Wall clock time and date at job start Tue Mar 31 2020 19:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47272 * 2 1 4 4 N 1.46897 * 109.47438 * 180.02562 * 3 2 1 5 5 C 1.48563 * 110.99531 * 290.12290 * 4 3 2 6 6 C 1.54381 * 104.59512 * 200.96112 * 5 4 3 7 7 C 1.54257 * 105.06013 * 23.85120 * 6 5 4 8 8 C 1.48720 * 111.01820 * 174.61715 * 4 3 2 9 9 H 1.09000 * 110.39015 * 40.23522 * 8 4 3 10 10 C 1.50705 * 110.50589 * 277.74659 * 8 4 3 11 11 O 1.21283 * 119.99877 * 3.41086 * 10 8 4 12 12 N 1.34770 * 120.00022 * 183.40786 * 10 8 4 13 13 C 1.47171 * 136.00113 * 359.63177 * 12 10 8 14 14 C 1.52667 * 87.96456 * 206.73479 * 13 12 10 15 15 C 1.47160 * 136.00218 * 179.97438 * 12 10 8 16 16 C 1.52550 * 113.91128 * 88.15116 * 14 13 12 17 17 C 1.53357 * 109.12928 * 190.30539 * 16 14 13 18 18 N 1.46884 * 108.75248 * 307.76376 * 17 16 14 19 19 C 1.36933 * 120.45962 * 235.60473 * 18 17 16 20 20 H 1.07993 * 120.00509 * 28.46396 * 19 18 17 21 21 C 1.38814 * 119.99551 * 208.46869 * 19 18 17 22 22 N 1.31617 * 120.00274 * 17.64858 * 21 19 18 23 23 Si 1.86804 * 119.99913 * 197.64768 * 21 19 18 24 24 H 1.48493 * 109.47061 * 59.99855 * 23 21 19 25 25 H 1.48503 * 109.47100 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46952 * 299.99855 * 23 21 19 27 27 C 1.46887 * 119.07293 * 55.62143 * 18 17 16 28 28 C 1.52552 * 114.24946 * 220.75199 * 14 13 12 29 29 H 1.09003 * 109.47391 * 299.99674 * 1 2 3 30 30 H 1.08997 * 109.47451 * 60.00212 * 1 2 3 31 31 H 1.09004 * 109.47091 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47100 * 239.99411 * 2 1 3 33 33 H 1.09001 * 109.46994 * 119.99651 * 2 1 3 34 34 H 1.08997 * 109.47195 * 59.99453 * 3 2 1 35 35 H 1.09010 * 109.46907 * 300.00014 * 3 2 1 36 36 H 1.08996 * 110.41491 * 82.17950 * 5 4 3 37 37 H 1.08998 * 110.41086 * 319.73769 * 5 4 3 38 38 H 1.09009 * 110.31933 * 264.95830 * 6 5 4 39 39 H 1.08998 * 110.32550 * 142.75076 * 6 5 4 40 40 H 1.08999 * 110.32280 * 118.89826 * 7 6 5 41 41 H 1.09005 * 110.32860 * 241.00682 * 7 6 5 42 42 H 1.08997 * 113.48828 * 321.43876 * 13 12 10 43 43 H 1.09006 * 113.48775 * 91.93791 * 13 12 10 44 44 H 1.09004 * 113.48890 * 268.06732 * 15 12 10 45 45 H 1.08996 * 113.48776 * 38.57129 * 15 12 10 46 46 H 1.09000 * 109.53405 * 310.20761 * 16 14 13 47 47 H 1.09004 * 109.52327 * 70.41508 * 16 14 13 48 48 H 1.09004 * 109.58840 * 187.98241 * 17 16 14 49 49 H 1.09004 * 109.58728 * 67.54421 * 17 16 14 50 50 H 0.97004 * 120.00496 * 179.97438 * 22 21 19 51 51 H 1.09004 * 109.59139 * 184.59002 * 27 18 17 52 52 H 1.09004 * 109.59101 * 64.14601 * 27 18 17 53 53 H 1.08990 * 109.52853 * 289.73846 * 28 14 13 54 54 H 1.08999 * 109.52619 * 49.88251 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0418 0.9651 1.3014 6 6 5.4837 1.5140 1.3564 7 6 5.4834 2.7365 0.4157 8 6 4.0423 2.8247 -0.1309 9 1 3.4507 3.5179 0.4670 10 6 4.0534 3.2522 -1.5759 11 8 3.6015 2.5181 -2.4290 12 7 4.5654 4.4504 -1.9202 13 6 5.1772 5.5842 -1.2088 14 6 4.6942 6.4857 -2.3423 15 6 4.7525 5.2016 -3.1718 16 6 3.2844 7.0323 -2.1396 17 6 2.8131 7.7002 -3.4371 18 7 3.8304 8.6690 -3.8661 19 6 3.4949 9.9793 -4.0797 20 1 2.6748 10.4225 -3.5345 21 6 4.2089 10.7378 -4.9972 22 7 4.9589 10.1433 -5.9008 23 14 4.1052 12.6023 -4.9495 24 1 4.5827 13.0910 -3.6311 25 1 4.9537 13.1730 -6.0264 26 1 2.6964 13.0251 -5.1535 27 6 5.2125 8.2124 -4.0632 28 6 5.7014 7.5486 -2.7700 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 4.0483 -0.1243 1.3331 37 1 3.4506 1.3667 2.1243 38 1 6.1886 0.7626 1.0005 39 1 5.7345 1.8183 2.3726 40 1 5.7340 3.6409 0.9701 41 1 6.1894 2.5860 -0.4011 42 1 4.7047 5.8021 -0.2510 43 1 6.2630 5.5183 -1.1388 44 1 5.7217 5.0306 -3.6403 45 1 3.9217 5.0969 -3.8696 46 1 2.6098 6.2150 -1.8845 47 1 3.2906 7.7660 -1.3335 48 1 1.8689 8.2157 -3.2607 49 1 2.6799 6.9434 -4.2102 50 1 5.4575 10.6733 -6.5422 51 1 5.8490 9.0653 -4.2994 52 1 5.2463 7.4911 -4.8798 53 1 5.7925 8.3005 -1.9864 54 1 6.6715 7.0827 -2.9427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050538123.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:02 Heat of formation + Delta-G solvation = 6.399057 kcal Electronic energy + Delta-G solvation = -30519.694248 eV Core-core repulsion = 26685.184187 eV Total energy + Delta-G solvation = -3834.510061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.06753 -40.53564 -38.70133 -37.49876 -35.52703 -34.25598 -32.37039 -31.75648 -31.50458 -30.55255 -28.34330 -27.08485 -26.48111 -25.91545 -23.99768 -23.35057 -22.75014 -22.26817 -21.31732 -20.15021 -19.49050 -18.36477 -18.02739 -17.30668 -17.08953 -16.78125 -16.54104 -16.10394 -15.70229 -15.40150 -15.37616 -15.16180 -14.93224 -14.82396 -14.42414 -14.18930 -13.99276 -13.90097 -13.70181 -13.52366 -13.34624 -13.07218 -12.93885 -12.80213 -12.76930 -12.59015 -12.52723 -12.29571 -12.26282 -12.16863 -12.02285 -11.83745 -11.80494 -11.58464 -11.51432 -11.29903 -11.24848 -11.14973 -10.66163 -10.46664 -9.69821 -9.46500 -8.63692 -7.84779 -5.30546 1.49255 1.50632 1.57820 1.60484 1.77315 2.53536 2.93191 3.24823 3.34659 3.43224 3.56851 3.70303 3.82304 3.87287 3.95851 4.05961 4.10120 4.15945 4.24212 4.27688 4.42167 4.43683 4.49514 4.51487 4.53785 4.60512 4.62217 4.70209 4.71920 4.72705 4.80519 4.82204 4.88506 4.90257 4.93418 5.01997 5.03382 5.10588 5.14302 5.15124 5.20105 5.21690 5.29899 5.35641 5.36287 5.37321 5.55714 5.67918 5.79634 5.83488 6.03459 6.42471 6.79272 7.18036 7.18463 7.89654 8.40825 9.20678 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.002479 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.633005 B =11291.533751 C =11922.361411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C 0.050 3.950 4 N -0.514 5.514 5 C 0.032 3.968 6 C -0.117 4.117 7 C -0.108 4.108 8 C 0.055 3.945 9 H 0.088 0.912 10 C 0.542 3.458 11 O -0.578 6.578 12 N -0.642 5.642 13 C 0.120 3.880 14 C -0.077 4.077 15 C 0.110 3.890 16 C -0.090 4.090 17 C 0.144 3.856 18 N -0.607 5.607 19 C -0.263 4.263 20 H 0.065 0.935 21 C -0.049 4.049 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.274 1.274 25 H -0.296 1.296 26 H -0.279 1.279 27 C 0.175 3.825 28 C -0.107 4.107 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.045 0.955 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.050 0.950 49 H 0.000 1.000 50 H 0.250 0.750 51 H 0.057 0.943 52 H -0.008 1.008 53 H 0.068 0.932 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.122 -16.856 20.687 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.078 4.078 4 N -0.239 5.239 5 C -0.095 4.095 6 C -0.155 4.155 7 C -0.147 4.147 8 C -0.057 4.057 9 H 0.106 0.894 10 C 0.333 3.667 11 O -0.458 6.458 12 N -0.376 5.376 13 C -0.001 4.001 14 C -0.078 4.078 15 C -0.013 4.013 16 C -0.129 4.129 17 C 0.018 3.982 18 N -0.330 5.330 19 C -0.393 4.393 20 H 0.082 0.918 21 C -0.245 4.245 22 N -0.580 5.580 23 Si 0.794 3.206 24 H -0.200 1.200 25 H -0.222 1.222 26 H -0.205 1.205 27 C 0.049 3.951 28 C -0.147 4.147 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.069 0.931 49 H 0.018 0.982 50 H 0.059 0.941 51 H 0.075 0.925 52 H 0.010 0.990 53 H 0.087 0.913 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.015 -17.753 19.733 26.562 hybrid contribution -0.578 1.515 -0.670 1.755 sum 0.437 -16.237 19.062 25.044 Atomic orbital electron populations 1.21722 0.94718 1.02423 1.01770 1.21394 0.96124 0.95092 1.02215 1.22274 0.87083 0.98443 1.00012 1.65045 1.08713 1.17284 1.32871 1.23246 0.95726 1.01497 0.89009 1.22313 0.96070 0.96695 1.00459 1.22282 0.92128 1.00851 0.99393 1.22539 0.99756 0.92327 0.91073 0.89397 1.20526 0.76547 0.78192 0.91459 1.90671 1.48732 1.52856 1.53493 1.49719 1.59684 1.16131 1.12110 1.23215 0.99897 0.80008 0.97012 1.21529 0.96828 0.92842 0.96581 1.23032 1.01069 0.88330 0.88918 1.21491 0.94103 0.99006 0.98309 1.20971 0.92100 0.91199 0.93941 1.44280 1.04374 1.05283 1.79086 1.19467 1.16175 0.87284 1.16382 0.91768 1.25776 1.01173 1.02354 0.95163 1.70183 1.34304 1.35392 1.18161 0.85374 0.77410 0.80756 0.77089 1.20031 1.22204 1.20512 1.20632 0.85471 0.96270 0.92684 1.21824 0.97030 0.97042 0.98754 0.91854 0.93762 0.91417 0.93056 0.90680 0.93484 0.93479 0.89282 0.92271 0.90879 0.88397 0.87853 0.92071 0.88217 0.87021 0.89240 0.93602 0.92191 0.90748 0.93131 0.98157 0.94119 0.92510 0.98972 0.91329 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.60 16 2 C -0.11 -2.02 5.99 30.59 0.18 -1.84 16 3 C 0.05 1.08 4.62 86.30 0.40 1.47 16 4 N -0.51 -11.28 4.66 -860.60 -4.01 -15.29 16 5 C 0.03 0.46 5.74 86.45 0.50 0.95 16 6 C -0.12 -1.36 7.00 31.49 0.22 -1.14 16 7 C -0.11 -1.61 6.05 31.49 0.19 -1.42 16 8 C 0.05 1.15 2.55 44.29 0.11 1.26 16 9 H 0.09 1.61 8.00 -2.39 -0.02 1.59 16 10 C 0.54 16.22 7.14 87.66 0.63 16.84 16 11 O -0.58 -23.07 16.50 -3.04 -0.05 -23.12 16 12 N -0.64 -17.26 3.43 -858.47 -2.94 -20.20 16 13 C 0.12 2.40 7.13 83.22 0.59 2.99 16 14 C -0.08 -2.18 0.83 -52.59 -0.04 -2.22 16 15 C 0.11 3.39 7.57 83.33 0.63 4.02 16 16 C -0.09 -2.85 5.26 30.56 0.16 -2.69 16 17 C 0.14 5.98 6.41 86.43 0.55 6.54 16 18 N -0.61 -29.78 2.96 -698.65 -2.07 -31.85 16 19 C -0.26 -14.24 9.56 84.03 0.80 -13.44 16 20 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 21 C -0.05 -2.71 4.89 84.86 0.42 -2.30 16 22 N -0.93 -54.82 11.21 21.65 0.24 -54.57 16 23 Si 0.97 44.22 29.59 68.60 2.03 46.25 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 C 0.17 8.00 5.27 86.43 0.46 8.46 16 28 C -0.11 -3.44 5.31 30.57 0.16 -3.28 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.11 7.26 -2.39 -0.02 1.09 16 34 H 0.05 0.84 7.88 -2.39 -0.02 0.82 16 35 H 0.05 1.32 7.33 -2.38 -0.02 1.30 16 36 H 0.09 1.18 7.76 -2.39 -0.02 1.16 16 37 H 0.06 0.68 7.82 -2.39 -0.02 0.66 16 38 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.11 7.85 -2.38 -0.02 1.09 16 42 H 0.10 1.54 8.10 -2.39 -0.02 1.52 16 43 H 0.11 1.71 8.09 -2.38 -0.02 1.69 16 44 H 0.09 2.61 8.06 -2.38 -0.02 2.59 16 45 H 0.05 1.69 7.53 -2.39 -0.02 1.68 16 46 H 0.06 1.80 7.95 -2.39 -0.02 1.78 16 47 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 48 H 0.05 2.10 7.92 -2.38 -0.02 2.08 16 49 H 0.00 0.02 7.60 -2.38 -0.02 0.00 16 50 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 51 H 0.06 2.97 5.97 -2.38 -0.01 2.96 16 52 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 53 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 54 H 0.08 2.17 8.09 -2.39 -0.02 2.15 16 Total: -1.00 -71.94 411.72 0.72 -71.22 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.84 Total: 14.96 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 6.67 Total: 12.60 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -8.77 Total: -121.91 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.94 0.72 -71.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050538123.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.619 kcal (2) G-P(sol) polarization free energy of solvation -71.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds