Wall clock time and date at job start Tue Mar 31 2020 18:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46810 * 2 1 4 4 C 1.53001 * 109.46997 * 119.99857 * 2 1 3 5 5 N 1.46897 * 109.47129 * 65.00217 * 4 2 1 6 6 C 1.47841 * 111.00298 * 56.89113 * 5 4 2 7 7 C 1.54904 * 104.79895 * 146.36395 * 6 5 4 8 8 C 1.55400 * 101.74283 * 323.02169 * 7 6 5 9 9 C 1.47441 * 111.00284 * 177.73574 * 5 4 2 10 10 H 1.09000 * 109.89215 * 117.17077 * 9 5 4 11 11 C 1.50703 * 109.88556 * 356.15193 * 9 5 4 12 12 O 1.21285 * 119.99259 * 300.66560 * 11 9 5 13 13 N 1.34769 * 120.00326 * 120.67013 * 11 9 5 14 14 C 1.47857 * 134.36537 * 179.97438 * 13 11 9 15 15 C 1.52554 * 85.66322 * 156.34610 * 14 13 11 16 16 C 1.47847 * 134.36452 * 359.96684 * 13 11 9 17 17 C 1.53863 * 115.93167 * 265.04016 * 15 14 13 18 18 C 1.55160 * 101.40401 * 196.33545 * 17 15 14 19 19 N 1.47534 * 105.01359 * 35.64497 * 18 17 15 20 20 C 1.36941 * 125.66320 * 156.35233 * 19 18 17 21 21 H 1.07997 * 120.00402 * 179.69035 * 20 19 18 22 22 C 1.38818 * 119.99522 * 359.69340 * 20 19 18 23 23 N 1.31623 * 120.00087 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99899 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47215 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47403 * 119.99609 * 24 22 20 27 27 H 1.48494 * 109.47093 * 239.99966 * 24 22 20 28 28 C 1.47363 * 108.68086 * 336.08718 * 19 18 17 29 29 H 1.09000 * 109.47026 * 60.00258 * 1 2 3 30 30 H 1.09004 * 109.46820 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47333 * 299.99907 * 1 2 3 32 32 H 1.08996 * 109.46976 * 239.99707 * 2 1 3 33 33 H 1.08997 * 109.46925 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47115 * 299.99687 * 3 2 1 35 35 H 1.08996 * 109.47590 * 60.00083 * 3 2 1 36 36 H 1.08998 * 109.47068 * 305.00007 * 4 2 1 37 37 H 1.09000 * 109.46857 * 185.00151 * 4 2 1 38 38 H 1.09001 * 110.37713 * 265.19864 * 6 5 4 39 39 H 1.09003 * 110.36989 * 27.53274 * 6 5 4 40 40 H 1.09000 * 110.99246 * 81.02589 * 7 6 5 41 41 H 1.08998 * 110.99437 * 204.80555 * 7 6 5 42 42 H 1.09004 * 110.67692 * 277.17995 * 8 7 6 43 43 H 1.08998 * 110.85011 * 153.86127 * 8 7 6 44 44 H 1.08999 * 113.83759 * 42.15554 * 14 13 11 45 45 H 1.09002 * 113.95335 * 270.54745 * 14 13 11 46 46 H 1.09001 * 113.84254 * 89.47064 * 16 13 11 47 47 H 1.09001 * 113.84122 * 317.83523 * 16 13 11 48 48 H 1.08993 * 111.04107 * 314.36385 * 17 15 14 49 49 H 1.08996 * 111.03830 * 78.27084 * 17 15 14 50 50 H 1.08996 * 110.33173 * 276.75413 * 18 17 15 51 51 H 1.09006 * 110.32993 * 154.52662 * 18 17 15 52 52 H 0.96999 * 119.99564 * 180.02562 * 23 22 20 53 53 H 1.09002 * 109.98330 * 121.37593 * 28 19 18 54 54 H 1.08999 * 109.98892 * 242.63553 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6515 -2.1367 1.1904 6 6 2.1621 -2.7756 -0.0411 7 6 2.4780 -4.2348 0.3720 8 6 3.0255 -4.0439 1.8137 9 6 2.1730 -2.8766 2.3542 10 1 1.3456 -3.2656 2.9476 11 6 3.0265 -1.9668 3.1997 12 8 4.0065 -1.4367 2.7205 13 7 2.7010 -1.7423 4.4880 14 6 3.2902 -0.9353 5.5778 15 6 1.8896 -0.9402 6.1823 16 6 1.6122 -2.2049 5.3748 17 6 1.0089 0.2769 5.8499 18 6 -0.1018 0.1551 6.9264 19 7 0.5842 -0.3603 8.1267 20 6 0.1554 -0.2084 9.4183 21 1 0.7290 -0.6294 10.2308 22 6 -1.0167 0.4866 9.6833 23 7 -1.7155 1.0001 8.6931 24 14 -1.6012 0.6945 11.4452 25 1 -0.6444 0.0295 12.3659 26 1 -1.6806 2.1407 11.7731 27 1 -2.9436 0.0780 11.5973 28 6 1.8040 -1.0712 7.7045 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6054 -0.2617 2.1370 37 1 3.1264 -0.6443 1.2952 38 1 1.4011 -2.7583 -0.8212 39 1 3.0675 -2.2732 -0.3818 40 1 1.5738 -4.8435 0.3774 41 1 3.2353 -4.6700 -0.2801 42 1 4.0810 -3.7723 1.7918 43 1 2.8701 -4.9430 2.4099 44 1 3.6301 0.0508 5.2614 45 1 4.0295 -1.4698 6.1743 46 1 1.8406 -3.1274 5.9087 47 1 0.6316 -2.2176 4.8989 48 1 1.5661 1.2064 5.9661 49 1 0.5922 0.1958 4.8460 50 1 -0.8708 -0.5448 6.5997 51 1 -0.5399 1.1321 7.1308 52 1 -2.5343 1.4861 8.8784 53 1 2.6795 -0.6159 8.1673 54 1 1.7387 -2.1224 7.9853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072886335.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:02 Heat of formation + Delta-G solvation = 17.054710 kcal Electronic energy + Delta-G solvation = -31025.607253 eV Core-core repulsion = 27191.559256 eV Total energy + Delta-G solvation = -3834.047997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.17860 -40.87917 -38.60620 -37.22227 -36.56954 -34.08391 -32.10619 -31.64139 -30.72694 -29.64600 -27.98835 -27.39108 -27.33730 -26.34322 -25.41858 -22.85719 -22.58200 -22.18409 -20.75695 -20.04280 -19.61227 -18.68341 -18.24706 -17.49417 -17.03538 -16.87607 -16.55401 -16.08864 -15.99971 -15.77801 -15.54502 -15.11218 -14.51484 -14.44170 -14.38032 -14.15368 -14.00456 -13.75924 -13.60345 -13.39605 -13.29414 -13.12507 -12.94431 -12.85072 -12.78296 -12.71466 -12.52319 -12.36160 -12.13712 -11.98202 -11.91686 -11.86404 -11.80095 -11.71692 -11.60810 -11.49530 -11.43107 -11.34538 -10.93820 -10.72214 -9.84438 -9.19179 -8.85125 -7.74285 -5.17858 1.41999 1.49741 1.49975 1.60172 1.72420 2.52190 2.92157 3.19343 3.31378 3.44891 3.54536 3.63725 3.69827 3.75551 3.89885 4.02715 4.06836 4.12629 4.19298 4.26887 4.31437 4.37932 4.48878 4.51778 4.57958 4.60584 4.65895 4.67997 4.71944 4.76538 4.79644 4.83024 4.84863 4.87136 4.92346 4.99030 5.02381 5.03988 5.06149 5.14260 5.17076 5.19753 5.21375 5.27795 5.39571 5.47775 5.50940 5.63813 5.84282 5.85563 5.94934 6.33185 6.62916 7.01741 7.13921 7.81406 8.45206 9.27892 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.002889 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.094595 B = 9689.918515 C =10472.848749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 C -0.145 4.145 4 C 0.037 3.963 5 N -0.504 5.504 6 C 0.037 3.963 7 C -0.117 4.117 8 C -0.125 4.125 9 C 0.057 3.943 10 H 0.107 0.893 11 C 0.522 3.478 12 O -0.579 6.579 13 N -0.634 5.634 14 C 0.125 3.875 15 C -0.096 4.096 16 C 0.127 3.873 17 C -0.102 4.102 18 C 0.162 3.838 19 N -0.626 5.626 20 C -0.233 4.233 21 H 0.084 0.916 22 C -0.068 4.068 23 N -0.949 5.949 24 Si 0.977 3.023 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.294 1.294 28 C 0.150 3.850 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.040 0.960 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.113 0.887 47 H 0.087 0.913 48 H 0.060 0.940 49 H 0.069 0.931 50 H -0.008 1.008 51 H 0.068 0.932 52 H 0.245 0.755 53 H 0.035 0.965 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.318 -9.754 -18.569 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.091 4.091 5 N -0.228 5.228 6 C -0.090 4.090 7 C -0.155 4.155 8 C -0.163 4.163 9 C -0.054 4.054 10 H 0.125 0.875 11 C 0.313 3.687 12 O -0.460 6.460 13 N -0.368 5.368 14 C 0.002 3.998 15 C -0.097 4.097 16 C 0.005 3.995 17 C -0.141 4.141 18 C 0.037 3.963 19 N -0.352 5.352 20 C -0.362 4.362 21 H 0.102 0.898 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.806 3.194 25 H -0.190 1.190 26 H -0.222 1.222 27 H -0.221 1.221 28 C 0.024 3.976 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.117 0.883 44 H 0.092 0.908 45 H 0.124 0.876 46 H 0.131 0.869 47 H 0.105 0.895 48 H 0.079 0.921 49 H 0.087 0.913 50 H 0.010 0.990 51 H 0.086 0.914 52 H 0.055 0.945 53 H 0.053 0.947 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.191 -9.448 -18.891 22.655 hybrid contribution 0.297 0.705 1.301 1.510 sum 8.488 -8.743 -17.590 21.399 Atomic orbital electron populations 1.21697 0.94156 1.02204 1.01030 1.21138 0.96897 0.95798 0.96915 1.21789 1.00550 0.95802 1.02103 1.22783 0.99598 0.88256 0.98445 1.64159 1.55237 1.02095 1.01357 1.23206 0.98912 0.94392 0.92535 1.22748 1.02310 0.95916 0.94526 1.22795 0.98535 0.96887 0.98110 1.22680 0.96596 0.93642 0.92508 0.87491 1.21155 0.84799 0.81825 0.80936 1.90595 1.30301 1.53295 1.71784 1.50281 1.29972 1.48073 1.08471 1.23053 0.95574 0.96117 0.85030 1.22305 0.95795 0.96597 0.94979 1.23241 0.91093 0.97359 0.87821 1.22437 0.96964 0.96144 0.98516 1.21671 0.91509 0.98958 0.84200 1.44875 1.24499 1.63404 1.02446 1.19493 1.04779 1.28147 0.83744 0.89845 1.25592 0.98072 1.01073 1.01297 1.70062 1.17266 1.42218 1.30397 0.85021 0.77714 0.76911 0.79759 1.18993 1.22209 1.22100 1.21148 0.89292 0.95728 0.91408 0.92075 0.91883 0.94264 0.90377 0.93361 0.90934 0.93651 0.93513 0.92824 0.88467 0.94130 0.89021 0.88927 0.92180 0.88268 0.90826 0.87608 0.86900 0.89460 0.92081 0.91255 0.99009 0.91410 0.94498 0.94716 0.94219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.08 71.98 0.65 -2.03 16 2 C -0.09 -1.86 2.74 -10.79 -0.03 -1.89 16 3 C -0.14 -2.96 9.19 71.98 0.66 -2.30 16 4 C 0.04 0.96 3.08 86.30 0.27 1.22 16 5 N -0.50 -11.29 4.71 -864.92 -4.07 -15.36 16 6 C 0.04 0.64 5.29 86.77 0.46 1.10 16 7 C -0.12 -1.61 7.08 32.07 0.23 -1.38 16 8 C -0.12 -2.21 6.46 31.87 0.21 -2.00 16 9 C 0.06 1.27 3.78 44.51 0.17 1.44 16 10 H 0.11 2.24 7.27 -2.39 -0.02 2.22 16 11 C 0.52 14.74 5.30 87.66 0.46 15.20 16 12 O -0.58 -19.94 14.55 -3.05 -0.04 -19.98 16 13 N -0.63 -17.05 3.62 -859.62 -3.11 -20.16 16 14 C 0.12 3.37 8.16 85.97 0.70 4.07 16 15 C -0.10 -2.94 0.97 -52.10 -0.05 -3.00 16 16 C 0.13 3.20 7.38 85.98 0.63 3.84 16 17 C -0.10 -3.74 6.42 31.63 0.20 -3.54 16 18 C 0.16 7.73 5.90 86.92 0.51 8.24 16 19 N -0.63 -30.76 3.41 -692.87 -2.36 -33.12 16 20 C -0.23 -12.60 10.28 84.03 0.86 -11.74 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 22 C -0.07 -3.78 5.49 84.86 0.47 -3.31 16 23 N -0.95 -55.83 10.09 21.65 0.22 -55.62 16 24 Si 0.98 44.93 29.55 68.60 2.03 46.96 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 27 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 28 C 0.15 5.56 6.75 86.22 0.58 6.14 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.28 7.75 -2.39 -0.02 1.26 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.47 6.72 -2.39 -0.02 1.46 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.05 1.42 7.64 -2.39 -0.02 1.40 16 37 H 0.05 1.67 5.34 -2.39 -0.01 1.65 16 38 H 0.10 1.43 8.11 -2.39 -0.02 1.41 16 39 H 0.04 0.80 7.51 -2.39 -0.02 0.78 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 1.29 7.53 -2.39 -0.02 1.27 16 43 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 45 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.11 2.36 8.00 -2.39 -0.02 2.34 16 47 H 0.09 2.23 7.98 -2.39 -0.02 2.21 16 48 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 49 H 0.07 2.39 8.06 -2.39 -0.02 2.37 16 50 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 51 H 0.07 3.78 5.88 -2.38 -0.01 3.77 16 52 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 53 H 0.03 1.27 8.09 -2.39 -0.02 1.25 16 54 H 0.04 1.39 7.86 -2.39 -0.02 1.37 16 Total: -1.00 -67.09 408.17 0.49 -66.60 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.85 Total: 20.62 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 6.99 Total: 10.07 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -9.33 Total: -124.26 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.04 Total: -19.98 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -67.09 0.49 -66.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072886335.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.650 kcal (2) G-P(sol) polarization free energy of solvation -67.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds