Wall clock time and date at job start Tue Mar 31 2020 19:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46862 * 2 1 4 4 N 1.46905 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.46853 * 111.00014 * 314.21205 * 4 3 2 6 6 C 1.53029 * 109.52066 * 174.15881 * 5 4 3 7 7 C 1.53123 * 109.28027 * 59.18188 * 6 5 4 8 8 C 1.53118 * 109.15713 * 302.34518 * 7 6 5 9 9 H 1.09007 * 109.53259 * 297.68846 * 8 7 6 10 10 C 1.50702 * 109.50390 * 177.59767 * 8 7 6 11 11 O 1.21279 * 119.99577 * 274.08412 * 10 8 7 12 12 N 1.34769 * 120.00474 * 94.07909 * 10 8 7 13 13 C 1.47857 * 134.36325 * 354.99537 * 12 10 8 14 14 C 1.52557 * 85.66177 * 156.36853 * 13 12 10 15 15 C 1.47853 * 134.36549 * 174.99346 * 12 10 8 16 16 C 1.53864 * 115.93329 * 140.71037 * 14 13 12 17 17 C 1.55154 * 101.40909 * 163.64852 * 16 14 13 18 18 N 1.47537 * 105.01055 * 324.35423 * 17 16 14 19 19 C 1.36944 * 125.66202 * 203.91760 * 18 17 16 20 20 H 1.07999 * 119.99740 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99751 * 359.97438 * 19 18 17 22 22 N 1.31618 * 119.99825 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99985 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47047 * 60.00501 * 23 21 19 25 25 H 1.48496 * 109.47290 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47253 * 300.00325 * 23 21 19 27 27 C 1.47367 * 108.68474 * 23.92211 * 18 17 16 28 28 C 1.46842 * 111.00036 * 190.00258 * 4 3 2 29 29 H 1.08996 * 109.47144 * 300.00206 * 1 2 3 30 30 H 1.09005 * 109.47160 * 59.99820 * 1 2 3 31 31 H 1.08996 * 109.46914 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46869 * 240.00268 * 2 1 3 33 33 H 1.08996 * 109.47077 * 120.00057 * 2 1 3 34 34 H 1.08997 * 109.47160 * 60.00445 * 3 2 1 35 35 H 1.08996 * 109.47321 * 299.99908 * 3 2 1 36 36 H 1.09003 * 109.45846 * 294.17973 * 5 4 3 37 37 H 1.09001 * 109.46093 * 54.15597 * 5 4 3 38 38 H 1.09002 * 109.50293 * 179.11811 * 6 5 4 39 39 H 1.08992 * 109.50749 * 299.23784 * 6 5 4 40 40 H 1.09001 * 109.52360 * 182.43590 * 7 6 5 41 41 H 1.09002 * 109.52324 * 62.24152 * 7 6 5 42 42 H 1.09005 * 113.83528 * 42.18624 * 13 12 10 43 43 H 1.08997 * 113.84207 * 270.55458 * 13 12 10 44 44 H 1.08997 * 113.84277 * 89.44750 * 15 12 10 45 45 H 1.09000 * 113.84436 * 317.81470 * 15 12 10 46 46 H 1.08999 * 111.03083 * 281.67861 * 16 14 13 47 47 H 1.08994 * 111.03649 * 45.61278 * 16 14 13 48 48 H 1.08990 * 110.33713 * 83.24230 * 17 16 14 49 49 H 1.09004 * 110.32875 * 205.47754 * 17 16 14 50 50 H 0.97005 * 120.00030 * 179.97438 * 22 21 19 51 51 H 1.09008 * 109.98463 * 238.61688 * 27 18 17 52 52 H 1.08994 * 109.98710 * 117.31141 * 27 18 17 53 53 H 1.08998 * 109.46556 * 65.82160 * 28 4 3 54 54 H 1.09006 * 109.45814 * 305.85767 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0349 0.4867 0.9837 6 6 5.5577 0.4071 0.8556 7 6 6.1584 1.7953 1.0939 8 6 5.5581 2.7819 0.0885 9 1 5.8218 2.4761 -0.9240 10 6 6.0997 4.1629 0.3541 11 8 5.5633 4.8772 1.1744 12 7 7.1801 4.6042 -0.3199 13 6 8.1144 3.9933 -1.2895 14 6 8.3836 5.4214 -1.7538 15 6 7.9035 5.8921 -0.3842 16 6 9.8453 5.7508 -2.1038 17 6 9.6787 7.0651 -2.9114 18 7 8.4216 6.8942 -3.6644 19 6 8.0907 7.5437 -4.8237 20 1 7.1413 7.3484 -5.3000 21 6 8.9752 8.4538 -5.3860 22 7 10.1320 8.6921 -4.8052 23 14 8.5242 9.3394 -6.9677 24 1 7.2838 10.1280 -6.7571 25 1 9.6302 10.2503 -7.3576 26 1 8.3005 8.3433 -8.0462 27 6 7.5808 5.9086 -2.9620 28 6 4.0352 2.7926 0.2388 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.7716 0.8173 1.9884 37 1 3.6032 -0.4973 0.8003 38 1 5.9492 -0.2907 1.5958 39 1 5.8214 0.0633 -0.1446 40 1 7.2394 1.7521 0.9610 41 1 5.9278 2.1228 2.1076 42 1 7.6262 3.3709 -2.0395 43 1 8.9754 3.5105 -0.8275 44 1 8.7004 5.9872 0.3533 45 1 7.2496 6.7633 -0.4221 46 1 10.4353 5.9175 -1.2025 47 1 10.2865 4.9668 -2.7190 48 1 9.6030 7.9175 -2.2364 49 1 10.5159 7.1970 -3.5969 50 1 10.7503 9.3279 -5.1983 51 1 7.3574 5.0710 -3.6230 52 1 6.6552 6.3782 -2.6293 53 1 3.7720 3.1124 1.2470 54 1 3.6036 3.4835 -0.4855 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072907414.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:42 Heat of formation + Delta-G solvation = 3.538761 kcal Electronic energy + Delta-G solvation = -29967.400017 eV Core-core repulsion = 26132.765924 eV Total energy + Delta-G solvation = -3834.634093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.93955 -40.56398 -39.12408 -37.24488 -35.93174 -34.10983 -32.90208 -32.25907 -31.26914 -29.75068 -27.73937 -27.38199 -27.21901 -25.66181 -24.66977 -23.92100 -22.21922 -22.04933 -20.80111 -20.18086 -19.53315 -18.82912 -18.04646 -17.42575 -16.99914 -16.58652 -16.46254 -16.27939 -15.94326 -15.76519 -15.50826 -15.13749 -15.04112 -14.78769 -14.36576 -14.19609 -14.11481 -13.80149 -13.64559 -13.53358 -13.45760 -13.14251 -12.98365 -12.91680 -12.79290 -12.69740 -12.54883 -12.39441 -12.08825 -12.05222 -11.93530 -11.89921 -11.75896 -11.63474 -11.55534 -11.39965 -11.29367 -11.27985 -10.73216 -10.56249 -9.74484 -9.34839 -8.87805 -7.76497 -5.20602 1.46724 1.49465 1.53467 1.55819 1.73062 2.49661 2.82790 3.26974 3.38726 3.44832 3.63531 3.67824 3.74210 3.79374 3.99156 4.03687 4.12370 4.16557 4.17131 4.23050 4.32594 4.39133 4.41386 4.51717 4.56052 4.58844 4.62505 4.66930 4.71424 4.73660 4.76735 4.80743 4.83096 4.85153 4.93174 4.96022 4.98050 5.07054 5.11143 5.14094 5.17598 5.20402 5.23120 5.28235 5.37728 5.40560 5.46849 5.69352 5.85269 6.00679 6.10914 6.33755 6.68870 7.06979 7.12621 7.79254 8.42632 9.24631 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.015750 B = 0.002406 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.365683 B =11636.794657 C =12756.827976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.052 3.948 4 N -0.539 5.539 5 C 0.043 3.957 6 C -0.108 4.108 7 C -0.103 4.103 8 C -0.086 4.086 9 H 0.109 0.891 10 C 0.534 3.466 11 O -0.596 6.596 12 N -0.640 5.640 13 C 0.133 3.867 14 C -0.097 4.097 15 C 0.121 3.879 16 C -0.110 4.110 17 C 0.152 3.848 18 N -0.627 5.627 19 C -0.240 4.240 20 H 0.076 0.924 21 C -0.065 4.065 22 N -0.946 5.946 23 Si 0.978 3.022 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.275 1.275 27 C 0.161 3.839 28 C 0.079 3.921 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.101 0.899 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.052 0.948 46 H 0.093 0.907 47 H 0.083 0.917 48 H -0.017 1.017 49 H 0.074 0.926 50 H 0.247 0.753 51 H 0.038 0.962 52 H 0.003 0.997 53 H 0.026 0.974 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.186 -22.765 12.334 27.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.075 4.075 4 N -0.264 5.264 5 C -0.084 4.084 6 C -0.145 4.145 7 C -0.141 4.141 8 C -0.108 4.108 9 H 0.127 0.873 10 C 0.325 3.675 11 O -0.477 6.477 12 N -0.373 5.373 13 C 0.011 3.989 14 C -0.098 4.098 15 C -0.002 4.002 16 C -0.149 4.149 17 C 0.027 3.973 18 N -0.353 5.353 19 C -0.370 4.370 20 H 0.094 0.906 21 C -0.257 4.257 22 N -0.595 5.595 23 Si 0.806 3.194 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.201 1.201 27 C 0.036 3.964 28 C -0.050 4.050 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.119 0.881 43 H 0.145 0.855 44 H 0.125 0.875 45 H 0.070 0.930 46 H 0.111 0.889 47 H 0.101 0.899 48 H 0.001 0.999 49 H 0.092 0.908 50 H 0.057 0.943 51 H 0.056 0.944 52 H 0.021 0.979 53 H 0.044 0.956 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.421 -22.472 12.260 27.277 hybrid contribution -0.661 1.926 -0.019 2.036 sum -10.082 -20.546 12.241 25.954 Atomic orbital electron populations 1.21735 0.94875 1.02430 1.01817 1.21646 0.96270 0.94891 1.02982 1.22225 0.86259 0.98548 1.00475 1.62003 1.08007 1.06002 1.50375 1.22382 0.96240 0.97219 0.92599 1.21584 0.93700 0.95420 1.03831 1.21509 1.00992 0.94662 0.96979 1.21187 0.95621 0.90581 1.03401 0.87259 1.20849 0.78997 0.89066 0.78572 1.90655 1.61081 1.59826 1.36146 1.50325 1.27105 1.15519 1.44370 1.23322 0.91855 0.94510 0.89185 1.22268 0.97189 0.97036 0.93328 1.23083 0.94297 0.87004 0.95774 1.22662 0.93650 0.98115 1.00458 1.21801 0.90045 0.92648 0.92796 1.44918 1.17421 1.47641 1.25308 1.19365 1.01345 1.17341 0.98900 0.90647 1.25585 0.96862 1.00805 1.02495 1.70037 1.09709 1.38578 1.41222 0.85162 0.76631 0.78107 0.79484 1.20989 1.21776 1.20051 1.20918 0.92271 0.91672 0.91559 1.21691 0.93249 0.90684 0.99353 0.92967 0.92716 0.91438 0.90888 0.90952 0.95597 0.91094 0.95635 0.88129 0.88963 0.90020 0.89768 0.93008 0.88111 0.85540 0.87519 0.92976 0.88855 0.89875 0.99937 0.90822 0.94291 0.94419 0.97856 0.95558 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.12 -1.47 5.18 30.60 0.16 -1.31 16 3 C 0.05 0.89 5.27 86.30 0.46 1.34 16 4 N -0.54 -10.12 4.81 -896.36 -4.31 -14.43 16 5 C 0.04 0.63 4.85 86.32 0.42 1.04 16 6 C -0.11 -1.35 6.09 30.65 0.19 -1.16 16 7 C -0.10 -1.75 5.27 30.67 0.16 -1.59 16 8 C -0.09 -1.90 2.53 -11.49 -0.03 -1.93 16 9 H 0.11 2.17 7.55 -2.38 -0.02 2.15 16 10 C 0.53 15.92 7.07 87.66 0.62 16.54 16 11 O -0.60 -23.00 16.96 -3.03 -0.05 -23.05 16 12 N -0.64 -17.56 3.62 -859.66 -3.11 -20.67 16 13 C 0.13 2.81 7.76 85.97 0.67 3.47 16 14 C -0.10 -2.95 0.97 -52.10 -0.05 -3.00 16 15 C 0.12 3.67 8.10 85.98 0.70 4.37 16 16 C -0.11 -3.52 6.45 31.62 0.20 -3.32 16 17 C 0.15 7.19 5.90 86.92 0.51 7.70 16 18 N -0.63 -32.02 3.41 -692.86 -2.36 -34.38 16 19 C -0.24 -13.57 10.28 84.03 0.86 -12.71 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 21 C -0.06 -3.68 5.49 84.86 0.47 -3.21 16 22 N -0.95 -55.90 10.09 21.65 0.22 -55.68 16 23 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 27 C 0.16 6.53 6.74 86.22 0.58 7.11 16 28 C 0.08 1.88 4.37 86.32 0.38 2.25 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.78 6.21 -2.39 -0.01 0.77 16 34 H 0.03 0.48 8.08 -2.39 -0.02 0.46 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.10 1.13 5.81 -2.39 -0.01 1.11 16 38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 1.87 7.73 -2.38 -0.02 1.85 16 43 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.11 2.75 8.02 -2.39 -0.02 2.73 16 45 H 0.05 1.90 8.02 -2.39 -0.02 1.88 16 46 H 0.09 2.45 7.97 -2.39 -0.02 2.43 16 47 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 48 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 49 H 0.07 3.99 5.89 -2.39 -0.01 3.98 16 50 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 51 H 0.04 1.47 8.00 -2.38 -0.02 1.45 16 52 H 0.00 0.15 7.87 -2.39 -0.02 0.14 16 53 H 0.03 0.72 7.83 -2.39 -0.02 0.70 16 54 H 0.06 1.62 8.12 -2.38 -0.02 1.60 16 Total: -1.00 -72.52 411.07 0.26 -72.26 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.84 Total: 13.40 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 7.00 Total: 14.70 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -9.56 Total: -125.16 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.05 Total: -23.05 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -72.52 0.26 -72.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072907414.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.798 kcal (2) G-P(sol) polarization free energy of solvation -72.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds