Wall clock time and date at job start Tue Mar 31 2020 19:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.58633 * 2 1 4 4 C 1.53190 * 109.58898 * 239.71704 * 2 1 3 5 5 C 1.53034 * 109.31544 * 185.43198 * 4 2 1 6 6 C 1.53039 * 109.53686 * 61.36767 * 5 4 2 7 7 H 1.09004 * 109.49806 * 178.68426 * 6 5 4 8 8 N 1.46505 * 109.49592 * 58.58854 * 6 5 4 9 9 C 1.34773 * 119.99698 * 155.16581 * 8 6 5 10 10 O 1.21287 * 120.00170 * 359.97438 * 9 8 6 11 11 C 1.51494 * 119.99838 * 179.97438 * 9 8 6 12 12 C 1.52460 * 108.87844 * 299.29892 * 11 9 8 13 13 C 1.52164 * 112.62995 * 188.85304 * 12 11 9 14 14 C 1.52288 * 112.64188 * 45.13096 * 13 12 11 15 15 N 1.45865 * 112.33420 * 313.18928 * 14 13 12 16 16 C 1.45827 * 114.00560 * 289.41879 * 15 14 13 17 17 C 1.52253 * 112.36340 * 70.65387 * 16 15 14 18 18 C 1.52146 * 112.58392 * 46.93032 * 17 16 15 19 19 C 1.46501 * 111.97356 * 57.91899 * 15 14 13 20 20 C 1.53187 * 109.31401 * 298.63260 * 6 5 4 21 21 N 1.46925 * 109.70602 * 120.35649 * 2 1 3 22 22 C 1.36932 * 120.63225 * 353.49166 * 21 2 1 23 23 H 1.08006 * 119.99926 * 29.47592 * 22 21 2 24 24 C 1.38808 * 120.00260 * 209.48326 * 22 21 2 25 25 N 1.31618 * 120.00404 * 15.62720 * 24 22 21 26 26 Si 1.86805 * 120.00213 * 195.63131 * 24 22 21 27 27 H 1.48493 * 109.47558 * 94.39567 * 26 24 22 28 28 H 1.48501 * 109.46950 * 214.40042 * 26 24 22 29 29 H 1.48503 * 109.46816 * 334.39464 * 26 24 22 30 30 H 1.09004 * 109.47017 * 180.28315 * 1 2 3 31 31 H 1.08996 * 109.47158 * 300.27956 * 1 2 3 32 32 H 1.08995 * 109.47548 * 60.28216 * 1 2 3 33 33 H 1.09007 * 109.49520 * 65.47951 * 4 2 1 34 34 H 1.08997 * 109.52596 * 305.40862 * 4 2 1 35 35 H 1.09000 * 109.46364 * 301.34821 * 5 4 2 36 36 H 1.09004 * 109.45061 * 181.38352 * 5 4 2 37 37 H 0.96996 * 119.99939 * 335.15744 * 8 6 5 38 38 H 1.09734 * 109.02748 * 310.37692 * 12 11 9 39 39 H 1.09694 * 109.07062 * 67.44635 * 12 11 9 40 40 H 1.08730 * 111.00577 * 280.20296 * 13 12 11 41 41 H 1.10587 * 107.97103 * 164.06513 * 13 12 11 42 42 H 1.09625 * 109.11473 * 191.88296 * 14 13 12 43 43 H 1.09637 * 109.19123 * 74.46383 * 14 13 12 44 44 H 1.09637 * 109.26502 * 191.82296 * 16 15 14 45 45 H 1.09621 * 109.30620 * 309.33170 * 16 15 14 46 46 H 1.10549 * 107.95071 * 166.13338 * 17 16 15 47 47 H 1.08650 * 110.81570 * 282.08286 * 17 16 15 48 48 H 1.09670 * 109.25730 * 193.19621 * 18 17 16 49 49 H 1.09690 * 109.18872 * 75.87868 * 18 17 16 50 50 H 1.08889 * 109.88554 * 175.68631 * 19 15 14 51 51 H 1.08868 * 109.92723 * 54.68626 * 19 15 14 52 52 H 1.09001 * 109.59028 * 174.42107 * 20 6 5 53 53 H 1.09002 * 109.58487 * 294.84952 * 20 6 5 54 54 H 0.96996 * 120.00475 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5678 -0.8433 -1.1729 6 6 3.9604 -1.6607 0.0598 7 1 5.0450 -1.7624 0.0987 8 7 3.3466 -2.9887 -0.0184 9 6 3.9043 -4.0282 0.6336 10 8 4.9144 -3.8643 1.2846 11 6 3.2693 -5.4013 0.5532 12 6 1.8582 -5.3265 1.1254 13 6 1.2179 -6.6976 1.2856 14 6 2.1622 -7.7162 1.9099 15 7 3.4844 -7.6966 1.2943 16 6 3.5142 -8.2261 -0.0642 17 6 2.8264 -7.3033 -1.0608 18 6 3.2531 -5.8514 -0.9037 19 6 4.1108 -6.3752 1.3829 20 6 3.4686 -0.9436 1.3210 21 7 2.0254 -0.6990 1.1936 22 6 1.1586 -1.1152 2.1685 23 1 0.1433 -1.3792 1.9115 24 6 1.5847 -1.1978 3.4869 25 7 2.6963 -0.5988 3.8582 26 14 0.5804 -2.1593 4.7346 27 1 1.1096 -3.5431 4.8354 28 1 0.6721 -1.4965 6.0603 29 1 -0.8389 -2.2026 4.3000 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5181 0.8874 32 1 -0.3634 0.5094 -0.8924 33 1 1.7638 -0.1654 -2.1372 34 1 1.6050 -1.7245 -1.2928 35 1 4.0045 0.1529 -1.1022 36 1 3.9379 -1.3390 -2.0704 37 1 2.5390 -3.1198 -0.5392 38 1 1.8939 -4.8263 2.1015 39 1 1.2351 -4.7125 0.4635 40 1 0.8310 -7.0604 0.3364 41 1 0.3449 -6.5902 1.9558 42 1 1.7296 -8.7181 1.8052 43 1 2.2606 -7.5069 2.9816 44 1 4.5561 -8.3727 -0.3725 45 1 3.0222 -9.2055 -0.0823 46 1 3.1035 -7.6339 -2.0787 47 1 1.7462 -7.3991 -0.9939 48 1 2.5678 -5.2096 -1.4704 49 1 4.2553 -5.7219 -1.3305 50 1 5.1227 -6.4175 0.9831 51 1 4.1368 -6.0458 2.4203 52 1 3.6577 -1.5684 2.1939 53 1 3.9921 0.0064 1.4287 54 1 2.9942 -0.6568 4.7794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071606683.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:43 Heat of formation + Delta-G solvation = -43.454708 kcal Electronic energy + Delta-G solvation = -32874.921090 eV Core-core repulsion = 29038.249207 eV Total energy + Delta-G solvation = -3836.671883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.16052 -40.36772 -38.92755 -35.80650 -34.73691 -34.33096 -34.02634 -31.99976 -31.79107 -31.57609 -27.89982 -27.36533 -26.82362 -25.17361 -24.20444 -23.87399 -22.41945 -22.19103 -21.58725 -20.37460 -19.48606 -18.36240 -18.18873 -17.15472 -16.84932 -16.53769 -16.04176 -16.00162 -15.79515 -15.61350 -15.47444 -15.13537 -14.95535 -14.65744 -14.41009 -14.12600 -14.08925 -13.96066 -13.64365 -13.57691 -13.42292 -13.01562 -12.87072 -12.67497 -12.57761 -12.50562 -12.44142 -12.42128 -12.34746 -12.12170 -12.07919 -11.94790 -11.85984 -11.65895 -11.59153 -11.22435 -11.06127 -10.75313 -10.59794 -10.47935 -9.90693 -9.03313 -8.58054 -7.83054 -5.28025 1.36782 1.39480 1.46580 1.75820 2.35048 2.48170 3.03493 3.33046 3.55093 3.61337 3.62223 3.64048 3.96740 3.99943 4.05757 4.09306 4.13715 4.17834 4.21351 4.25718 4.39159 4.46693 4.48976 4.54277 4.63256 4.68788 4.75023 4.81222 4.84269 4.92370 4.95137 4.95978 5.02216 5.03649 5.05678 5.09323 5.09726 5.10443 5.10824 5.18027 5.25465 5.27745 5.31676 5.47419 5.55955 5.60453 5.69612 5.73463 5.76560 6.12604 6.40152 6.43194 6.71522 7.17809 7.41477 7.92405 8.43539 9.22227 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.011354 B = 0.005370 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.556571 B = 5212.968548 C = 6324.405393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 H 0.012 0.988 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.126 3.874 7 H 0.060 0.940 8 N -0.686 5.686 9 C 0.514 3.486 10 O -0.594 6.594 11 C -0.090 4.090 12 C -0.094 4.094 13 C -0.143 4.143 14 C 0.064 3.936 15 N -0.551 5.551 16 C 0.062 3.938 17 C -0.145 4.145 18 C -0.094 4.094 19 C 0.098 3.902 20 C 0.174 3.826 21 N -0.592 5.592 22 C -0.229 4.229 23 H 0.076 0.924 24 C -0.053 4.053 25 N -0.938 5.938 26 Si 0.943 3.057 27 H -0.297 1.297 28 H -0.302 1.302 29 H -0.258 1.258 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.404 0.596 38 H 0.022 0.978 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.072 0.928 51 H 0.044 0.956 52 H 0.044 0.956 53 H -0.008 1.008 54 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 -13.401 -16.269 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.029 0.971 4 C -0.156 4.156 5 C -0.147 4.147 6 C 0.020 3.980 7 H 0.078 0.922 8 N -0.336 5.336 9 C 0.301 3.699 10 O -0.475 6.475 11 C -0.095 4.095 12 C -0.132 4.132 13 C -0.182 4.182 14 C -0.064 4.064 15 N -0.272 5.272 16 C -0.065 4.065 17 C -0.184 4.184 18 C -0.131 4.131 19 C -0.031 4.031 20 C 0.047 3.953 21 N -0.315 5.315 22 C -0.360 4.360 23 H 0.094 0.906 24 C -0.248 4.248 25 N -0.585 5.585 26 Si 0.773 3.227 27 H -0.225 1.225 28 H -0.230 1.230 29 H -0.182 1.182 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.241 0.759 38 H 0.041 0.959 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.063 0.937 52 H 0.063 0.937 53 H 0.010 0.990 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.692 -13.563 -15.420 20.712 hybrid contribution -0.697 0.938 1.309 1.755 sum -3.389 -12.625 -14.111 19.235 Atomic orbital electron populations 1.21711 0.94604 1.01367 1.00784 1.20769 0.94192 0.93139 0.87083 0.97071 1.21940 0.94586 1.01016 0.98076 1.21652 0.97366 0.99772 0.95957 1.21457 0.96129 0.82888 0.97543 0.92208 1.45732 1.29458 1.07635 1.50787 1.21277 0.83669 0.87317 0.77685 1.90643 1.27939 1.85993 1.42946 1.21182 0.97041 0.91429 0.99897 1.21197 0.93611 0.98537 0.99883 1.21969 0.98895 0.93983 1.03361 1.21842 0.86993 0.99747 0.97785 1.60239 1.21804 1.23411 1.21704 1.21900 1.01678 0.97952 0.84962 1.21937 1.01971 0.93231 1.01277 1.21264 1.02476 0.98219 0.91189 1.21520 0.96772 0.86615 0.98190 1.20806 0.84279 0.95016 0.95199 1.44221 1.02042 1.65394 1.19880 1.19372 0.95213 1.35147 0.86235 0.90605 1.25695 0.98887 1.01305 0.98925 1.70162 1.25984 1.46186 1.16156 0.85590 0.79625 0.78234 0.79235 1.22507 1.22981 1.18232 0.92910 0.94754 0.90582 0.89154 0.91873 0.91127 0.89631 0.75876 0.95873 0.90956 0.88700 0.91825 0.88122 0.92980 0.90961 0.88703 0.89605 0.90229 0.90453 0.92165 0.90920 0.93687 0.93735 0.98999 0.95010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 7.95 71.98 0.57 -3.63 16 2 C 0.15 5.71 3.49 44.97 0.16 5.86 16 3 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 4 C -0.12 -3.22 5.20 30.67 0.16 -3.06 16 5 C -0.11 -3.15 5.58 30.62 0.17 -2.98 16 6 C 0.13 4.85 2.81 45.07 0.13 4.98 16 7 H 0.06 2.47 7.58 -2.38 -0.02 2.45 16 8 N -0.69 -23.92 4.72 -441.25 -2.08 -26.01 16 9 C 0.51 19.69 6.32 87.91 0.56 20.25 16 10 O -0.59 -28.52 15.59 -3.05 -0.05 -28.56 16 11 C -0.09 -2.66 0.57 -52.98 -0.03 -2.69 16 12 C -0.09 -2.80 4.51 30.14 0.14 -2.66 16 13 C -0.14 -3.18 5.12 30.08 0.15 -3.03 16 14 C 0.06 1.43 5.77 86.26 0.50 1.93 16 15 N -0.55 -13.23 4.79 -902.26 -4.32 -17.55 16 16 C 0.06 1.07 5.77 86.26 0.50 1.57 16 17 C -0.15 -2.20 5.13 30.07 0.15 -2.05 16 18 C -0.09 -1.95 4.51 30.14 0.14 -1.81 16 19 C 0.10 3.06 4.18 86.42 0.36 3.42 16 20 C 0.17 8.70 4.89 86.36 0.42 9.12 16 21 N -0.59 -28.04 2.91 -675.23 -1.96 -30.00 16 22 C -0.23 -12.05 8.60 84.03 0.72 -11.33 16 23 H 0.08 3.81 6.23 -2.91 -0.02 3.80 16 24 C -0.05 -3.06 4.94 84.86 0.42 -2.64 16 25 N -0.94 -58.59 11.21 21.65 0.24 -58.35 16 26 Si 0.94 46.66 29.58 68.60 2.03 48.69 16 27 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 28 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 29 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 30 H 0.05 1.72 7.41 -2.38 -0.02 1.70 16 31 H 0.03 1.29 7.67 -2.39 -0.02 1.28 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.06 1.65 6.40 -2.39 -0.02 1.64 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.40 12.04 5.88 -92.71 -0.54 11.49 16 38 H 0.02 0.90 8.14 -2.00 -0.02 0.88 16 39 H 0.07 2.02 7.81 -2.02 -0.02 2.00 16 40 H 0.09 1.60 5.70 -2.53 -0.01 1.59 16 41 H 0.06 1.42 8.27 -1.53 -0.01 1.41 16 42 H 0.10 1.66 8.11 -2.05 -0.02 1.65 16 43 H 0.05 1.36 8.20 -2.05 -0.02 1.34 16 44 H 0.07 1.24 8.20 -2.05 -0.02 1.22 16 45 H 0.09 1.23 8.11 -2.06 -0.02 1.21 16 46 H 0.09 0.96 8.27 -1.55 -0.01 0.95 16 47 H 0.08 1.07 5.68 -2.57 -0.01 1.06 16 48 H 0.08 1.41 7.80 -2.03 -0.02 1.40 16 49 H 0.06 1.31 8.14 -2.02 -0.02 1.29 16 50 H 0.07 2.34 8.08 -2.45 -0.02 2.32 16 51 H 0.04 1.72 8.07 -2.46 -0.02 1.70 16 52 H 0.04 2.69 6.12 -2.39 -0.01 2.68 16 53 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 54 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -72.90 388.48 -0.57 -73.47 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.36 Total: 27.09 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 5.21 Total: 11.24 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -8.12 Total: -131.91 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.05 Total: -28.56 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -72.90 -0.57 -73.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071606683.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.016 kcal (2) G-P(sol) polarization free energy of solvation -72.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds