Wall clock time and date at job start Tue Mar 31 2020 19:17:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53000 * 109.46981 * 2 1
4 4 N 1.46894 * 109.47322 * 179.97438 * 3 2 1
5 5 C 1.48537 * 110.99810 * 52.60312 * 4 3 2
6 6 C 1.54945 * 103.22670 * 159.72015 * 5 4 3
7 7 C 1.54597 * 102.92059 * 322.58544 * 6 5 4
8 8 C 1.47903 * 111.00204 * 169.99740 * 4 3 2
9 9 H 1.08996 * 110.08524 * 333.60341 * 8 4 3
10 10 C 1.50707 * 109.91306 * 94.80453 * 8 4 3
11 11 O 1.21272 * 120.00112 * 359.04779 * 10 8 4
12 12 N 1.34776 * 119.99463 * 179.04372 * 10 8 4
13 13 C 1.47851 * 122.23052 * 359.97438 * 12 10 8
14 14 C 1.52713 * 111.06113 * 127.53418 * 13 12 10
15 15 C 1.53868 * 111.52467 * 48.53540 * 14 13 12
16 16 C 1.51348 * 107.26981 * 302.85531 * 15 14 13
17 17 H 1.08999 * 108.79555 * 308.77637 * 16 15 14
18 18 C 1.45735 * 122.22236 * 179.97438 * 12 10 8
19 19 H 1.09004 * 111.06912 * 118.57508 * 18 12 10
20 20 C 1.53429 * 116.36659 * 350.07165 * 18 12 10
21 21 C 1.55465 * 101.67265 * 207.27761 * 20 18 12
22 22 N 1.45027 * 119.02314 * 183.59638 * 16 15 14
23 23 C 1.36939 * 126.56162 * 29.31607 * 22 16 15
24 24 H 1.08003 * 119.99604 * 349.97110 * 23 22 16
25 25 C 1.38809 * 119.99935 * 169.96970 * 23 22 16
26 26 N 1.31618 * 120.00177 * 319.76835 * 25 23 22
27 27 Si 1.86797 * 119.99938 * 139.77207 * 25 23 22
28 28 H 1.48506 * 109.47189 * 359.97438 * 27 25 23
29 29 H 1.48502 * 109.47144 * 239.99871 * 27 25 23
30 30 H 1.48494 * 109.47323 * 119.99816 * 27 25 23
31 31 H 1.08996 * 109.47350 * 60.00056 * 1 2 3
32 32 H 1.09004 * 109.46933 * 180.02562 * 1 2 3
33 33 H 1.08998 * 109.47195 * 299.99483 * 1 2 3
34 34 H 1.08998 * 109.47195 * 240.00517 * 2 1 3
35 35 H 1.08996 * 109.47350 * 119.99944 * 2 1 3
36 36 H 1.09005 * 109.47257 * 59.99816 * 3 2 1
37 37 H 1.09006 * 109.47172 * 300.00079 * 3 2 1
38 38 H 1.09000 * 110.66556 * 41.29247 * 5 4 3
39 39 H 1.08997 * 110.66958 * 278.15661 * 5 4 3
40 40 H 1.08999 * 110.72419 * 204.23104 * 6 5 4
41 41 H 1.08996 * 110.72349 * 80.94631 * 6 5 4
42 42 H 1.08990 * 110.31123 * 263.03698 * 7 6 5
43 43 H 1.09000 * 110.39125 * 140.91373 * 7 6 5
44 44 H 1.09000 * 109.15604 * 247.93765 * 13 12 10
45 45 H 1.08996 * 109.15901 * 7.17906 * 13 12 10
46 46 H 1.09000 * 109.06975 * 169.05676 * 14 13 12
47 47 H 1.09001 * 109.07353 * 288.07561 * 14 13 12
48 48 H 1.09001 * 109.88250 * 62.52792 * 15 14 13
49 49 H 1.08999 * 109.89027 * 183.53692 * 15 14 13
50 50 H 1.09006 * 110.98384 * 89.18256 * 20 18 12
51 51 H 1.08994 * 111.02453 * 325.39652 * 20 18 12
52 52 H 1.09001 * 109.96583 * 263.21957 * 21 20 18
53 53 H 1.09001 * 109.96251 * 141.97999 * 21 20 18
54 54 H 0.97001 * 120.00300 * 353.68802 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5089 1.4426 0.0006
5 6 4.0417 0.6003 -1.1007
6 6 5.4897 1.1226 -1.2779
7 6 5.3386 2.6442 -1.0501
8 6 4.0390 2.8024 -0.2392
9 1 3.3174 3.3910 -0.8055
10 6 4.3332 3.4779 1.0755
11 8 4.1093 2.8997 2.1178
12 7 4.8452 4.7245 1.0928
13 6 5.1377 5.4741 -0.1476
14 6 4.4825 6.8533 -0.1227
15 6 4.7632 7.5879 1.1999
16 6 4.2602 6.7036 2.3205
17 1 3.2325 6.4125 2.1037
18 6 5.1474 5.4232 2.3355
19 1 6.2099 5.6568 2.4053
20 6 4.6384 4.7687 3.6264
21 6 4.4723 6.0010 4.5596
22 7 4.3277 7.1902 3.6850
23 6 4.2633 8.4970 4.0892
24 1 4.3145 9.2912 3.3590
25 6 4.1323 8.8009 5.4372
26 7 3.3370 8.0810 6.1999
27 14 5.0845 10.2317 6.1689
28 1 5.9020 10.8757 5.1095
29 1 5.9759 9.7334 7.2471
30 1 4.1332 11.2232 6.7320
31 1 -0.3634 0.5138 -0.8899
32 1 -0.3633 -1.0277 0.0005
33 1 -0.3633 0.5137 0.8900
34 1 1.8934 -0.5137 -0.8900
35 1 1.8934 -0.5138 0.8899
36 1 1.6766 1.9564 0.8900
37 1 1.6766 1.9564 -0.8900
38 1 3.4645 0.7499 -2.0132
39 1 4.0444 -0.4513 -0.8140
40 1 5.8532 0.9175 -2.2848
41 1 6.1518 0.6846 -0.5310
42 1 5.2544 3.1631 -2.0048
43 1 6.1868 3.0296 -0.4843
44 1 6.2166 5.5923 -0.2481
45 1 4.7581 4.9139 -1.0020
46 1 4.8718 7.4474 -0.9495
47 1 3.4054 6.7382 -0.2433
48 1 5.8343 7.7582 1.3092
49 1 4.2333 8.5402 1.2148
50 1 5.3745 4.0718 4.0273
51 1 3.6824 4.2716 3.4622
52 1 5.3530 6.1101 5.1924
53 1 3.5822 5.8826 5.1775
54 1 2.7735 7.3977 5.8043
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049507351.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:17:11
Heat of formation + Delta-G solvation = -15.093839 kcal
Electronic energy + Delta-G solvation = -31471.213254 eV
Core-core repulsion = 27635.771191 eV
Total energy + Delta-G solvation = -3835.442063 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-41.96110 -40.30841 -38.62506 -37.11517 -35.51573 -34.46204 -33.89112 -31.73168
-31.30945 -30.20115 -29.50338 -26.57132 -26.20467 -26.00030 -23.65253 -23.03225
-22.66250 -22.30004 -21.32144 -21.21370 -20.03914 -19.15299 -17.66757 -17.32995
-17.08864 -16.62032 -16.26056 -16.21781 -16.08631 -15.70690 -15.43900 -15.28137
-14.83617 -14.71189 -14.45072 -14.28567 -14.22154 -13.94015 -13.81456 -13.58852
-13.46793 -13.26650 -12.78027 -12.71259 -12.64496 -12.41851 -12.31024 -12.29476
-12.14390 -11.99772 -11.90377 -11.89614 -11.80881 -11.78725 -11.72710 -11.64565
-11.54990 -11.42904 -10.52766 -10.31822 -9.54257 -9.33635 -9.07919 -8.43286
-5.25126 1.56330 1.63253 1.68907 1.81424 1.85540 2.62826 2.92916
3.05244 3.25522 3.45118 3.58388 3.75915 3.85112 3.86776 3.92794
4.00820 4.01472 4.07241 4.10417 4.16371 4.22726 4.27647 4.35739
4.40949 4.41616 4.49767 4.57034 4.61426 4.70845 4.73150 4.74856
4.77988 4.82993 4.88046 4.91430 4.95497 5.00398 5.02841 5.07013
5.11681 5.12912 5.23069 5.23502 5.24961 5.28930 5.34238 5.41415
5.53550 5.74040 5.87414 6.06810 6.22639 6.54508 6.81150 7.30164
7.68733 8.33526 8.88713
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.017339 B = 0.003140 C = 0.002885
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1614.424854 B = 8913.719413 C = 9702.743769
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.115 4.115
3 C 0.052 3.948
4 N -0.522 5.522
5 C 0.037 3.963
6 C -0.119 4.119
7 C -0.118 4.118
8 C 0.055 3.945
9 H 0.089 0.911
10 C 0.514 3.486
11 O -0.560 6.560
12 N -0.604 5.604
13 C 0.106 3.894
14 C -0.121 4.121
15 C -0.108 4.108
16 C 0.153 3.847
17 H -0.015 1.015
18 C 0.137 3.863
19 H 0.087 0.913
20 C -0.100 4.100
21 C 0.141 3.859
22 N -0.607 5.607
23 C -0.350 4.350
24 H 0.070 0.930
25 C -0.076 4.076
26 N -0.925 5.925
27 Si 1.107 2.893
28 H -0.267 1.267
29 H -0.291 1.291
30 H -0.293 1.293
31 H 0.062 0.938
32 H 0.068 0.932
33 H 0.042 0.958
34 H 0.080 0.920
35 H 0.054 0.946
36 H 0.042 0.958
37 H 0.047 0.953
38 H 0.065 0.935
39 H 0.086 0.914
40 H 0.105 0.895
41 H 0.060 0.940
42 H 0.113 0.887
43 H 0.071 0.929
44 H 0.091 0.909
45 H 0.114 0.886
46 H 0.114 0.886
47 H 0.055 0.945
48 H 0.069 0.931
49 H 0.047 0.953
50 H 0.069 0.931
51 H 0.068 0.932
52 H 0.015 0.985
53 H 0.004 0.996
54 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.645 -14.112 -25.111 29.035
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.153 4.153
3 C -0.076 4.076
4 N -0.247 5.247
5 C -0.090 4.090
6 C -0.157 4.157
7 C -0.156 4.156
8 C -0.057 4.057
9 H 0.107 0.893
10 C 0.303 3.697
11 O -0.437 6.437
12 N -0.338 5.338
13 C -0.015 4.015
14 C -0.159 4.159
15 C -0.147 4.147
16 C 0.045 3.955
17 H 0.003 0.997
18 C 0.032 3.968
19 H 0.105 0.895
20 C -0.138 4.138
21 C 0.015 3.985
22 N -0.332 5.332
23 C -0.478 4.478
24 H 0.088 0.912
25 C -0.274 4.274
26 N -0.566 5.566
27 Si 0.932 3.068
28 H -0.192 1.192
29 H -0.218 1.218
30 H -0.220 1.220
31 H 0.081 0.919
32 H 0.087 0.913
33 H 0.061 0.939
34 H 0.099 0.901
35 H 0.073 0.927
36 H 0.061 0.939
37 H 0.065 0.935
38 H 0.083 0.917
39 H 0.104 0.896
40 H 0.123 0.877
41 H 0.079 0.921
42 H 0.132 0.868
43 H 0.090 0.910
44 H 0.110 0.890
45 H 0.132 0.868
46 H 0.132 0.868
47 H 0.074 0.926
48 H 0.088 0.912
49 H 0.066 0.934
50 H 0.088 0.912
51 H 0.087 0.913
52 H 0.033 0.967
53 H 0.022 0.978
54 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 4.006 -13.746 -22.652 26.798
hybrid contribution -1.362 -0.240 -0.849 1.623
sum 2.644 -13.986 -23.501 27.476
Atomic orbital electron populations
1.21727 0.94785 1.02462 1.01747 1.21512 0.96277 0.94905 1.02578
1.22291 0.86968 0.98437 0.99893 1.64278 1.08333 1.06912 1.45175
1.23332 0.95347 0.98169 0.92102 1.22514 0.96037 0.93976 1.03192
1.22547 0.94207 0.98536 1.00345 1.22366 0.99886 0.91550 0.91921
0.89317 1.21172 0.76151 0.80299 0.92073 1.90659 1.52853 1.64754
1.35463 1.48096 1.63725 1.14637 1.07295 1.22132 1.01908 0.92085
0.85384 1.21910 1.01209 0.95904 0.96924 1.21402 1.01147 0.98067
0.94036 1.21009 0.94464 0.93711 0.86312 0.99721 1.21972 0.98333
0.91998 0.84524 0.89531 1.22469 1.01897 0.94932 0.94499 1.21716
0.96976 0.86616 0.93213 1.44427 1.85198 1.02010 1.01600 1.19830
1.51242 0.82242 0.94470 0.91172 1.26999 0.99624 1.06279 0.94474
1.70876 1.21046 1.24346 1.40379 0.83035 0.75581 0.72869 0.75344
1.19184 1.21786 1.22001 0.91888 0.91315 0.93882 0.90117 0.92745
0.93938 0.93476 0.91703 0.89592 0.87708 0.92074 0.86849 0.91012
0.89034 0.86760 0.86760 0.92594 0.91204 0.93380 0.91196 0.91340
0.96689 0.97845 0.94083
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.33 9.91 71.98 0.71 -1.62 16
2 C -0.11 -2.03 5.59 30.59 0.17 -1.86 16
3 C 0.05 1.14 5.03 86.30 0.43 1.57 16
4 N -0.52 -11.80 4.53 -862.39 -3.91 -15.71 16
5 C 0.04 0.54 5.10 86.65 0.44 0.98 16
6 C -0.12 -1.47 7.06 31.80 0.22 -1.24 16
7 C -0.12 -1.58 4.92 31.47 0.15 -1.42 16
8 C 0.05 1.16 2.03 44.31 0.09 1.25 16
9 H 0.09 1.60 7.19 -2.39 -0.02 1.59 16
10 C 0.51 16.05 6.92 87.66 0.61 16.65 16
11 O -0.56 -22.97 13.29 -3.00 -0.04 -23.01 16
12 N -0.60 -17.68 2.88 -790.57 -2.27 -19.95 16
13 C 0.11 1.98 5.36 86.02 0.46 2.44 16
14 C -0.12 -2.62 5.92 30.79 0.18 -2.43 16
15 C -0.11 -3.61 5.41 30.35 0.16 -3.45 16
16 C 0.15 6.62 2.60 45.69 0.12 6.74 16
17 H -0.01 -0.71 8.05 -2.39 -0.02 -0.73 16
18 C 0.14 5.21 3.33 46.24 0.15 5.36 16
19 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16
20 C -0.10 -4.46 5.00 31.59 0.16 -4.30 16
21 C 0.14 7.50 6.03 86.88 0.52 8.02 16
22 N -0.61 -32.72 3.29 -669.61 -2.20 -34.93 16
23 C -0.35 -20.40 9.59 84.03 0.81 -19.59 16
24 H 0.07 4.00 7.51 -2.91 -0.02 3.98 16
25 C -0.08 -4.56 5.01 84.86 0.42 -4.13 16
26 N -0.93 -59.82 12.92 21.65 0.28 -59.54 16
27 Si 1.11 52.77 30.05 68.60 2.06 54.83 16
28 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
29 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16
30 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16
31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
32 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16
33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16
34 H 0.08 1.10 6.80 -2.39 -0.02 1.09 16
35 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16
36 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16
37 H 0.05 0.86 7.82 -2.38 -0.02 0.84 16
38 H 0.06 0.70 8.00 -2.39 -0.02 0.68 16
39 H 0.09 1.23 7.66 -2.39 -0.02 1.21 16
40 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16
41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
42 H 0.11 0.73 7.69 -2.39 -0.02 0.71 16
43 H 0.07 1.12 7.21 -2.39 -0.02 1.10 16
44 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16
45 H 0.11 1.36 5.01 -2.39 -0.01 1.35 16
46 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16
47 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16
48 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16
49 H 0.05 1.77 7.74 -2.39 -0.02 1.75 16
50 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16
51 H 0.07 3.32 6.21 -2.39 -0.01 3.31 16
52 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16
53 H 0.00 0.22 6.33 -2.39 -0.02 0.20 16
54 H 0.25 16.76 6.68 -92.71 -0.62 16.14 16
Total: -1.00 -79.95 396.95 0.75 -79.20
By element:
Atomic # 1 Polarization: 15.16 SS G_CDS: 1.00 Total: 16.16 kcal
Atomic # 6 Polarization: -2.88 SS G_CDS: 5.83 Total: 2.94 kcal
Atomic # 7 Polarization: -122.02 SS G_CDS: -8.11 Total: -130.12 kcal
Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.01 kcal
Atomic # 14 Polarization: 52.77 SS G_CDS: 2.06 Total: 54.83 kcal
Total: -79.95 0.75 -79.20 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049507351.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.111 kcal
(2) G-P(sol) polarization free energy of solvation -79.952 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.841 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.205 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.094 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds