total energy + Delta-G solvation = -3835.461674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.97358 -40.47248 -38.94921 -36.66614 -36.43613 -34.13528 -32.27559 -31.67078 -31.42102 -29.87963 -28.23331 -27.81287 -27.18705 -26.49124 -24.44489 -22.75016 -22.15688 -21.92671 -21.18312 -20.86859 -19.55209 -18.86695 -18.26672 -17.71033 -17.37338 -16.84990 -16.59660 -16.08263 -15.89902 -15.54222 -15.14138 -14.93472 -14.86770 -14.51997 -14.33351 -14.05877 -13.95797 -13.71603 -13.48449 -13.37714 -13.28581 -13.21576 -13.09736 -13.04981 -12.84436 -12.73569 -12.65127 -12.28453 -12.18497 -12.03774 -11.96549 -11.89119 -11.82288 -11.77710 -11.62997 -11.60056 -11.47178 -11.25855 -10.78356 -10.63911 -9.60574 -9.43696 -8.90512 -7.83440 -5.24266 1.42853 1.44593 1.53113 1.58013 1.94519 2.46413 2.89711 3.26604 3.32490 3.43799 3.59316 3.67501 3.77275 3.82752 3.89116 3.92780 3.95743 4.03665 4.20753 4.24278 4.29988 4.31794 4.37544 4.48433 4.54594 4.60653 4.64752 4.68893 4.74651 4.78645 4.83021 4.85896 4.90583 4.92411 4.93643 5.00269 5.02651 5.04163 5.07927 5.13302 5.17825 5.24816 5.27360 5.39791 5.40708 5.44320 5.54176 5.62280 5.78343 5.79647 5.93792 6.25454 6.53890 7.09506 7.19033 7.77611 8.38463 9.20569 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.003931 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.910341 B = 7120.635673 C = 8551.664786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 C -0.155 4.155 4 C 0.072 3.928 5 H 0.063 0.937 6 C 0.534 3.466 7 O -0.567 6.567 8 N -0.610 5.610 9 C 0.124 3.876 10 C -0.090 4.090 11 H 0.137 0.863 12 C 0.136 3.864 13 N -0.625 5.625 14 C -0.243 4.243 15 H 0.078 0.922 16 C -0.063 4.063 17 N -0.947 5.947 18 Si 0.976 3.024 19 H -0.292 1.292 20 H -0.289 1.289 21 H -0.267 1.267 22 C 0.183 3.817 23 C -0.112 4.112 24 H 0.122 0.878 25 C 0.115 3.885 26 N -0.505 5.505 27 C 0.034 3.966 28 C -0.113 4.113 29 C -0.126 4.126 30 C 0.035 3.965 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.028 0.972 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.015 0.985 42 H 0.246 0.754 43 H -0.027 1.027 44 H 0.059 0.941 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.055 0.945 49 H 0.096 0.904 50 H 0.076 0.924 51 H 0.073 0.927 52 H 0.072 0.928 53 H 0.022 0.978 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 1.107 -19.377 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 C -0.213 4.213 4 C -0.040 4.040 5 H 0.081 0.919 6 C 0.323 3.677 7 O -0.446 6.446 8 N -0.344 5.344 9 C 0.001 3.999 10 C -0.109 4.109 11 H 0.154 0.846 12 C 0.011 3.989 13 N -0.351 5.351 14 C -0.372 4.372 15 H 0.096 0.904 16 C -0.255 4.255 17 N -0.596 5.596 18 Si 0.805 3.195 19 H -0.220 1.220 20 H -0.216 1.216 21 H -0.192 1.192 22 C 0.058 3.942 23 C -0.132 4.132 24 H 0.140 0.860 25 C -0.007 4.007 26 N -0.230 5.230 27 C -0.093 4.093 28 C -0.151 4.151 29 C -0.165 4.165 30 C -0.093 4.093 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.033 0.967 42 H 0.056 0.944 43 H -0.009 1.009 44 H 0.077 0.923 45 H 0.125 0.875 46 H 0.081 0.919 47 H 0.120 0.880 48 H 0.074 0.926 49 H 0.114 0.886 50 H 0.095 0.905 51 H 0.092 0.908 52 H 0.091 0.909 53 H 0.041 0.959 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.790 0.843 -19.010 20.562 hybrid contribution 1.276 -0.718 1.887 2.388 sum -6.514 0.124 -17.124 18.321 Atomic orbital electron populations 1.21689 0.94410 1.02176 1.00829 1.21134 0.96922 0.96585 0.94699 1.22062 1.02058 0.94676 1.02509 1.21955 0.97814 0.90447 0.93823 0.91933 1.20522 0.83860 0.78402 0.84930 1.90640 1.23633 1.65227 1.65056 1.48348 1.15326 1.37269 1.33445 1.21723 0.97830 0.91917 0.88384 1.22758 0.93187 1.00362 0.94592 0.84566 1.21363 0.90937 0.91921 0.94666 1.44573 1.44547 1.42460 1.03485 1.19436 1.16045 1.15907 0.85831 0.90367 1.25579 1.00356 0.99115 1.00490 1.70114 1.34422 1.29272 1.25796 0.85111 0.77186 0.78098 0.79154 1.21972 1.21564 1.19216 1.21165 0.99178 0.91147 0.82736 1.23208 0.97483 0.97766 0.94713 0.85960 1.22132 0.80646 1.00058 0.97860 1.64582 1.55328 0.99793 1.03327 1.23413 1.00113 0.93290 0.92461 1.22472 1.02547 0.95705 0.94387 1.22368 1.02052 0.93994 0.98040 1.22771 0.96432 0.95423 0.94700 0.95355 0.91067 0.92341 0.87705 0.90836 0.90182 0.93738 0.95388 0.90422 0.94417 0.96741 0.94420 1.00883 0.92331 0.87465 0.91852 0.88000 0.92649 0.88565 0.90478 0.90804 0.90895 0.95943 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.57 71.98 0.62 -2.37 16 2 C -0.07 -1.47 2.38 -10.79 -0.03 -1.49 16 3 C -0.16 -2.63 7.65 71.98 0.55 -2.07 16 4 C 0.07 1.90 1.13 44.17 0.05 1.95 16 5 H 0.06 1.63 6.31 -2.39 -0.02 1.61 16 6 C 0.53 18.42 4.57 87.66 0.40 18.82 16 7 O -0.57 -24.15 15.94 -3.02 -0.05 -24.19 16 8 N -0.61 -20.01 2.58 -817.67 -2.11 -22.13 16 9 C 0.12 4.25 6.22 86.59 0.54 4.79 16 10 C -0.09 -2.81 4.02 -9.48 -0.04 -2.85 16 11 H 0.14 3.12 8.14 -2.39 -0.02 3.10 16 12 C 0.14 5.56 6.62 86.59 0.57 6.13 16 13 N -0.62 -32.30 3.38 -697.58 -2.36 -34.66 16 14 C -0.24 -13.86 10.25 84.03 0.86 -13.00 16 15 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 16 C -0.06 -3.59 5.48 84.86 0.47 -3.12 16 17 N -0.95 -56.56 10.16 21.65 0.22 -56.34 16 18 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 C 0.18 8.79 4.92 86.65 0.43 9.22 16 23 C -0.11 -3.70 4.17 -9.32 -0.04 -3.74 16 24 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 25 C 0.12 3.24 4.90 86.65 0.42 3.66 16 26 N -0.51 -13.69 3.87 -862.23 -3.34 -17.04 16 27 C 0.03 0.63 5.32 86.65 0.46 1.09 16 28 C -0.11 -1.95 7.06 31.80 0.22 -1.73 16 29 C -0.13 -2.89 6.93 31.47 0.22 -2.68 16 30 C 0.03 1.09 5.93 86.45 0.51 1.60 16 31 H 0.03 0.79 6.98 -2.39 -0.02 0.77 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.46 7.35 -2.39 -0.02 1.44 16 34 H 0.10 1.55 6.98 -2.39 -0.02 1.53 16 35 H 0.07 1.03 7.12 -2.39 -0.02 1.01 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.04 0.94 5.97 -2.39 -0.01 0.92 16 38 H 0.03 1.19 7.29 -2.39 -0.02 1.17 16 39 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 40 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.01 0.62 7.44 -2.39 -0.02 0.61 16 42 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 43 H -0.03 -1.49 7.71 -2.39 -0.02 -1.51 16 44 H 0.06 3.20 6.18 -2.39 -0.01 3.19 16 45 H 0.11 2.15 5.77 -2.38 -0.01 2.14 16 46 H 0.06 1.90 6.88 -2.39 -0.02 1.88 16 47 H 0.10 1.55 7.69 -2.39 -0.02 1.53 16 48 H 0.06 0.94 8.02 -2.39 -0.02 0.92 16 49 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 53 H 0.02 0.77 7.66 -2.39 -0.02 0.75 16 54 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -74.98 393.97 1.47 -73.51 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.86 Total: 18.31 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 6.22 Total: 14.21 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -7.59 Total: -130.16 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -74.98 1.47 -73.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049234206.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.961 kcal (2) G-P(sol) polarization free energy of solvation -74.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds