Wall clock time and date at job start Tue Mar 31 2020 19:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.35188 * 2 1 4 4 C 1.54597 * 110.31050 * 122.14369 * 2 1 3 5 5 C 1.54932 * 102.92574 * 140.87157 * 4 2 1 6 6 N 1.48533 * 103.22644 * 322.58677 * 5 4 2 7 7 C 1.46900 * 111.00368 * 159.72077 * 6 5 4 8 8 C 1.50698 * 109.46973 * 52.60049 * 7 6 5 9 9 O 1.21277 * 120.00106 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99736 * 180.02562 * 8 7 6 11 11 C 1.46928 * 120.71488 * 0.02562 * 10 8 7 12 12 C 1.53204 * 108.94097 * 125.71922 * 11 10 8 13 13 C 1.53193 * 109.26784 * 55.30836 * 12 11 10 14 14 C 1.52061 * 109.68204 * 300.04062 * 13 12 11 15 15 C 1.54354 * 110.60821 * 295.84790 * 14 13 12 16 16 C 1.54462 * 103.02593 * 276.53380 * 15 14 13 17 17 N 1.47087 * 107.29810 * 338.43656 * 16 15 14 18 18 C 1.36936 * 125.62548 * 179.03792 * 17 16 15 19 19 H 1.08007 * 120.00026 * 179.97438 * 18 17 16 20 20 C 1.38809 * 120.00104 * 359.97438 * 18 17 16 21 21 N 1.31620 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00332 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46890 * 59.99293 * 22 20 18 24 24 H 1.48493 * 109.47583 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46975 * 299.99837 * 22 20 18 26 26 C 1.47576 * 108.74801 * 359.02351 * 17 16 15 27 27 C 1.47119 * 120.71462 * 180.02562 * 10 8 7 28 28 C 1.47906 * 105.82003 * 39.20436 * 6 5 4 29 29 H 1.09001 * 109.47182 * 182.14759 * 1 2 3 30 30 H 1.08999 * 109.46970 * 302.13801 * 1 2 3 31 31 H 1.08999 * 109.47309 * 62.14164 * 1 2 3 32 32 H 1.09006 * 110.72399 * 259.23366 * 4 2 1 33 33 H 1.09004 * 110.72748 * 22.33359 * 4 2 1 34 34 H 1.09002 * 110.67160 * 204.14992 * 5 4 2 35 35 H 1.08998 * 110.66897 * 81.02002 * 5 4 2 36 36 H 1.09009 * 109.46916 * 292.60145 * 7 6 5 37 37 H 1.09002 * 109.47415 * 172.60310 * 7 6 5 38 38 H 1.08998 * 109.56191 * 245.55178 * 11 10 8 39 39 H 1.09002 * 109.56331 * 5.77462 * 11 10 8 40 40 H 1.09003 * 109.50441 * 175.24470 * 12 11 10 41 41 H 1.08994 * 109.50458 * 295.32764 * 12 11 10 42 42 H 1.09001 * 109.42993 * 179.97438 * 13 12 11 43 43 H 1.09002 * 109.43539 * 60.11250 * 13 12 11 44 44 H 1.09002 * 110.73640 * 158.10065 * 15 14 13 45 45 H 1.09001 * 110.73355 * 34.96977 * 15 14 13 46 46 H 1.09007 * 109.87817 * 97.85838 * 16 15 14 47 47 H 1.08994 * 109.87802 * 219.01256 * 16 15 14 48 48 H 0.96997 * 120.00580 * 180.02562 * 21 20 18 49 49 H 1.08996 * 110.37741 * 142.10118 * 26 17 16 50 50 H 1.09004 * 110.37418 * 264.33313 * 26 17 16 51 51 H 1.08996 * 109.58020 * 112.48437 * 27 10 8 52 52 H 1.09003 * 109.68196 * 352.15252 * 27 10 8 53 53 H 1.08998 * 109.91642 * 94.02560 * 28 6 5 54 54 H 1.09007 * 109.91573 * 215.11924 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0666 -0.7714 1.2276 5 6 3.2855 -1.5348 0.6515 6 7 2.8313 -1.9236 -0.7082 7 6 3.9751 -2.2263 -1.5789 8 6 4.8663 -3.2370 -0.9042 9 8 4.5769 -3.6635 0.1936 10 7 5.9850 -3.6669 -1.5208 11 6 6.3508 -3.1603 -2.8506 12 6 7.7772 -2.6039 -2.7956 13 6 8.7229 -3.6883 -2.2697 14 6 8.2898 -4.1134 -0.8755 15 6 8.4216 -2.9380 0.1163 16 6 9.9111 -2.9902 0.5220 17 7 10.3922 -4.3524 0.2454 18 6 11.6687 -4.8042 0.4494 19 1 11.9236 -5.8270 0.2139 20 6 12.6350 -3.9478 0.9588 21 7 12.3246 -2.7012 1.2452 22 14 14.3761 -4.5643 1.2378 23 1 14.9501 -5.0267 -0.0515 24 1 15.2097 -3.4633 1.7837 25 1 14.3529 -5.6931 2.2024 26 6 9.2723 -5.1518 -0.2880 27 6 6.8661 -4.6536 -0.8770 28 6 2.0645 -0.7684 -1.2228 29 1 -0.3633 -1.0269 0.0385 30 1 -0.3633 0.5467 0.8702 31 1 -0.3634 0.4802 -0.9085 32 1 2.3791 -0.0806 2.0108 33 1 1.3162 -1.4661 1.6050 34 1 3.5047 -2.4183 1.2512 35 1 4.1564 -0.8819 0.5941 36 1 4.5394 -1.3131 -1.7680 37 1 3.6148 -2.6330 -2.5238 38 1 6.3037 -3.9723 -3.5762 39 1 5.6600 -2.3693 -3.1426 40 1 8.0892 -2.3027 -3.7957 41 1 7.8059 -1.7411 -2.1302 42 1 9.7388 -3.2953 -2.2300 43 1 8.6938 -4.5497 -2.9371 44 1 7.7798 -3.0913 0.9839 45 1 8.1877 -1.9923 -0.3727 46 1 10.4806 -2.2696 -0.0651 47 1 10.0138 -2.7695 1.5844 48 1 12.9999 -2.1026 1.6009 49 1 9.6248 -5.8247 -1.0697 50 1 8.7951 -5.7177 0.5121 51 1 6.8315 -5.5911 -1.4318 52 1 6.5388 -4.8238 0.1488 53 1 2.7162 -0.1226 -1.8114 54 1 1.2347 -1.1176 -1.8375 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054197579.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:36 Heat of formation + Delta-G solvation = -20.651851 kcal Electronic energy + Delta-G solvation = -30849.047004 eV Core-core repulsion = 27013.363928 eV Total energy + Delta-G solvation = -3835.683076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.71076 -40.39708 -39.12739 -37.26108 -34.83012 -34.26379 -33.10206 -31.92260 -30.74844 -30.44184 -28.75581 -27.31394 -26.51490 -25.74207 -24.85103 -23.27455 -22.40026 -22.04679 -20.95799 -20.39078 -19.50966 -18.63084 -18.13182 -17.40987 -16.88970 -16.64362 -16.47932 -16.10727 -16.04593 -15.74024 -15.05511 -14.90920 -14.70243 -14.57654 -14.45104 -14.16726 -14.12877 -13.97088 -13.85026 -13.44626 -13.41151 -13.25931 -12.93279 -12.89918 -12.77805 -12.55260 -12.37060 -12.23004 -12.15978 -12.05753 -11.89775 -11.79356 -11.72008 -11.65560 -11.52889 -11.46266 -11.25757 -11.18779 -10.71059 -10.51242 -9.56645 -9.35320 -8.90580 -7.85636 -5.21287 1.43683 1.47498 1.53619 1.65158 1.94347 2.48717 3.05883 3.32281 3.43788 3.57193 3.69303 3.72265 3.82710 3.90999 3.93238 3.99607 4.14766 4.21290 4.27517 4.31361 4.34977 4.39243 4.48685 4.55741 4.58215 4.61753 4.67082 4.68888 4.74227 4.79598 4.87101 4.88455 4.91697 4.93617 4.96031 4.97591 5.07174 5.13144 5.19484 5.24428 5.26128 5.27662 5.42416 5.45937 5.46969 5.51441 5.57535 5.63982 5.74494 5.88726 6.00357 6.17374 6.50163 7.08497 7.24882 7.76246 8.42068 9.24793 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.021471 B = 0.002565 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.800237 B =10915.115150 C =11472.532478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 H 0.082 0.918 4 C -0.120 4.120 5 C 0.034 3.966 6 N -0.518 5.518 7 C 0.034 3.966 8 C 0.508 3.492 9 O -0.570 6.570 10 N -0.605 5.605 11 C 0.108 3.892 12 C -0.129 4.129 13 C -0.093 4.093 14 C -0.067 4.067 15 C -0.112 4.112 16 C 0.195 3.805 17 N -0.622 5.622 18 C -0.240 4.240 19 H 0.084 0.916 20 C -0.069 4.069 21 N -0.954 5.954 22 Si 0.980 3.020 23 H -0.273 1.273 24 H -0.296 1.296 25 H -0.279 1.279 26 C 0.141 3.859 27 C 0.140 3.860 28 C 0.039 3.961 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.028 0.972 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.042 0.958 45 H 0.072 0.928 46 H 0.013 0.987 47 H -0.007 1.007 48 H 0.246 0.754 49 H 0.051 0.949 50 H 0.015 0.985 51 H 0.085 0.915 52 H 0.065 0.935 53 H 0.057 0.943 54 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.814 5.380 -12.570 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 H 0.100 0.900 4 C -0.158 4.158 5 C -0.094 4.094 6 N -0.243 5.243 7 C -0.097 4.097 8 C 0.297 3.703 9 O -0.449 6.449 10 N -0.338 5.338 11 C -0.014 4.014 12 C -0.167 4.167 13 C -0.131 4.131 14 C -0.069 4.069 15 C -0.150 4.150 16 C 0.070 3.930 17 N -0.348 5.348 18 C -0.369 4.369 19 H 0.102 0.898 20 C -0.262 4.262 21 N -0.603 5.603 22 Si 0.808 3.192 23 H -0.199 1.199 24 H -0.222 1.222 25 H -0.205 1.205 26 C 0.016 3.984 27 C 0.017 3.983 28 C -0.089 4.089 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.099 0.901 37 H 0.149 0.851 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.031 0.969 47 H 0.011 0.989 48 H 0.055 0.945 49 H 0.069 0.931 50 H 0.033 0.967 51 H 0.103 0.897 52 H 0.084 0.916 53 H 0.075 0.925 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.101 4.753 -11.935 26.433 hybrid contribution 2.215 0.474 0.935 2.451 sum -20.886 5.226 -11.000 24.177 Atomic orbital electron populations 1.21783 0.93311 1.01911 1.02374 1.22016 0.97291 0.99019 0.93768 0.90003 1.22610 0.96875 0.98600 0.97714 1.23320 0.96138 0.98851 0.91087 1.64663 1.19980 1.37529 1.02084 1.22327 0.91600 0.97675 0.98106 1.21047 0.81294 0.82600 0.85356 1.90638 1.73152 1.59152 1.22005 1.48209 1.22647 1.43110 1.19871 1.22028 0.96226 1.00622 0.82502 1.21963 0.94592 0.97633 1.02552 1.21176 0.98713 0.99534 0.93689 1.21356 0.94119 0.95241 0.96186 1.22616 0.95924 0.98681 0.97806 1.20804 0.90096 0.86291 0.95814 1.44754 1.06319 1.08504 1.75271 1.19440 0.85579 0.96148 1.35769 0.89849 1.25678 1.02364 0.96242 1.01878 1.70204 1.33538 1.05651 1.50892 0.85129 0.79272 0.76671 0.78131 1.19914 1.22186 1.20497 1.21673 0.87983 0.93334 0.95419 1.21174 0.87147 0.91265 0.98757 1.23109 0.98251 0.90324 0.97173 0.92916 0.92268 0.91412 0.90761 0.91198 0.90346 0.95387 0.90109 0.85095 0.88799 0.87119 0.88107 0.92732 0.94116 0.90370 0.93930 0.90922 0.96914 0.98901 0.94527 0.93084 0.96727 0.89733 0.91622 0.92478 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.90 71.98 0.64 -0.93 16 2 C -0.10 -1.45 3.59 -9.91 -0.04 -1.49 16 3 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.12 -2.25 6.61 31.80 0.21 -2.04 16 5 C 0.03 0.82 5.30 86.65 0.46 1.28 16 6 N -0.52 -10.82 5.26 -887.55 -4.67 -15.49 16 7 C 0.03 0.60 3.86 85.56 0.33 0.93 16 8 C 0.51 13.19 7.41 87.66 0.65 13.84 16 9 O -0.57 -19.93 12.95 -3.02 -0.04 -19.97 16 10 N -0.61 -14.11 2.86 -820.15 -2.35 -16.45 16 11 C 0.11 1.63 6.32 86.37 0.55 2.18 16 12 C -0.13 -2.58 5.91 30.73 0.18 -2.39 16 13 C -0.09 -2.66 4.68 30.35 0.14 -2.51 16 14 C -0.07 -2.25 0.56 -51.74 -0.03 -2.28 16 15 C -0.11 -4.46 5.66 31.55 0.18 -4.28 16 16 C 0.20 10.15 5.01 86.76 0.44 10.59 16 17 N -0.62 -32.88 3.39 -691.86 -2.35 -35.23 16 18 C -0.24 -13.77 10.28 84.03 0.86 -12.91 16 19 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 20 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 21 N -0.95 -59.11 10.31 21.65 0.22 -58.89 16 22 Si 0.98 46.70 29.55 68.60 2.03 48.72 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 24 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 C 0.14 5.87 6.18 86.70 0.54 6.41 16 27 C 0.14 4.00 5.14 86.02 0.44 4.44 16 28 C 0.04 0.56 6.35 86.44 0.55 1.11 16 29 H 0.05 0.69 8.11 -2.39 -0.02 0.67 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.07 1.37 7.84 -2.39 -0.02 1.35 16 34 H 0.08 2.48 5.97 -2.39 -0.01 2.47 16 35 H 0.03 0.71 8.02 -2.39 -0.02 0.69 16 36 H 0.08 1.19 7.38 -2.38 -0.02 1.17 16 37 H 0.13 1.60 7.93 -2.39 -0.02 1.58 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.02 5.93 -2.39 -0.01 1.01 16 40 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 1.27 6.31 -2.39 -0.02 1.26 16 42 H 0.04 1.48 7.83 -2.39 -0.02 1.46 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.04 1.78 7.88 -2.39 -0.02 1.76 16 45 H 0.07 2.64 6.09 -2.39 -0.01 2.63 16 46 H 0.01 0.73 7.38 -2.38 -0.02 0.71 16 47 H -0.01 -0.44 7.50 -2.39 -0.02 -0.45 16 48 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 49 H 0.05 1.99 8.03 -2.39 -0.02 1.97 16 50 H 0.01 0.63 8.01 -2.39 -0.02 0.61 16 51 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 52 H 0.07 2.26 6.86 -2.39 -0.02 2.24 16 53 H 0.06 0.68 7.57 -2.39 -0.02 0.66 16 54 H 0.09 1.15 7.69 -2.38 -0.02 1.13 16 Total: -1.00 -75.07 396.52 0.27 -74.80 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.86 Total: 14.12 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 6.56 Total: 8.39 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -9.14 Total: -126.06 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.04 Total: -19.97 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -75.07 0.27 -74.80 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054197579.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.145 kcal (2) G-P(sol) polarization free energy of solvation -75.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds