Wall clock time and date at job start Tue Mar 31 2020 19:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47089 * 2 1 4 4 N 1.46898 * 109.47301 * 180.02562 * 3 2 1 5 5 C 1.47443 * 111.00239 * 69.15525 * 4 3 2 6 6 C 1.54312 * 107.23468 * 123.25565 * 5 4 3 7 7 C 1.55143 * 103.01591 * 22.28822 * 6 5 4 8 8 C 1.47847 * 111.00217 * 190.00094 * 4 3 2 9 9 H 1.09002 * 110.37008 * 332.57195 * 8 4 3 10 10 C 1.50700 * 110.37467 * 94.80346 * 8 4 3 11 11 O 1.21283 * 119.99803 * 0.02562 * 10 8 4 12 12 N 1.34777 * 119.99675 * 180.27895 * 10 8 4 13 13 C 1.45724 * 117.75920 * 359.45823 * 12 10 8 14 14 C 1.52460 * 109.88726 * 142.10690 * 13 12 10 15 15 C 1.52939 * 108.67964 * 53.28730 * 14 13 12 16 16 C 1.52926 * 109.79509 * 294.26178 * 15 14 13 17 17 H 1.09000 * 111.26692 * 293.35423 * 16 15 14 18 18 C 1.44193 * 117.75365 * 179.72712 * 12 10 8 19 19 H 1.08993 * 109.22865 * 332.58041 * 18 12 10 20 20 C 1.54071 * 111.76599 * 93.47992 * 18 12 10 21 21 C 1.54053 * 103.74573 * 153.24392 * 20 18 12 22 22 N 1.46889 * 107.70862 * 342.87580 * 21 20 18 23 23 C 1.36932 * 125.57894 * 177.06107 * 22 21 20 24 24 H 1.08006 * 119.99830 * 179.97438 * 23 22 21 25 25 C 1.38815 * 120.00249 * 359.97274 * 23 22 21 26 26 N 1.31618 * 120.00104 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99913 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47277 * 59.99958 * 27 25 23 29 29 H 1.48495 * 109.46793 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.46857 * 299.99606 * 27 25 23 31 31 H 1.09007 * 109.47088 * 300.00060 * 1 2 3 32 32 H 1.08999 * 109.47500 * 59.99693 * 1 2 3 33 33 H 1.09003 * 109.47318 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46998 * 240.00138 * 2 1 3 35 35 H 1.09000 * 109.47142 * 119.99618 * 2 1 3 36 36 H 1.09000 * 109.46979 * 59.99755 * 3 2 1 37 37 H 1.09003 * 109.46750 * 300.00334 * 3 2 1 38 38 H 1.09001 * 109.89045 * 242.66722 * 5 4 3 39 39 H 1.09003 * 109.88600 * 3.85146 * 5 4 3 40 40 H 1.09006 * 110.70282 * 140.66528 * 6 5 4 41 41 H 1.08993 * 110.71199 * 263.90587 * 6 5 4 42 42 H 1.09002 * 110.99123 * 206.25181 * 7 6 5 43 43 H 1.09001 * 110.99394 * 82.44034 * 7 6 5 44 44 H 1.09007 * 109.45750 * 261.16143 * 13 12 10 45 45 H 1.08998 * 109.46129 * 21.11141 * 13 12 10 46 46 H 1.08995 * 109.32389 * 293.65660 * 14 13 12 47 47 H 1.08994 * 109.74963 * 173.17293 * 14 13 12 48 48 H 1.09008 * 109.41554 * 174.16874 * 15 14 13 49 49 H 1.08992 * 109.36628 * 54.33220 * 15 14 13 50 50 H 1.08999 * 110.56994 * 271.80939 * 20 18 12 51 51 H 1.08997 * 110.56558 * 34.52846 * 20 18 12 52 52 H 1.09005 * 109.81070 * 102.42575 * 21 20 18 53 53 H 1.09001 * 109.81141 * 223.25550 * 21 20 18 54 54 H 0.96996 * 119.99918 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0369 0.9530 -1.2873 6 6 4.9550 2.0561 -1.8543 7 6 5.3444 2.8696 -0.5919 8 6 4.0389 2.8018 0.2391 9 1 3.3280 3.5526 -0.1061 10 6 4.3380 2.9978 1.7030 11 8 4.1346 2.0971 2.4893 12 7 4.8267 4.1757 2.1392 13 6 5.0586 5.2218 1.1515 14 6 4.6894 6.5798 1.7380 15 6 5.4351 6.7611 3.0609 16 6 4.9323 5.7405 4.0828 17 1 3.8954 5.9339 4.3575 18 6 5.0899 4.3123 3.5503 19 1 4.4272 3.6481 4.1050 20 6 6.5522 3.9705 3.8945 21 6 6.8287 4.7882 5.1705 22 7 5.7891 5.8209 5.2734 23 6 5.6535 6.7151 6.3014 24 1 4.8526 7.4396 6.2848 25 6 6.5452 6.6906 7.3650 26 7 7.5209 5.8074 7.3855 27 14 6.3597 7.9101 8.7678 28 1 5.0322 7.7295 9.4084 29 1 7.4289 7.6766 9.7713 30 1 6.4701 9.2934 8.2389 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 4.6093 0.0389 -1.1296 39 1 3.2147 0.7638 -1.9775 40 1 5.8391 1.6202 -2.3197 41 1 4.4133 2.6815 -2.5638 42 1 5.5891 3.8997 -0.8513 43 1 6.1701 2.3957 -0.0612 44 1 6.1143 5.2376 0.8803 45 1 4.4589 5.0222 0.2635 46 1 3.6146 6.6159 1.9154 47 1 4.9759 7.3705 1.0447 48 1 5.2616 7.7685 3.4395 49 1 6.5026 6.6143 2.8972 50 1 6.6599 2.9040 4.0922 51 1 7.2174 4.2784 3.0879 52 1 6.7892 4.1360 6.0430 53 1 7.8107 5.2565 5.1037 54 1 8.1442 5.7905 8.1285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049507353.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:19 Heat of formation + Delta-G solvation = -20.360431 kcal Electronic energy + Delta-G solvation = -31263.528182 eV Core-core repulsion = 27427.857743 eV Total energy + Delta-G solvation = -3835.670440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.99021 -40.26863 -38.73340 -36.92702 -35.42847 -34.24431 -33.86878 -31.65632 -31.36766 -30.37623 -29.52266 -26.59090 -26.38527 -25.85431 -23.65440 -23.21688 -22.80346 -22.07513 -21.27842 -20.68178 -19.46150 -18.80056 -18.57665 -17.20836 -17.01490 -16.78811 -16.38738 -16.02505 -15.99042 -15.49509 -15.33980 -15.02489 -14.93790 -14.53343 -14.44060 -14.07337 -13.89671 -13.85740 -13.66284 -13.60151 -13.51696 -13.14683 -12.87015 -12.73061 -12.64864 -12.59460 -12.37325 -12.31403 -12.23729 -12.10339 -11.95900 -11.88695 -11.78429 -11.64146 -11.56822 -11.56244 -11.46588 -11.19233 -10.70632 -10.63575 -9.56129 -9.20303 -8.92221 -7.85011 -5.22270 1.44582 1.48570 1.54649 1.67875 1.90551 2.49109 2.97018 3.31949 3.42306 3.58772 3.64809 3.81051 3.85124 3.94895 3.99828 4.02709 4.10140 4.11588 4.19744 4.20394 4.23619 4.34180 4.48281 4.54281 4.56450 4.59405 4.61798 4.66675 4.74562 4.79746 4.82167 4.85910 4.89776 4.93677 4.97217 5.00972 5.05843 5.12976 5.18211 5.20511 5.29897 5.36101 5.37119 5.39651 5.41557 5.54523 5.62567 5.71711 5.71877 5.96017 6.17495 6.18194 6.50159 7.07398 7.30458 7.75141 8.40042 9.24912 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.002871 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.822658 B = 9749.123120 C =10192.918692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.058 3.942 4 N -0.539 5.539 5 C 0.042 3.958 6 C -0.130 4.130 7 C -0.119 4.119 8 C 0.063 3.937 9 H 0.103 0.897 10 C 0.506 3.494 11 O -0.570 6.570 12 N -0.587 5.587 13 C 0.103 3.897 14 C -0.122 4.122 15 C -0.120 4.120 16 C 0.158 3.842 17 H 0.043 0.957 18 C 0.157 3.843 19 H 0.056 0.944 20 C -0.133 4.133 21 C 0.192 3.808 22 N -0.615 5.615 23 C -0.238 4.238 24 H 0.084 0.916 25 C -0.066 4.066 26 N -0.953 5.953 27 Si 0.980 3.020 28 H -0.279 1.279 29 H -0.296 1.296 30 H -0.273 1.273 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.118 0.882 46 H 0.068 0.932 47 H 0.108 0.892 48 H 0.051 0.949 49 H 0.049 0.951 50 H 0.054 0.946 51 H 0.075 0.925 52 H 0.009 0.991 53 H 0.010 0.990 54 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 -4.657 -26.429 28.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.069 4.069 4 N -0.264 5.264 5 C -0.085 4.085 6 C -0.168 4.168 7 C -0.157 4.157 8 C -0.048 4.048 9 H 0.121 0.879 10 C 0.295 3.705 11 O -0.448 6.448 12 N -0.320 5.320 13 C -0.019 4.019 14 C -0.160 4.160 15 C -0.160 4.160 16 C 0.051 3.949 17 H 0.062 0.938 18 C 0.050 3.950 19 H 0.074 0.926 20 C -0.172 4.172 21 C 0.067 3.933 22 N -0.340 5.340 23 C -0.366 4.366 24 H 0.102 0.898 25 C -0.259 4.259 26 N -0.601 5.601 27 Si 0.808 3.192 28 H -0.205 1.205 29 H -0.222 1.222 30 H -0.199 1.199 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.136 0.864 46 H 0.086 0.914 47 H 0.126 0.874 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.094 0.906 52 H 0.027 0.973 53 H 0.028 0.972 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.100 -5.402 -25.394 27.511 hybrid contribution 0.111 0.781 1.432 1.635 sum -8.990 -4.621 -23.963 26.007 Atomic orbital electron populations 1.21712 0.94509 1.02292 1.01976 1.21451 0.96199 0.95659 1.01941 1.22271 0.86400 0.97966 1.00287 1.62912 1.08552 1.21254 1.33678 1.22913 0.98683 0.98719 0.88191 1.22789 1.00480 0.96845 0.96703 1.22855 0.94276 1.03241 0.95378 1.22478 0.99563 0.92430 0.90377 0.87909 1.21352 0.76127 0.81337 0.91721 1.90666 1.53240 1.42712 1.58138 1.47086 1.64035 1.14393 1.06448 1.21861 1.02767 0.86406 0.90821 1.21725 1.00655 0.97344 0.96320 1.21896 0.99719 0.98845 0.95518 1.20952 0.93769 0.92702 0.87485 0.93849 1.20522 0.95744 0.96857 0.81842 0.92623 1.22761 0.96916 0.99196 0.98373 1.20703 0.91003 0.88956 0.92659 1.44568 1.31734 1.37283 1.20386 1.19356 1.10660 1.09225 0.97403 0.89779 1.25681 0.97710 1.01212 1.01319 1.70199 1.18817 1.38561 1.32559 0.85126 0.76841 0.78652 0.78549 1.20478 1.22211 1.19864 0.93543 0.91470 0.91869 0.90964 0.93670 0.93321 0.92607 0.91434 0.90741 0.89145 0.88896 0.86887 0.92078 0.90629 0.86389 0.91362 0.87360 0.93024 0.93235 0.92686 0.90640 0.97304 0.97207 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.11 -2.09 5.95 30.59 0.18 -1.91 16 3 C 0.06 1.15 4.53 86.30 0.39 1.54 16 4 N -0.54 -11.81 4.34 -864.99 -3.75 -15.57 16 5 C 0.04 0.63 6.20 86.64 0.54 1.16 16 6 C -0.13 -1.34 6.94 31.77 0.22 -1.12 16 7 C -0.12 -1.74 5.62 31.98 0.18 -1.56 16 8 C 0.06 1.28 1.83 44.64 0.08 1.36 16 9 H 0.10 1.58 6.89 -2.39 -0.02 1.56 16 10 C 0.51 15.66 7.03 87.66 0.62 16.27 16 11 O -0.57 -23.79 15.77 -3.04 -0.05 -23.84 16 12 N -0.59 -17.36 2.81 -803.61 -2.26 -19.62 16 13 C 0.10 1.99 4.77 86.35 0.41 2.40 16 14 C -0.12 -2.60 6.07 30.40 0.18 -2.41 16 15 C -0.12 -4.00 5.31 30.55 0.16 -3.84 16 16 C 0.16 6.60 3.23 44.97 0.15 6.75 16 17 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 18 C 0.16 6.18 2.76 45.86 0.13 6.30 16 19 H 0.06 2.58 7.10 -2.39 -0.02 2.56 16 20 C -0.13 -5.63 6.39 31.31 0.20 -5.43 16 21 C 0.19 10.18 5.38 86.66 0.47 10.65 16 22 N -0.62 -32.46 2.93 -673.77 -1.97 -34.43 16 23 C -0.24 -13.52 10.28 84.04 0.86 -12.66 16 24 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 25 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 26 N -0.95 -59.05 10.29 21.65 0.22 -58.82 16 27 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 28 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 29 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 30 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 31 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 1.11 7.09 -2.39 -0.02 1.10 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.18 8.08 -2.39 -0.02 1.16 16 37 H 0.06 0.81 7.98 -2.39 -0.02 0.79 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 0.86 6.88 -2.39 -0.02 0.84 16 40 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.11 1.02 6.36 -2.39 -0.02 1.00 16 43 H 0.06 1.19 8.05 -2.39 -0.02 1.17 16 44 H 0.08 1.33 8.00 -2.38 -0.02 1.31 16 45 H 0.12 1.40 4.94 -2.39 -0.01 1.39 16 46 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 49 H 0.05 1.78 7.98 -2.39 -0.02 1.76 16 50 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 51 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 52 H 0.01 0.53 7.25 -2.38 -0.02 0.51 16 53 H 0.01 0.56 7.60 -2.39 -0.02 0.55 16 54 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -77.20 400.91 1.02 -76.18 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.85 Total: 14.79 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 5.95 Total: 12.68 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -7.76 Total: -128.45 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -77.20 1.02 -76.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049507353.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.820 kcal (2) G-P(sol) polarization free energy of solvation -77.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds