Wall clock time and date at job start Tue Mar 31 2020 19:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47329 * 2 1 4 4 H 1.09000 * 110.45774 * 56.75461 * 3 2 1 5 5 C 1.54381 * 110.41092 * 294.34950 * 3 2 1 6 6 H 1.09005 * 110.41079 * 336.30225 * 5 3 2 7 7 C 1.50699 * 110.32698 * 98.47062 * 5 3 2 8 8 O 1.21279 * 119.99961 * 357.08372 * 7 5 3 9 9 N 1.34774 * 119.99804 * 177.08931 * 7 5 3 10 10 C 1.46804 * 119.57641 * 359.97438 * 9 7 5 11 11 C 1.53466 * 107.59661 * 127.96418 * 10 9 7 12 12 C 1.52737 * 108.43889 * 58.07892 * 11 10 9 13 13 C 1.53015 * 110.79681 * 296.22298 * 12 11 10 14 14 H 1.08998 * 111.38366 * 290.28130 * 13 12 11 15 15 C 1.43586 * 119.25705 * 179.22214 * 9 7 5 16 16 H 1.09004 * 109.83740 * 347.94245 * 15 9 7 17 17 C 1.54421 * 110.88452 * 110.62951 * 15 9 7 18 18 C 1.54567 * 102.45135 * 157.25620 * 17 15 9 19 19 N 1.48212 * 107.11663 * 168.08578 * 13 12 11 20 20 C 1.36933 * 125.77063 * 88.24135 * 19 13 12 21 21 H 1.07999 * 120.00038 * 0.02562 * 20 19 13 22 22 C 1.38808 * 120.00492 * 179.97438 * 20 19 13 23 23 N 1.31622 * 119.99559 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00586 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46702 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47332 * 119.99885 * 24 22 20 27 27 H 1.48495 * 109.47234 * 240.00449 * 24 22 20 28 28 C 1.54259 * 105.05789 * 217.36639 * 5 3 2 29 29 C 1.54384 * 105.06261 * 359.97438 * 28 5 3 30 30 N 1.48549 * 110.41288 * 179.17023 * 3 2 1 31 31 C 1.46897 * 111.00221 * 277.82003 * 30 3 2 32 32 H 1.08999 * 109.46744 * 305.67738 * 1 2 3 33 33 H 1.09004 * 109.46712 * 65.67582 * 1 2 3 34 34 H 1.08992 * 109.47101 * 185.67520 * 1 2 3 35 35 H 1.09001 * 109.46738 * 240.00444 * 2 1 3 36 36 H 1.08997 * 109.47473 * 120.00672 * 2 1 3 37 37 H 1.08994 * 109.83159 * 8.44280 * 10 9 7 38 38 H 1.08997 * 109.88334 * 247.51847 * 10 9 7 39 39 H 1.08998 * 109.64059 * 298.39718 * 11 10 9 40 40 H 1.08995 * 109.81446 * 177.86557 * 11 10 9 41 41 H 1.09002 * 109.21160 * 175.88567 * 12 11 10 42 42 H 1.08999 * 109.21279 * 56.55937 * 12 11 10 43 43 H 1.09006 * 110.81234 * 275.49866 * 17 15 9 44 44 H 1.09004 * 110.81193 * 39.02121 * 17 15 9 45 45 H 1.09003 * 109.88601 * 97.73709 * 18 17 15 46 46 H 1.08995 * 109.89209 * 218.75508 * 18 17 15 47 47 H 0.97005 * 119.99872 * 179.97438 * 23 22 20 48 48 H 1.08998 * 110.33042 * 118.89205 * 28 5 3 49 49 H 1.09004 * 110.32611 * 241.10552 * 28 5 3 50 50 H 1.08995 * 110.41345 * 142.63114 * 29 28 5 51 51 H 1.09002 * 110.41447 * 264.96177 * 29 28 5 52 52 H 1.08993 * 109.47450 * 300.20918 * 31 30 3 53 53 H 1.08999 * 109.47082 * 60.20804 * 31 30 3 54 54 H 1.09001 * 109.47304 * 180.20965 * 31 30 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6393 1.9884 0.8541 5 6 1.6572 2.1490 -1.3182 6 1 1.4965 1.4165 -2.1093 7 6 0.4200 2.9870 -1.1227 8 8 -0.1498 2.9866 -0.0521 9 7 -0.0532 3.7368 -2.1378 10 6 0.6441 3.7306 -3.4296 11 6 -0.3949 3.4223 -4.5162 12 6 -1.4925 4.4824 -4.4498 13 6 -2.2362 4.4115 -3.1144 14 1 -2.8427 3.5086 -3.0447 15 6 -1.2427 4.5162 -1.9392 16 1 -1.7301 4.2173 -1.0112 17 6 -0.9157 6.0253 -1.9230 18 6 -2.2727 6.6643 -2.2965 19 7 -3.0676 5.6343 -3.0127 20 6 -4.3455 5.7748 -3.4843 21 1 -4.8317 4.9482 -3.9810 22 6 -5.0164 6.9792 -3.3230 23 7 -4.4240 7.9864 -2.7172 24 14 -6.7598 7.1707 -3.9657 25 1 -7.1952 5.9011 -4.6015 26 1 -7.6699 7.4967 -2.8385 27 1 -6.8006 8.2660 -4.9676 28 6 2.8647 3.0472 -1.6569 29 6 3.8754 2.8083 -0.5146 30 7 3.5253 1.4669 0.0202 31 6 4.0361 1.2956 1.3867 32 1 -0.3633 0.5994 0.8348 33 1 -0.3633 0.4233 -0.9365 34 1 -0.3633 -1.0226 0.1016 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 1.4173 2.9625 -3.4287 38 1 1.0928 4.7068 -3.6133 39 1 -0.8264 2.4367 -4.3414 40 1 0.0787 3.4462 -5.4976 41 1 -2.1993 4.3182 -5.2631 42 1 -1.0443 5.4700 -4.5588 43 1 -0.5988 6.3422 -0.9294 44 1 -0.1568 6.2651 -2.6677 45 1 -2.7916 6.9867 -1.3938 46 1 -2.1120 7.5170 -2.9561 47 1 -4.8927 8.8283 -2.6048 48 1 3.2979 2.7545 -2.6134 49 1 2.5626 4.0942 -1.6818 50 1 4.8941 2.8086 -0.9021 51 1 3.7630 3.5692 0.2577 52 1 3.6618 2.1012 2.0183 53 1 3.7000 0.3373 1.7828 54 1 5.1258 1.3210 1.3732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049480122.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:26 Heat of formation + Delta-G solvation = -20.734743 kcal Electronic energy + Delta-G solvation = -31750.347648 eV Core-core repulsion = 27914.660978 eV Total energy + Delta-G solvation = -3835.686671 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.11868 -40.37924 -38.75264 -36.80060 -34.39253 -34.37043 -33.77764 -33.12879 -30.84561 -29.81041 -28.90168 -27.18085 -26.18608 -25.85230 -24.20381 -23.33184 -22.47071 -22.03075 -21.70952 -20.51658 -19.49845 -18.77818 -18.18869 -17.33977 -16.90898 -16.78581 -16.19447 -15.98062 -15.79592 -15.51484 -15.20217 -15.06927 -14.99169 -14.67385 -14.49136 -14.20349 -13.99894 -13.89087 -13.62237 -13.44824 -13.33819 -13.11736 -12.85718 -12.77766 -12.63808 -12.57498 -12.40678 -12.33567 -12.22303 -12.06551 -12.05253 -12.00331 -11.87824 -11.62861 -11.57569 -11.50494 -11.42022 -11.18057 -10.75741 -10.64649 -9.57664 -9.51464 -8.90457 -7.86432 -5.21270 1.43752 1.45182 1.55073 1.60867 1.96079 2.48305 2.97333 3.32580 3.44079 3.50484 3.58297 3.68252 3.86389 3.93060 4.04482 4.09760 4.13383 4.15715 4.22544 4.31322 4.36015 4.38036 4.43706 4.54681 4.57432 4.58913 4.62217 4.65840 4.68074 4.74949 4.82165 4.84479 4.93162 4.94684 4.97353 4.98834 5.08777 5.11239 5.13894 5.15555 5.21352 5.27841 5.36771 5.39065 5.43540 5.54479 5.62255 5.68213 5.70679 5.85128 6.02927 6.14769 6.46734 7.05064 7.20053 7.71916 8.40167 9.25095 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.021818 B = 0.002995 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.031818 B = 9346.128386 C = 9492.183048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C 0.075 3.925 4 H 0.040 0.960 5 C -0.101 4.101 6 H 0.128 0.872 7 C 0.513 3.487 8 O -0.580 6.580 9 N -0.586 5.586 10 C 0.101 3.899 11 C -0.124 4.124 12 C -0.118 4.118 13 C 0.151 3.849 14 H 0.043 0.957 15 C 0.148 3.852 16 H 0.065 0.935 17 C -0.132 4.132 18 C 0.190 3.810 19 N -0.619 5.619 20 C -0.232 4.232 21 H 0.082 0.918 22 C -0.067 4.067 23 N -0.952 5.952 24 Si 0.977 3.023 25 H -0.265 1.265 26 H -0.296 1.296 27 H -0.290 1.290 28 C -0.114 4.114 29 C 0.029 3.971 30 N -0.510 5.510 31 C 0.012 3.988 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.123 0.877 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.006 0.994 46 H 0.014 0.986 47 H 0.246 0.754 48 H 0.116 0.884 49 H 0.070 0.930 50 H 0.106 0.894 51 H 0.032 0.968 52 H 0.017 0.983 53 H 0.073 0.927 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.474 -15.303 -0.294 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 C -0.034 4.034 4 H 0.058 0.942 5 C -0.122 4.122 6 H 0.146 0.854 7 C 0.302 3.698 8 O -0.459 6.459 9 N -0.316 5.316 10 C -0.020 4.020 11 C -0.163 4.163 12 C -0.158 4.158 13 C 0.044 3.956 14 H 0.062 0.938 15 C 0.041 3.959 16 H 0.083 0.917 17 C -0.171 4.171 18 C 0.065 3.935 19 N -0.345 5.345 20 C -0.360 4.360 21 H 0.099 0.901 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.806 3.194 25 H -0.190 1.190 26 H -0.223 1.223 27 H -0.217 1.217 28 C -0.152 4.152 29 C -0.099 4.099 30 N -0.233 5.233 31 C -0.137 4.137 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.141 0.859 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.024 0.976 46 H 0.032 0.968 47 H 0.055 0.945 48 H 0.135 0.865 49 H 0.089 0.911 50 H 0.124 0.876 51 H 0.050 0.950 52 H 0.036 0.964 53 H 0.092 0.908 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 21.250 -15.566 -0.070 26.341 hybrid contribution -2.177 1.641 0.772 2.833 sum 19.073 -13.925 0.702 23.626 Atomic orbital electron populations 1.21687 0.96235 1.01276 1.00912 1.21357 0.94531 0.94329 1.03247 1.22558 0.88337 0.96867 0.95596 0.94235 1.22097 0.91975 0.97781 1.00378 0.85421 1.21192 0.86223 0.79287 0.83074 1.90670 1.61211 1.66466 1.27579 1.47203 1.26011 1.44734 1.13700 1.22292 0.95111 1.04164 0.80448 1.21906 0.95864 0.98403 1.00077 1.21888 0.97695 0.99244 0.96986 1.21514 0.90878 0.89243 0.93975 0.93847 1.20876 0.86097 0.90696 0.98212 0.91689 1.22911 0.97814 0.95247 1.01154 1.21070 0.88062 0.90417 0.93949 1.45282 1.12724 1.09765 1.66688 1.19411 0.89281 0.97576 1.29782 0.90061 1.25620 1.02435 0.96075 1.01889 1.70171 1.37733 1.03339 1.48894 0.85025 0.79568 0.77774 0.77078 1.18962 1.22303 1.21747 1.22510 0.92862 0.99011 1.00826 1.23218 1.00922 0.89227 0.96485 1.65409 1.07718 1.28826 1.21373 1.22564 1.01623 1.01115 0.88351 0.94606 0.94174 0.91570 0.89837 0.91448 0.85892 0.90034 0.91463 0.87759 0.93521 0.93041 0.91916 0.89781 0.97613 0.96754 0.94491 0.86549 0.91092 0.87585 0.94973 0.96408 0.90802 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.71 71.98 0.63 -2.58 16 2 C -0.10 -1.80 5.56 30.60 0.17 -1.63 16 3 C 0.08 1.57 1.72 45.07 0.08 1.64 16 4 H 0.04 1.11 6.76 -2.39 -0.02 1.10 16 5 C -0.10 -1.92 1.50 -10.64 -0.02 -1.93 16 6 H 0.13 1.93 7.34 -2.38 -0.02 1.91 16 7 C 0.51 14.45 5.97 87.66 0.52 14.98 16 8 O -0.58 -21.65 13.46 -3.02 -0.04 -21.69 16 9 N -0.59 -16.24 2.65 -797.73 -2.11 -18.35 16 10 C 0.10 1.89 4.96 86.48 0.43 2.32 16 11 C -0.12 -2.61 6.11 30.66 0.19 -2.43 16 12 C -0.12 -3.90 5.11 30.51 0.16 -3.74 16 13 C 0.15 6.18 3.55 45.09 0.16 6.34 16 14 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 15 C 0.15 5.54 3.06 46.43 0.14 5.69 16 16 H 0.06 2.91 6.89 -2.38 -0.02 2.89 16 17 C -0.13 -5.12 6.06 31.61 0.19 -4.93 16 18 C 0.19 9.68 5.29 86.52 0.46 10.13 16 19 N -0.62 -32.14 2.96 -663.42 -1.96 -34.11 16 20 C -0.23 -13.13 10.30 84.03 0.87 -12.26 16 21 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 22 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 23 N -0.95 -58.44 10.44 21.65 0.23 -58.22 16 24 Si 0.98 46.67 29.55 68.60 2.03 48.69 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 C -0.11 -1.59 4.95 31.49 0.16 -1.44 16 29 C 0.03 0.44 6.49 86.45 0.56 1.00 16 30 N -0.51 -8.66 5.34 -882.63 -4.72 -13.37 16 31 C 0.01 0.18 9.45 127.69 1.21 1.39 16 32 H 0.03 0.99 7.66 -2.39 -0.02 0.97 16 33 H 0.04 0.97 7.08 -2.38 -0.02 0.95 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.31 8.07 -2.39 -0.02 1.29 16 36 H 0.07 1.16 7.39 -2.39 -0.02 1.15 16 37 H 0.12 1.42 4.73 -2.39 -0.01 1.41 16 38 H 0.08 1.43 7.54 -2.39 -0.02 1.41 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.05 1.82 7.24 -2.39 -0.02 1.80 16 43 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 44 H 0.08 2.84 6.86 -2.39 -0.02 2.83 16 45 H 0.01 0.33 7.43 -2.39 -0.02 0.31 16 46 H 0.01 0.80 7.58 -2.39 -0.02 0.78 16 47 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 48 H 0.12 0.92 7.72 -2.39 -0.02 0.90 16 49 H 0.07 1.12 7.12 -2.38 -0.02 1.11 16 50 H 0.11 1.14 8.14 -2.39 -0.02 1.13 16 51 H 0.03 0.57 7.91 -2.39 -0.02 0.55 16 52 H 0.02 0.31 7.98 -2.39 -0.02 0.29 16 53 H 0.07 1.05 7.36 -2.39 -0.02 1.03 16 54 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -73.22 391.93 0.64 -72.58 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.86 Total: 15.37 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 6.36 Total: 9.10 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -8.57 Total: -124.05 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.04 Total: -21.69 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -73.22 0.64 -72.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049480122.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.847 kcal (2) G-P(sol) polarization free energy of solvation -73.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds