Wall clock time and date at job start Tue Mar 31 2020 19:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47064 * 2 1 4 4 N 1.46904 * 109.47437 * 179.97438 * 3 2 1 5 5 C 1.48809 * 111.18030 * 52.65991 * 4 3 2 6 6 C 1.54943 * 103.34868 * 159.50485 * 5 4 3 7 7 C 1.54592 * 102.92289 * 322.69296 * 6 5 4 8 8 C 1.47902 * 111.00020 * 169.99391 * 4 3 2 9 9 H 1.08993 * 109.92173 * 333.71242 * 8 4 3 10 10 C 1.50702 * 109.91333 * 94.80805 * 8 4 3 11 11 O 1.21283 * 119.99814 * 359.59608 * 10 8 4 12 12 N 1.34776 * 119.99847 * 179.59583 * 10 8 4 13 13 C 1.46795 * 119.58024 * 359.97438 * 12 10 8 14 14 C 1.53464 * 107.59514 * 232.05203 * 13 12 10 15 15 C 1.52701 * 108.44621 * 301.91090 * 14 13 12 16 16 C 1.53015 * 110.79079 * 63.79162 * 15 14 13 17 17 H 1.09002 * 112.10100 * 69.25941 * 16 15 14 18 18 C 1.45124 * 119.57489 * 179.97438 * 12 10 8 19 19 H 1.09000 * 109.96983 * 11.93158 * 18 12 10 20 20 C 1.54422 * 111.60361 * 248.64691 * 18 12 10 21 21 C 1.54554 * 102.36132 * 203.21047 * 20 18 12 22 22 N 1.47121 * 107.26255 * 22.03040 * 21 20 18 23 23 C 1.36942 * 125.76304 * 182.48317 * 22 21 20 24 24 H 1.07999 * 119.99465 * 184.78020 * 23 22 21 25 25 C 1.38805 * 119.99733 * 4.77671 * 23 22 21 26 26 N 1.31615 * 120.00778 * 7.05239 * 25 23 22 27 27 Si 1.86811 * 119.99658 * 187.05165 * 25 23 22 28 28 H 1.48498 * 109.46837 * 265.01476 * 27 25 23 29 29 H 1.48496 * 109.46809 * 145.01477 * 27 25 23 30 30 H 1.48498 * 109.46908 * 25.01175 * 27 25 23 31 31 H 1.08998 * 109.46464 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47240 * 300.00134 * 1 2 3 33 33 H 1.08997 * 109.46847 * 60.00541 * 1 2 3 34 34 H 1.09000 * 109.47403 * 239.99336 * 2 1 3 35 35 H 1.09007 * 109.47339 * 119.99523 * 2 1 3 36 36 H 1.09000 * 109.47552 * 59.99428 * 3 2 1 37 37 H 1.09006 * 109.47023 * 299.99554 * 3 2 1 38 38 H 1.08999 * 110.52171 * 41.07866 * 5 4 3 39 39 H 1.08997 * 110.84371 * 278.09191 * 5 4 3 40 40 H 1.09004 * 110.72855 * 204.33317 * 6 5 4 41 41 H 1.09002 * 110.87124 * 81.12218 * 6 5 4 42 42 H 1.09006 * 110.30991 * 263.03965 * 7 6 5 43 43 H 1.08994 * 110.31531 * 140.86740 * 7 6 5 44 44 H 1.08999 * 109.83135 * 351.57599 * 13 12 10 45 45 H 1.09000 * 109.83331 * 112.52767 * 13 12 10 46 46 H 1.09002 * 109.63886 * 61.60815 * 14 13 12 47 47 H 1.09004 * 109.64143 * 182.23063 * 14 13 12 48 48 H 1.09005 * 109.23063 * 303.44753 * 15 14 13 49 49 H 1.09000 * 109.20599 * 184.11726 * 15 14 13 50 50 H 1.08995 * 110.81539 * 321.65311 * 20 18 12 51 51 H 1.09000 * 110.81150 * 84.98915 * 20 18 12 52 52 H 1.08996 * 109.99186 * 262.55061 * 21 20 18 53 53 H 1.09003 * 109.76399 * 141.37856 * 21 20 18 54 54 H 0.97000 * 120.00703 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0472 0.6008 -1.1022 6 6 5.4932 1.1277 -1.2814 7 6 5.3379 2.6486 -1.0523 8 6 4.0391 2.8023 -0.2393 9 1 3.3147 3.3890 -0.8040 10 6 4.3333 3.4779 1.0753 11 8 4.1187 2.8959 2.1175 12 7 4.8349 4.7287 1.0928 13 6 5.0916 5.4243 -0.1742 14 6 6.5390 5.9331 -0.1391 15 6 6.7001 6.8484 1.0725 16 6 6.4889 6.0703 2.3730 17 1 7.2955 5.3621 2.5628 18 6 5.1143 5.3707 2.3640 19 1 5.0631 4.6386 3.1699 20 6 4.1493 6.5462 2.6315 21 6 4.9508 7.4116 3.6301 22 7 6.3715 7.0673 3.4638 23 6 7.4097 7.5773 4.1969 24 1 8.4273 7.3174 3.9451 25 6 7.1541 8.4282 5.2633 26 7 5.9157 8.6356 5.6578 27 14 8.5680 9.2792 6.1388 28 1 8.9645 8.4832 7.3282 29 1 8.1394 10.6339 6.5702 30 1 9.7239 9.3966 5.2140 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6767 1.9563 -0.8901 38 1 3.4681 0.7492 -2.0136 39 1 4.0536 -0.4517 -0.8191 40 1 5.8558 0.9244 -2.2891 41 1 6.1603 0.6917 -0.5377 42 1 5.2505 3.1680 -2.0067 43 1 6.1860 3.0347 -0.4870 44 1 4.9623 4.7340 -1.0078 45 1 4.4063 6.2653 -0.2798 46 1 7.2223 5.0882 -0.0537 47 1 6.7535 6.4909 -1.0507 48 1 5.9682 7.6540 1.0137 49 1 7.7032 7.2750 1.0687 50 1 3.9452 7.0965 1.7131 51 1 3.2226 6.1915 3.0826 52 1 4.6335 7.1942 4.6499 53 1 4.7969 8.4678 3.4087 54 1 5.7371 9.2300 6.4032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049507352.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:15 Heat of formation + Delta-G solvation = -17.221832 kcal Electronic energy + Delta-G solvation = -31298.111738 eV Core-core repulsion = 27462.577398 eV Total energy + Delta-G solvation = -3835.534340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.93682 -40.24283 -38.68367 -36.82949 -35.45193 -34.16620 -33.67786 -31.71512 -31.29854 -30.35426 -29.40205 -26.60500 -26.34071 -25.82814 -23.71504 -23.16522 -22.72039 -21.93279 -21.32167 -20.95858 -19.38843 -18.76155 -18.25331 -17.29616 -17.13087 -16.79988 -16.22839 -16.02801 -15.87273 -15.72910 -15.14692 -15.09347 -14.78153 -14.63757 -14.28562 -14.14085 -14.07430 -13.83504 -13.78979 -13.59529 -13.30618 -13.03789 -12.85615 -12.72239 -12.59528 -12.49661 -12.34138 -12.28320 -12.25177 -12.11409 -12.02594 -11.89892 -11.75315 -11.72102 -11.56366 -11.52875 -11.42108 -11.18394 -10.74590 -10.64018 -9.55543 -9.30042 -8.89642 -7.83011 -5.22309 1.44228 1.46089 1.55340 1.68139 1.90839 2.48925 2.98753 3.31925 3.44626 3.54990 3.60642 3.82043 3.89317 3.94351 4.02682 4.06406 4.07914 4.10914 4.15145 4.20397 4.30123 4.36956 4.45669 4.53543 4.55963 4.58007 4.65946 4.67683 4.75082 4.78199 4.82338 4.85328 4.87436 4.89625 4.97008 5.04906 5.08849 5.16441 5.17040 5.20536 5.28074 5.32090 5.36719 5.38371 5.39184 5.55389 5.62238 5.66397 5.73814 5.89817 6.11418 6.18641 6.53535 7.07004 7.30301 7.74089 8.40012 9.24500 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.002894 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.463118 B = 9672.024073 C =10358.454902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.052 3.948 4 N -0.527 5.527 5 C 0.039 3.961 6 C -0.121 4.121 7 C -0.122 4.122 8 C 0.057 3.943 9 H 0.098 0.902 10 C 0.510 3.490 11 O -0.575 6.575 12 N -0.593 5.593 13 C 0.096 3.904 14 C -0.121 4.121 15 C -0.117 4.117 16 C 0.151 3.849 17 H 0.044 0.956 18 C 0.148 3.852 19 H 0.059 0.941 20 C -0.131 4.131 21 C 0.186 3.814 22 N -0.618 5.618 23 C -0.235 4.235 24 H 0.082 0.918 25 C -0.068 4.068 26 N -0.951 5.951 27 Si 0.978 3.022 28 H -0.290 1.290 29 H -0.293 1.293 30 H -0.266 1.266 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.118 0.882 43 H 0.068 0.932 44 H 0.124 0.876 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.106 0.894 48 H 0.052 0.948 49 H 0.049 0.951 50 H 0.084 0.916 51 H 0.060 0.940 52 H 0.022 0.978 53 H 0.002 0.998 54 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 -14.369 -24.223 28.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.075 4.075 4 N -0.252 5.252 5 C -0.088 4.088 6 C -0.159 4.159 7 C -0.160 4.160 8 C -0.055 4.055 9 H 0.116 0.884 10 C 0.298 3.702 11 O -0.453 6.453 12 N -0.325 5.325 13 C -0.024 4.024 14 C -0.160 4.160 15 C -0.157 4.157 16 C 0.044 3.956 17 H 0.062 0.938 18 C 0.042 3.958 19 H 0.077 0.923 20 C -0.170 4.170 21 C 0.060 3.940 22 N -0.343 5.343 23 C -0.364 4.364 24 H 0.099 0.901 25 C -0.261 4.261 26 N -0.600 5.600 27 Si 0.806 3.194 28 H -0.217 1.217 29 H -0.220 1.220 30 H -0.191 1.191 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.076 0.924 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.141 0.859 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.125 0.875 48 H 0.071 0.929 49 H 0.068 0.932 50 H 0.103 0.897 51 H 0.079 0.921 52 H 0.041 0.959 53 H 0.021 0.979 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.003 -14.729 -22.982 27.950 hybrid contribution 0.223 1.217 1.185 1.713 sum -5.781 -13.512 -21.797 26.289 Atomic orbital electron populations 1.21718 0.94604 1.02402 1.01894 1.21521 0.96413 0.95064 1.02441 1.22305 0.86642 0.98380 1.00215 1.64308 1.08610 1.06942 1.45297 1.23350 0.95157 0.98107 0.92189 1.22519 0.96182 0.94015 1.03156 1.22605 0.94396 0.98523 1.00489 1.22365 0.99890 0.91649 0.91618 0.88406 1.21384 0.76110 0.80594 0.92087 1.90662 1.53382 1.64985 1.36279 1.47641 1.63388 1.14663 1.06838 1.22336 0.97108 0.98230 0.84771 1.21886 0.96187 0.99596 0.98301 1.21855 1.01165 0.98427 0.94219 1.21582 0.94333 0.90227 0.89418 0.93753 1.21195 0.95123 0.93425 0.86054 0.92281 1.22872 0.97601 0.96609 0.99940 1.20916 0.83137 0.94338 0.95582 1.45013 1.03074 1.47306 1.38857 1.19402 0.87275 1.21962 1.07794 0.90066 1.25664 0.98977 1.02078 0.99345 1.70181 1.19102 1.41284 1.29462 0.85070 0.78656 0.77308 0.78353 1.21717 1.21987 1.19058 0.91533 0.93626 0.91762 0.90306 0.92951 0.93528 0.93079 0.91407 0.89746 0.87649 0.92414 0.86368 0.91295 0.85858 0.90450 0.91303 0.87537 0.92917 0.93238 0.89748 0.92098 0.95943 0.97940 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.92 5.60 30.59 0.17 -1.75 16 3 C 0.05 1.05 5.03 86.30 0.43 1.49 16 4 N -0.53 -11.66 4.54 -861.65 -3.91 -15.57 16 5 C 0.04 0.55 5.12 86.60 0.44 1.00 16 6 C -0.12 -1.57 7.06 31.80 0.22 -1.34 16 7 C -0.12 -1.70 4.73 31.47 0.15 -1.55 16 8 C 0.06 1.17 2.00 44.31 0.09 1.26 16 9 H 0.10 1.57 7.33 -2.39 -0.02 1.55 16 10 C 0.51 16.02 6.89 87.66 0.60 16.63 16 11 O -0.58 -24.51 15.78 -3.04 -0.05 -24.56 16 12 N -0.59 -17.63 2.71 -794.32 -2.15 -19.79 16 13 C 0.10 1.89 5.35 86.48 0.46 2.35 16 14 C -0.12 -2.55 6.10 30.65 0.19 -2.36 16 15 C -0.12 -3.85 5.10 30.50 0.16 -3.70 16 16 C 0.15 6.34 3.60 45.08 0.16 6.51 16 17 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 18 C 0.15 5.86 3.10 46.15 0.14 6.01 16 19 H 0.06 2.83 6.96 -2.39 -0.02 2.82 16 20 C -0.13 -5.28 6.08 31.61 0.19 -5.09 16 21 C 0.19 9.64 5.27 86.79 0.46 10.09 16 22 N -0.62 -32.52 2.91 -666.91 -1.94 -34.47 16 23 C -0.24 -13.47 10.28 84.03 0.86 -12.61 16 24 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 25 C -0.07 -3.96 5.46 84.86 0.46 -3.50 16 26 N -0.95 -59.05 10.44 21.65 0.23 -58.82 16 27 Si 0.98 46.92 29.56 68.60 2.03 48.95 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 29 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 30 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 1.01 6.81 -2.39 -0.02 1.00 16 35 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 0.81 7.81 -2.38 -0.02 0.79 16 38 H 0.07 0.69 8.00 -2.39 -0.02 0.67 16 39 H 0.08 1.21 7.69 -2.39 -0.02 1.19 16 40 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.12 0.76 7.45 -2.38 -0.02 0.75 16 43 H 0.07 1.20 6.96 -2.39 -0.02 1.18 16 44 H 0.12 1.49 4.07 -2.39 -0.01 1.48 16 45 H 0.08 1.44 7.53 -2.39 -0.02 1.42 16 46 H 0.07 1.44 7.92 -2.39 -0.02 1.42 16 47 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 48 H 0.05 1.85 7.13 -2.38 -0.02 1.83 16 49 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.08 2.94 6.80 -2.39 -0.02 2.92 16 51 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 52 H 0.02 1.34 6.85 -2.39 -0.02 1.33 16 53 H 0.00 0.14 7.99 -2.39 -0.02 0.12 16 54 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -78.22 396.99 0.97 -77.25 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.86 Total: 14.92 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 5.92 Total: 12.09 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -7.78 Total: -128.65 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.05 Total: -24.56 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -78.22 0.97 -77.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049507352.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.024 kcal (2) G-P(sol) polarization free energy of solvation -78.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds