Wall clock time and date at job start Tue Mar 31 2020 19:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46911 * 2 1 4 4 C 1.50702 * 109.47216 * 120.00009 * 2 1 3 5 5 O 1.21278 * 119.99894 * 265.00031 * 4 2 1 6 6 N 1.34773 * 120.00152 * 85.00059 * 4 2 1 7 7 C 1.47889 * 134.34390 * 179.97438 * 6 4 2 8 8 C 1.52374 * 85.59061 * 156.53535 * 7 6 4 9 9 C 1.47894 * 134.34100 * 0.03115 * 6 4 2 10 10 C 1.53656 * 116.38986 * 141.35925 * 8 7 6 11 11 C 1.54597 * 102.73161 * 95.48609 * 10 8 7 12 12 N 1.47136 * 107.36670 * 20.75459 * 11 10 8 13 13 C 1.36938 * 125.58996 * 180.66450 * 12 11 10 14 14 H 1.08002 * 119.99889 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00054 * 0.02562 * 13 12 11 16 16 N 1.31624 * 119.99551 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00171 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47171 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.46953 * 120.00353 * 17 15 13 20 20 H 1.48502 * 109.46971 * 240.00169 * 17 15 13 21 21 C 1.47729 * 108.82430 * 0.92790 * 12 11 10 22 22 N 1.46895 * 109.46946 * 240.00173 * 2 1 3 23 23 C 1.46852 * 111.00037 * 184.20813 * 22 2 1 24 24 C 1.53039 * 109.52608 * 174.15932 * 23 22 2 25 25 C 1.53116 * 109.27388 * 59.17870 * 24 23 22 26 26 C 1.53119 * 109.16283 * 302.34217 * 25 24 23 27 27 C 1.46845 * 111.00470 * 59.99616 * 22 2 1 28 28 H 1.09003 * 109.47219 * 299.99595 * 1 2 3 29 29 H 1.08997 * 109.46931 * 60.00291 * 1 2 3 30 30 H 1.09007 * 109.46586 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47375 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47140 * 300.00141 * 3 2 1 33 33 H 1.08999 * 109.47304 * 59.99966 * 3 2 1 34 34 H 1.09000 * 113.85076 * 42.36954 * 7 6 4 35 35 H 1.09001 * 113.85367 * 270.70197 * 7 6 4 36 36 H 1.08995 * 113.85635 * 89.29666 * 9 6 4 37 37 H 1.09003 * 113.85124 * 317.62981 * 9 6 4 38 38 H 1.08999 * 110.75504 * 337.17811 * 10 8 7 39 39 H 1.09002 * 110.76044 * 213.79507 * 10 8 7 40 40 H 1.09005 * 109.86535 * 261.31083 * 11 10 8 41 41 H 1.08999 * 109.98373 * 140.26332 * 11 10 8 42 42 H 0.97006 * 119.99721 * 180.02562 * 16 15 13 43 43 H 1.09007 * 110.39933 * 96.33789 * 21 12 11 44 44 H 1.08995 * 110.40116 * 218.74649 * 21 12 11 45 45 H 1.08996 * 109.45771 * 294.17890 * 23 22 2 46 46 H 1.08996 * 109.45820 * 54.14157 * 23 22 2 47 47 H 1.09004 * 109.49951 * 299.23863 * 24 23 22 48 48 H 1.08998 * 109.50099 * 179.11863 * 24 23 22 49 49 H 1.09006 * 109.51719 * 182.43909 * 25 24 23 50 50 H 1.08999 * 109.57897 * 62.28851 * 25 24 23 51 51 H 1.09000 * 109.50497 * 297.71389 * 26 25 24 52 52 H 1.09002 * 109.50208 * 177.59933 * 26 25 24 53 53 H 1.08998 * 109.46140 * 305.85431 * 27 22 2 54 54 H 1.09001 * 109.46023 * 65.82462 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3208 -0.0749 2.2223 6 7 2.1612 -2.0520 1.2287 7 6 2.6091 -3.0487 2.2252 8 6 1.7792 -4.0463 1.4265 9 6 1.9116 -3.1130 0.2291 10 6 2.3734 -5.4540 1.2642 11 6 1.7011 -6.2420 2.4119 12 7 0.4860 -5.5068 2.7966 13 6 -0.3850 -5.8705 3.7886 14 1 -1.2528 -5.2616 3.9953 15 6 -0.1527 -7.0217 4.5285 16 7 0.9051 -7.7634 4.2769 17 14 -1.3406 -7.5175 5.8823 18 1 -2.4396 -6.5223 5.9655 19 1 -1.9064 -8.8564 5.5784 20 1 -0.6196 -7.5676 7.1796 21 6 0.3564 -4.3153 1.9329 22 7 2.0197 -0.6924 -1.1994 23 6 3.4842 -0.7998 -1.1842 24 6 3.9471 -1.6500 -2.3695 25 6 3.4780 -0.9979 -3.6730 26 6 1.9539 -0.8537 -3.6428 27 6 1.5488 -0.0267 -2.4206 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 2.2314 -2.8666 3.2313 35 1 3.6807 -3.2466 2.1997 36 1 2.7700 -3.3306 -0.4065 37 1 0.9863 -2.9814 -0.3318 38 1 3.4557 -5.4335 1.3919 39 1 2.1053 -5.8773 0.2962 40 1 2.3792 -6.3079 3.2628 41 1 1.4361 -7.2429 2.0712 42 1 1.0673 -8.5682 4.7938 43 1 -0.3116 -4.5229 1.0969 44 1 -0.0085 -3.4657 2.5099 45 1 3.9220 0.1956 -1.2582 46 1 3.8042 -1.2688 -0.2538 47 1 3.5206 -2.6499 -2.2886 48 1 5.0351 -1.7164 -2.3667 49 1 3.7682 -1.6227 -4.5178 50 1 3.9351 -0.0136 -3.7741 51 1 1.4961 -1.8411 -3.5821 52 1 1.6179 -0.3513 -4.5499 53 1 0.4632 0.0658 -2.3883 54 1 1.9958 0.9651 -2.4889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072735474.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:41 Heat of formation + Delta-G solvation = 16.577524 kcal Electronic energy + Delta-G solvation = -31825.153247 eV Core-core repulsion = 27991.084558 eV Total energy + Delta-G solvation = -3834.068690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.16673 -40.61471 -39.10797 -37.23030 -35.90795 -34.08356 -31.95321 -31.38707 -31.19441 -29.86932 -28.41630 -27.67175 -27.22215 -25.75585 -25.00258 -23.94282 -22.63650 -22.03760 -20.52949 -19.75850 -19.40319 -18.82408 -18.21338 -17.19049 -16.92390 -16.67278 -16.18353 -15.96259 -15.65977 -15.52309 -15.40937 -15.13955 -14.81564 -14.50662 -14.34363 -14.14221 -14.10867 -13.69960 -13.59443 -13.49663 -13.32130 -13.14898 -12.99611 -12.89802 -12.82052 -12.77488 -12.64428 -12.40551 -12.34423 -11.98625 -11.91883 -11.86733 -11.68775 -11.64894 -11.49120 -11.26141 -11.22473 -11.09846 -10.68783 -10.56727 -9.62716 -9.27046 -8.85865 -7.83474 -5.17779 1.45206 1.46110 1.56115 1.56715 1.85790 2.49650 2.76964 3.28814 3.33853 3.48355 3.69693 3.75285 3.87259 3.93515 3.97347 4.07693 4.15607 4.20383 4.25496 4.39314 4.43882 4.46550 4.53349 4.62664 4.63970 4.67211 4.69159 4.72606 4.74154 4.78409 4.81565 4.85837 4.91672 4.99105 4.99362 5.03977 5.11177 5.12187 5.13579 5.18798 5.20489 5.24161 5.28491 5.37576 5.41702 5.46934 5.59849 5.75240 5.83506 5.98696 6.15052 6.23112 6.78266 7.13515 7.13850 7.80428 8.44009 9.26440 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.003156 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.504221 B = 8870.465671 C = 9456.562634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.104 3.896 3 C -0.160 4.160 4 C 0.539 3.461 5 O -0.599 6.599 6 N -0.624 5.624 7 C 0.120 3.880 8 C -0.102 4.102 9 C 0.164 3.836 10 C -0.110 4.110 11 C 0.185 3.815 12 N -0.627 5.627 13 C -0.240 4.240 14 H 0.075 0.925 15 C -0.063 4.063 16 N -0.947 5.947 17 Si 0.974 3.026 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.294 1.294 21 C 0.163 3.837 22 N -0.516 5.516 23 C 0.047 3.953 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.111 4.111 27 C 0.048 3.952 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.006 0.994 41 H 0.009 0.991 42 H 0.246 0.754 43 H 0.036 0.964 44 H 0.021 0.979 45 H 0.030 0.970 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.056 0.944 51 H 0.071 0.929 52 H 0.079 0.921 53 H 0.089 0.911 54 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 15.832 -21.284 26.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 C -0.219 4.219 4 C 0.330 3.670 5 O -0.480 6.480 6 N -0.356 5.356 7 C -0.002 4.002 8 C -0.103 4.103 9 C 0.042 3.958 10 C -0.149 4.149 11 C 0.060 3.940 12 N -0.353 5.353 13 C -0.369 4.369 14 H 0.093 0.907 15 C -0.257 4.257 16 N -0.597 5.597 17 Si 0.802 3.198 18 H -0.194 1.194 19 H -0.216 1.216 20 H -0.221 1.221 21 C 0.038 3.962 22 N -0.242 5.242 23 C -0.081 4.081 24 C -0.149 4.149 25 C -0.156 4.156 26 C -0.149 4.149 27 C -0.078 4.078 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.025 0.975 41 H 0.027 0.973 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.040 0.960 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.075 0.925 51 H 0.089 0.911 52 H 0.098 0.902 53 H 0.107 0.893 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.790 15.750 -20.617 26.383 hybrid contribution -0.107 0.240 1.750 1.769 sum 4.683 15.990 -18.868 25.171 Atomic orbital electron populations 1.21846 0.90506 1.03406 1.03386 1.21106 0.97688 0.92273 0.87784 1.22213 1.01091 0.95270 1.03327 1.20674 0.76462 0.80559 0.89348 1.90668 1.53684 1.66254 1.37425 1.50186 1.63685 1.04033 1.17734 1.22944 0.99511 0.84345 0.93408 1.22404 0.95980 0.94621 0.97338 1.22957 1.03279 0.78932 0.90627 1.22497 1.00151 0.93023 0.99196 1.20982 0.86655 0.92918 0.93457 1.44868 1.26376 1.25775 1.38326 1.19421 1.03006 1.05768 1.08740 0.90679 1.25568 0.99926 0.97942 1.02227 1.70188 1.29235 1.16781 1.43451 0.85077 0.78294 0.77746 0.78636 1.19394 1.21585 1.22115 1.21125 0.93936 0.88374 0.92769 1.62252 1.10380 1.50748 1.00810 1.22217 0.87293 0.98968 0.99607 1.21577 1.00499 0.99503 0.93289 1.21557 0.96070 1.00645 0.97287 1.21563 0.95769 1.00991 0.96574 1.22312 1.01184 0.95766 0.88587 0.92767 0.88502 0.91602 0.93227 0.89167 0.92498 0.93522 0.88243 0.87096 0.88370 0.89455 0.89272 0.97532 0.97311 0.94464 0.94595 0.96016 0.95128 0.92544 0.90606 0.91179 0.90916 0.92540 0.91053 0.90247 0.89290 0.94243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.23 71.98 0.59 -1.97 16 2 C 0.10 2.24 0.57 2.78 0.00 2.24 16 3 C -0.16 -3.25 7.32 71.98 0.53 -2.73 16 4 C 0.54 16.54 5.58 87.66 0.49 17.03 16 5 O -0.60 -23.84 16.82 -3.02 -0.05 -23.89 16 6 N -0.62 -17.93 2.80 -863.56 -2.42 -20.35 16 7 C 0.12 3.94 8.14 85.91 0.70 4.64 16 8 C -0.10 -3.18 0.99 -52.15 -0.05 -3.23 16 9 C 0.16 3.76 5.81 85.91 0.50 4.25 16 10 C -0.11 -3.57 6.36 31.36 0.20 -3.37 16 11 C 0.18 8.86 5.39 86.80 0.47 9.33 16 12 N -0.63 -32.22 3.41 -693.33 -2.36 -34.58 16 13 C -0.24 -13.74 10.28 84.03 0.86 -12.88 16 14 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 15 C -0.06 -3.67 5.49 84.86 0.47 -3.21 16 16 N -0.95 -57.25 10.30 21.65 0.22 -57.03 16 17 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 21 C 0.16 6.57 6.63 86.28 0.57 7.15 16 22 N -0.52 -8.52 2.88 -851.09 -2.45 -10.98 16 23 C 0.05 0.81 3.79 86.33 0.33 1.14 16 24 C -0.11 -1.41 6.04 30.65 0.19 -1.23 16 25 C -0.12 -1.21 6.00 30.67 0.18 -1.02 16 26 C -0.11 -1.09 6.09 30.64 0.19 -0.90 16 27 C 0.05 0.58 4.64 86.32 0.40 0.98 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.28 6.28 -2.39 -0.01 1.26 16 30 H 0.06 1.36 8.13 -2.38 -0.02 1.34 16 31 H 0.05 1.09 6.63 -2.39 -0.02 1.07 16 32 H 0.09 1.33 6.54 -2.39 -0.02 1.31 16 33 H 0.06 1.35 7.87 -2.39 -0.02 1.33 16 34 H 0.05 1.86 8.12 -2.39 -0.02 1.84 16 35 H 0.10 2.86 8.04 -2.39 -0.02 2.84 16 36 H 0.11 2.02 6.58 -2.39 -0.02 2.01 16 37 H 0.10 2.10 8.04 -2.39 -0.02 2.08 16 38 H 0.09 2.44 7.99 -2.39 -0.02 2.42 16 39 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.01 0.35 7.40 -2.38 -0.02 0.33 16 41 H 0.01 0.47 7.47 -2.39 -0.02 0.45 16 42 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 43 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.02 0.94 8.07 -2.39 -0.02 0.92 16 45 H 0.03 0.55 6.71 -2.39 -0.02 0.54 16 46 H 0.06 1.23 5.73 -2.39 -0.01 1.22 16 47 H 0.08 0.97 7.18 -2.38 -0.02 0.96 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 50 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 53 H 0.09 0.94 6.01 -2.39 -0.01 0.92 16 54 H 0.04 0.47 6.63 -2.39 -0.02 0.45 16 Total: -1.00 -72.83 395.13 2.44 -70.39 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.86 Total: 11.43 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 6.61 Total: 16.22 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -7.01 Total: -122.93 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.89 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -72.83 2.44 -70.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072735474.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.968 kcal (2) G-P(sol) polarization free energy of solvation -72.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds