Wall clock time and date at job start Tue Mar 31 2020 18:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47660 * 2 1 4 4 C 1.53005 * 109.46973 * 119.99836 * 2 1 3 5 5 N 1.46902 * 109.46929 * 64.99818 * 4 2 1 6 6 C 1.47847 * 111.00006 * 69.15717 * 5 4 2 7 7 C 1.54907 * 104.79464 * 146.36018 * 6 5 4 8 8 C 1.55137 * 101.65568 * 322.93193 * 7 6 5 9 9 H 1.08994 * 110.85486 * 277.19983 * 8 7 6 10 10 C 1.50706 * 110.70671 * 154.03157 * 8 7 6 11 11 O 1.21274 * 120.00042 * 246.12434 * 10 8 7 12 12 N 1.34777 * 119.99766 * 66.39970 * 10 8 7 13 13 C 1.47397 * 135.85200 * 359.63905 * 12 10 8 14 14 C 1.52076 * 87.40872 * 154.38034 * 13 12 10 15 15 C 1.47394 * 135.85493 * 179.97438 * 12 10 8 16 16 C 1.53509 * 117.21212 * 267.27682 * 14 13 12 17 17 C 1.54634 * 102.70293 * 262.93313 * 16 14 13 18 18 N 1.47149 * 107.37452 * 339.38114 * 17 16 14 19 19 C 1.36941 * 125.57904 * 179.13175 * 18 17 16 20 20 H 1.07998 * 119.99888 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99779 * 359.97438 * 19 18 17 22 22 N 1.31616 * 120.00546 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99860 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47061 * 90.00000 * 23 21 19 25 25 H 1.48498 * 109.47316 * 209.99957 * 23 21 19 26 26 H 1.48506 * 109.47198 * 330.00191 * 23 21 19 27 27 C 1.47755 * 108.84343 * 359.09345 * 18 17 16 28 28 C 1.47442 * 111.00014 * 189.99896 * 5 4 2 29 29 H 1.08998 * 109.47167 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47119 * 300.00325 * 1 2 3 31 31 H 1.09000 * 109.46956 * 59.99971 * 1 2 3 32 32 H 1.09007 * 109.47376 * 239.99542 * 2 1 3 33 33 H 1.08997 * 109.47242 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46959 * 300.00027 * 3 2 1 35 35 H 1.09000 * 109.46626 * 59.99844 * 3 2 1 36 36 H 1.08995 * 109.47042 * 305.00182 * 4 2 1 37 37 H 1.08995 * 109.47375 * 184.99536 * 4 2 1 38 38 H 1.08991 * 110.37588 * 265.19044 * 6 5 4 39 39 H 1.09001 * 110.37520 * 27.42441 * 6 5 4 40 40 H 1.08995 * 110.99266 * 204.83797 * 7 6 5 41 41 H 1.09010 * 110.98748 * 81.02511 * 7 6 5 42 42 H 1.08998 * 113.54177 * 268.99063 * 13 12 10 43 43 H 1.09000 * 113.54646 * 39.67113 * 13 12 10 44 44 H 1.08995 * 113.54232 * 320.33789 * 15 12 10 45 45 H 1.09002 * 113.53505 * 91.01167 * 15 12 10 46 46 H 1.09002 * 110.76725 * 21.23333 * 16 14 13 47 47 H 1.09001 * 110.76573 * 144.62848 * 16 14 13 48 48 H 1.09000 * 109.86760 * 98.83297 * 17 16 14 49 49 H 1.08997 * 109.86351 * 219.80531 * 17 16 14 50 50 H 0.96996 * 120.00227 * 180.02562 * 22 21 19 51 51 H 1.09000 * 110.40307 * 263.50192 * 27 18 17 52 52 H 1.09002 * 110.40803 * 141.07376 * 27 18 17 53 53 H 1.08998 * 109.88763 * 117.33551 * 28 5 4 54 54 H 1.08999 * 109.88885 * 356.15255 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 -2.1367 1.1905 6 6 2.3937 -2.8463 0.1270 7 6 2.5975 -4.2803 0.6761 8 6 2.8431 -4.0068 2.1833 9 1 3.8840 -3.7392 2.3645 10 6 2.4501 -5.2021 3.0128 11 8 1.5150 -5.1259 3.7813 12 7 3.1412 -6.3541 2.9045 13 6 4.2927 -6.8264 2.1148 14 6 4.5527 -7.8333 3.2245 15 6 3.0708 -7.6916 3.5199 16 6 5.5273 -7.4176 4.3353 17 6 6.8573 -8.0611 3.8790 18 7 6.5225 -9.1426 2.9390 19 6 7.4249 -9.9468 2.2955 20 1 7.0781 -10.7164 1.6219 21 6 8.7854 -9.7727 2.5091 22 7 9.2081 -8.8344 3.3296 23 14 10.0165 -10.8702 1.6318 24 1 10.3936 -10.2529 0.3348 25 1 11.2282 -11.0282 2.4756 26 1 9.4064 -12.2018 1.3874 27 6 5.0531 -9.2195 2.8038 28 6 1.9133 -2.8104 2.4755 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6053 -0.2617 2.1370 37 1 3.1262 -0.6444 1.2952 38 1 1.8086 -2.8715 -0.7922 39 1 3.3559 -2.3655 -0.0496 40 1 3.4661 -4.7539 0.2186 41 1 1.7026 -4.8853 0.5298 42 1 4.0116 -7.2858 1.1672 43 1 5.0814 -6.0819 2.0067 44 1 2.8393 -7.6692 4.5847 45 1 2.4473 -8.3934 2.9658 46 1 5.6193 -6.3325 4.3826 47 1 5.2122 -7.8221 5.2972 48 1 7.4776 -7.3161 3.3808 49 1 7.3869 -8.4675 4.7407 50 1 10.1588 -8.7126 3.4785 51 1 4.6502 -9.9860 3.4658 52 1 4.7769 -9.4256 1.7697 53 1 0.9768 -3.1651 2.9059 54 1 2.4020 -2.1203 3.1632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072811722.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:13 Heat of formation + Delta-G solvation = 9.253450 kcal Electronic energy + Delta-G solvation = -29842.217904 eV Core-core repulsion = 26007.831619 eV Total energy + Delta-G solvation = -3834.386285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.02940 -40.59455 -39.10601 -37.30470 -36.44614 -34.10152 -32.55345 -31.13033 -30.34279 -29.92710 -27.91566 -27.56901 -27.17565 -26.32267 -25.36754 -22.99971 -22.26885 -22.09178 -20.65678 -20.28450 -19.65924 -18.58036 -18.27748 -17.35454 -17.04452 -16.70997 -16.62290 -16.13815 -15.94770 -15.65872 -15.46194 -14.98175 -14.64691 -14.55199 -14.33033 -14.14691 -13.99818 -13.73460 -13.69979 -13.35286 -13.28717 -13.13886 -12.95569 -12.86423 -12.75741 -12.69765 -12.47767 -12.25987 -12.23926 -12.02013 -11.91362 -11.85849 -11.80997 -11.78256 -11.65330 -11.57898 -11.36898 -11.21574 -10.78857 -10.66097 -9.74065 -9.28399 -8.84524 -7.80722 -5.15293 1.49802 1.50738 1.54050 1.59236 1.76699 2.52933 2.92354 3.23683 3.34945 3.42747 3.46509 3.60175 3.71614 3.84138 3.95148 4.01596 4.07901 4.13142 4.22256 4.29077 4.33076 4.33981 4.44205 4.53113 4.55871 4.62309 4.67444 4.70169 4.72811 4.74124 4.84841 4.85990 4.86688 4.88179 4.94541 4.95990 5.03834 5.04557 5.10021 5.15349 5.17168 5.18222 5.21255 5.30156 5.47692 5.51612 5.54017 5.68373 5.81026 5.95494 6.11583 6.23220 6.69564 7.06748 7.14496 7.82048 8.46195 9.29719 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.002276 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.980435 B =12299.187332 C =13176.646187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.145 4.145 4 C 0.054 3.946 5 N -0.533 5.533 6 C 0.047 3.953 7 C -0.109 4.109 8 C -0.121 4.121 9 H 0.109 0.891 10 C 0.550 3.450 11 O -0.584 6.584 12 N -0.639 5.639 13 C 0.129 3.871 14 C -0.100 4.100 15 C 0.124 3.876 16 C -0.103 4.103 17 C 0.191 3.809 18 N -0.625 5.625 19 C -0.233 4.233 20 H 0.087 0.913 21 C -0.068 4.068 22 N -0.953 5.953 23 Si 0.975 3.025 24 H -0.286 1.286 25 H -0.300 1.300 26 H -0.269 1.269 27 C 0.152 3.848 28 C 0.062 3.938 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.107 0.893 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.013 0.987 49 H 0.002 0.998 50 H 0.244 0.756 51 H 0.032 0.968 52 H 0.059 0.941 53 H 0.073 0.927 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.312 15.676 -7.625 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.074 4.074 5 N -0.257 5.257 6 C -0.081 4.081 7 C -0.147 4.147 8 C -0.143 4.143 9 H 0.127 0.873 10 C 0.341 3.659 11 O -0.465 6.465 12 N -0.373 5.373 13 C 0.007 3.993 14 C -0.102 4.102 15 C 0.001 3.999 16 C -0.141 4.141 17 C 0.065 3.935 18 N -0.351 5.351 19 C -0.362 4.362 20 H 0.105 0.895 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.804 3.196 24 H -0.213 1.213 25 H -0.227 1.227 26 H -0.194 1.194 27 C 0.026 3.974 28 C -0.066 4.066 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.125 0.875 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.032 0.968 49 H 0.021 0.979 50 H 0.054 0.946 51 H 0.050 0.950 52 H 0.077 0.923 53 H 0.092 0.908 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.255 15.888 -7.322 23.880 hybrid contribution 2.005 -0.634 0.317 2.127 sum -14.249 15.254 -7.005 22.018 Atomic orbital electron populations 1.21678 0.94737 1.01739 1.01070 1.21077 0.96572 0.95957 0.97178 1.21805 1.00958 0.95258 1.02267 1.22463 0.97959 0.87740 0.99264 1.63632 1.55890 1.02628 1.03531 1.23093 0.97250 0.92155 0.95562 1.22666 1.03043 0.97998 0.91010 1.22443 1.02062 0.93024 0.96818 0.87298 1.20269 0.80343 0.83175 0.82136 1.90660 1.30778 1.84040 1.40995 1.49812 1.33236 1.10701 1.43536 1.22910 0.86142 0.94725 0.95504 1.21997 0.94361 0.96676 0.97128 1.22786 0.94606 0.82572 0.99933 1.22256 0.94685 1.00010 0.97124 1.20901 0.92099 0.89147 0.91308 1.44825 1.01222 1.38001 1.51086 1.19460 0.87040 1.10445 1.19276 0.89542 1.25605 0.98806 1.00660 1.01042 1.70178 1.13163 1.35986 1.40929 0.85128 0.78381 0.78750 0.77376 1.21267 1.22717 1.19364 1.21305 0.83425 0.93453 0.99186 1.22621 0.98782 0.93335 0.91865 0.92825 0.93370 0.92689 0.91201 0.92619 0.91853 0.92576 0.91103 0.94404 0.89076 0.92289 0.88614 0.91054 0.87348 0.90226 0.90724 0.87495 0.91166 0.91116 0.96830 0.97926 0.94626 0.95015 0.92307 0.90849 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.08 71.98 0.65 -1.25 16 2 C -0.09 -1.18 2.91 -10.79 -0.03 -1.21 16 3 C -0.15 -1.59 9.19 71.98 0.66 -0.93 16 4 C 0.05 0.84 3.95 86.30 0.34 1.18 16 5 N -0.53 -9.86 4.62 -885.55 -4.09 -13.95 16 6 C 0.05 0.73 5.72 86.77 0.50 1.23 16 7 C -0.11 -1.89 6.41 31.98 0.20 -1.69 16 8 C -0.12 -2.60 3.16 -10.36 -0.03 -2.63 16 9 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 10 C 0.55 15.38 7.38 87.66 0.65 16.02 16 11 O -0.58 -20.69 16.19 -3.01 -0.05 -20.73 16 12 N -0.64 -16.54 3.70 -859.81 -3.18 -19.72 16 13 C 0.13 3.19 7.68 83.77 0.64 3.83 16 14 C -0.10 -2.93 1.06 -52.63 -0.06 -2.98 16 15 C 0.12 3.12 8.02 83.67 0.67 3.79 16 16 C -0.10 -3.55 6.40 31.32 0.20 -3.35 16 17 C 0.19 8.95 5.39 86.81 0.47 9.41 16 18 N -0.62 -29.75 3.41 -693.43 -2.36 -32.11 16 19 C -0.23 -12.32 10.28 84.03 0.86 -11.46 16 20 H 0.09 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 22 N -0.95 -55.95 10.30 21.65 0.22 -55.73 16 23 Si 0.97 44.36 29.55 68.60 2.03 46.39 16 24 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 27 C 0.15 5.35 6.70 86.23 0.58 5.93 16 28 C 0.06 1.36 6.29 86.65 0.54 1.91 16 29 H 0.05 0.91 7.75 -2.39 -0.02 0.89 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.93 7.34 -2.38 -0.02 0.91 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 1.14 8.03 -2.39 -0.02 1.13 16 37 H 0.04 0.58 7.85 -2.39 -0.02 0.56 16 38 H 0.09 1.29 8.12 -2.39 -0.02 1.27 16 39 H 0.06 0.83 7.62 -2.39 -0.02 0.82 16 40 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.38 8.04 -2.38 -0.02 1.36 16 42 H 0.11 2.28 8.06 -2.39 -0.02 2.26 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 45 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 47 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.01 0.71 7.39 -2.39 -0.02 0.69 16 49 H 0.00 0.14 7.49 -2.39 -0.02 0.12 16 50 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 51 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.06 1.90 8.00 -2.39 -0.02 1.88 16 53 H 0.07 2.00 6.81 -2.39 -0.02 1.99 16 54 H 0.06 1.26 7.55 -2.39 -0.02 1.24 16 Total: -1.00 -67.04 416.16 0.73 -66.31 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.84 Total: 15.04 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 7.32 Total: 14.50 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -9.41 Total: -121.50 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -67.04 0.73 -66.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072811722.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.567 kcal (2) G-P(sol) polarization free energy of solvation -67.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds