Wall clock time and date at job start Tue Mar 31 2020 19:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46722 * 2 1 4 4 N 1.46892 * 109.47345 * 119.99961 * 2 1 3 5 5 C 1.46850 * 111.00085 * 180.02562 * 4 2 1 6 6 C 1.53038 * 109.52402 * 185.83853 * 5 4 2 7 7 C 1.53119 * 109.27777 * 300.82574 * 6 5 4 8 8 C 1.50702 * 109.52028 * 177.55914 * 7 6 5 9 9 O 1.21274 * 120.00275 * 0.12457 * 8 7 6 10 10 N 1.34781 * 119.99712 * 180.12084 * 8 7 6 11 11 C 1.47885 * 134.33904 * 179.97438 * 10 8 7 12 12 C 1.52368 * 85.58964 * 156.55261 * 11 10 8 13 13 C 1.47887 * 134.34294 * 0.05480 * 10 8 7 14 14 C 1.53658 * 116.39717 * 141.35074 * 12 11 10 15 15 C 1.54607 * 102.73022 * 162.91744 * 14 12 11 16 16 N 1.47137 * 107.36428 * 339.24245 * 15 14 12 17 17 C 1.36938 * 125.58257 * 179.11256 * 16 15 14 18 18 H 1.08002 * 119.99870 * 179.97438 * 17 16 15 19 19 C 1.38812 * 120.00021 * 359.97336 * 17 16 15 20 20 N 1.31613 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99551 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47712 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46939 * 120.00343 * 21 19 17 24 24 H 1.48505 * 109.47084 * 239.99765 * 21 19 17 25 25 C 1.47725 * 108.82669 * 359.07915 * 16 15 14 26 26 C 1.53117 * 109.21729 * 57.61939 * 7 6 5 27 27 C 1.46853 * 111.00075 * 304.21235 * 4 2 1 28 28 H 1.08990 * 109.47272 * 299.99883 * 1 2 3 29 29 H 1.08999 * 109.47316 * 60.00362 * 1 2 3 30 30 H 1.09005 * 109.46697 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46791 * 240.00365 * 2 1 3 32 32 H 1.08996 * 109.47554 * 60.00068 * 3 2 1 33 33 H 1.09004 * 109.47055 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47431 * 300.00032 * 3 2 1 35 35 H 1.08999 * 109.46200 * 65.82416 * 5 4 2 36 36 H 1.08999 * 109.45503 * 305.85037 * 5 4 2 37 37 H 1.08993 * 109.50629 * 180.87830 * 6 5 4 38 38 H 1.09005 * 109.53443 * 60.78255 * 6 5 4 39 39 H 1.09002 * 109.52335 * 297.67898 * 7 6 5 40 40 H 1.09005 * 113.85578 * 42.38873 * 11 10 8 41 41 H 1.09009 * 113.97216 * 270.73274 * 11 10 8 42 42 H 1.08995 * 113.85518 * 89.28266 * 13 10 8 43 43 H 1.09002 * 113.85341 * 317.60896 * 13 10 8 44 44 H 1.08993 * 110.76200 * 44.60660 * 14 12 11 45 45 H 1.09003 * 110.75888 * 281.22670 * 14 12 11 46 46 H 1.08997 * 109.86564 * 98.69116 * 15 14 12 47 47 H 1.09000 * 109.86527 * 219.65895 * 15 14 12 48 48 H 0.97004 * 119.99629 * 179.97438 * 20 19 17 49 49 H 1.08994 * 110.39981 * 141.25248 * 25 16 15 50 50 H 1.09000 * 110.39188 * 263.54275 * 25 16 15 51 51 H 1.09006 * 109.49998 * 62.32233 * 26 7 6 52 52 H 1.08996 * 109.50512 * 182.43568 * 26 7 6 53 53 H 1.09001 * 109.45835 * 294.17390 * 27 4 2 54 54 H 1.08996 * 109.45936 * 54.15362 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 3.4877 -0.7115 1.2336 6 6 3.9608 -1.5626 2.4142 7 6 3.4089 -0.9735 3.7153 8 6 3.8217 -1.8414 4.8760 9 8 4.4934 -2.8326 4.6833 10 7 3.4444 -1.5161 6.1284 11 6 3.6602 -2.1176 7.4620 12 6 3.4024 -0.7176 8.0053 13 6 2.6488 -0.4163 6.7154 14 6 2.5907 -0.6287 9.3069 15 6 2.8911 0.8061 9.7984 16 7 4.1370 1.2413 9.1478 17 6 4.7344 2.4631 9.3072 18 1 5.6521 2.6878 8.7840 19 6 4.1606 3.4128 10.1413 20 7 3.0425 3.1387 10.7794 21 14 4.9753 5.0797 10.3581 22 1 6.2116 5.1370 9.5376 23 1 4.0412 6.1479 9.9202 24 1 5.3202 5.2798 11.7886 25 6 4.6380 0.1439 8.2952 26 6 1.8807 -0.9187 3.6354 27 6 1.4684 -0.0872 2.4185 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 3.8616 0.3061 1.3466 36 1 3.8670 -1.1366 0.3043 37 1 5.0502 -1.5637 2.4486 38 1 3.5994 -2.5840 2.2951 39 1 3.8026 0.0333 3.8552 40 1 4.6774 -2.4735 7.6258 41 1 2.9022 -2.8474 7.7466 42 1 1.5805 -0.6255 6.7700 43 1 2.8720 0.5634 6.2930 44 1 2.9388 -1.3657 10.0305 45 1 1.5263 -0.7539 9.1078 46 1 2.0748 1.4720 9.5186 47 1 3.0159 0.8081 10.8813 48 1 2.6418 3.8023 11.3625 49 1 5.0503 0.5413 7.3678 50 1 5.3918 -0.4365 8.8272 51 1 1.4851 -1.9296 3.5358 52 1 1.4851 -0.4602 4.5416 53 1 1.8522 0.9274 2.5257 54 1 0.3810 -0.0588 2.3501 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073099812.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:16 Heat of formation + Delta-G solvation = 7.140837 kcal Electronic energy + Delta-G solvation = -30545.963157 eV Core-core repulsion = 26711.485262 eV Total energy + Delta-G solvation = -3834.477895 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.95067 -40.63158 -39.34394 -37.22626 -35.93474 -34.10610 -32.25653 -31.52495 -31.13683 -29.76592 -28.10798 -27.68101 -27.34633 -26.09668 -24.85661 -24.10845 -22.15335 -21.88702 -20.47684 -20.05623 -19.59579 -18.78335 -17.95178 -17.42839 -16.85981 -16.68243 -16.57628 -15.99087 -15.87303 -15.58983 -15.55451 -15.14028 -15.04344 -14.55135 -14.27713 -14.16384 -14.11062 -13.73951 -13.70088 -13.53596 -13.26667 -13.13799 -12.92032 -12.84526 -12.80073 -12.73408 -12.45908 -12.37337 -12.19764 -11.98975 -11.96580 -11.93381 -11.71547 -11.67344 -11.65260 -11.56992 -11.29716 -11.20204 -10.68919 -10.56488 -9.69849 -9.19285 -8.87000 -7.83457 -5.18046 1.46518 1.47308 1.57062 1.59821 1.81567 2.49574 2.92830 3.25713 3.34322 3.46364 3.64011 3.68027 3.77007 3.79214 3.99643 4.09066 4.14509 4.20615 4.22586 4.27893 4.35828 4.40398 4.45479 4.51549 4.57510 4.61384 4.64564 4.67284 4.73021 4.76211 4.77469 4.80513 4.87711 4.88624 4.91724 4.98241 5.02421 5.06061 5.11166 5.12267 5.16006 5.17864 5.23649 5.30208 5.36497 5.42512 5.47458 5.74081 5.83728 6.17173 6.21876 6.22619 6.70322 7.12120 7.13661 7.79380 8.43251 9.26354 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.012233 B = 0.002908 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.294268 B = 9624.661925 C =10834.229023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.185 4.185 4 N -0.540 5.540 5 C 0.061 3.939 6 C -0.089 4.089 7 C -0.098 4.098 8 C 0.535 3.465 9 O -0.588 6.588 10 N -0.639 5.639 11 C 0.126 3.874 12 C -0.098 4.098 13 C 0.131 3.869 14 C -0.113 4.113 15 C 0.185 3.815 16 N -0.624 5.624 17 C -0.240 4.240 18 H 0.075 0.925 19 C -0.061 4.061 20 N -0.946 5.946 21 Si 0.973 3.027 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.294 1.294 25 C 0.160 3.840 26 C -0.099 4.099 27 C 0.054 3.946 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.018 0.982 47 H 0.004 0.996 48 H 0.247 0.753 49 H 0.031 0.969 50 H 0.021 0.979 51 H 0.067 0.933 52 H 0.081 0.919 53 H 0.037 0.963 54 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.965 -8.011 -19.588 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.244 4.244 4 N -0.265 5.265 5 C -0.067 4.067 6 C -0.127 4.127 7 C -0.119 4.119 8 C 0.327 3.673 9 O -0.469 6.469 10 N -0.373 5.373 11 C 0.004 3.996 12 C -0.100 4.100 13 C 0.009 3.991 14 C -0.151 4.151 15 C 0.060 3.940 16 N -0.351 5.351 17 C -0.369 4.369 18 H 0.093 0.907 19 C -0.254 4.254 20 N -0.595 5.595 21 Si 0.801 3.199 22 H -0.195 1.195 23 H -0.217 1.217 24 H -0.221 1.221 25 C 0.035 3.965 26 C -0.137 4.137 27 C -0.074 4.074 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.114 0.886 46 H 0.036 0.964 47 H 0.022 0.978 48 H 0.056 0.944 49 H 0.050 0.950 50 H 0.039 0.961 51 H 0.086 0.914 52 H 0.099 0.901 53 H 0.056 0.944 54 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.734 -8.878 -19.816 22.734 hybrid contribution 1.033 1.941 0.753 2.324 sum -5.701 -6.937 -19.063 21.071 Atomic orbital electron populations 1.21895 0.93578 1.02374 1.02369 1.21758 0.96305 0.92388 0.92822 1.22463 1.01344 0.97947 1.02652 1.62219 1.07752 1.54081 1.02450 1.22057 0.87776 0.98398 0.98498 1.21321 0.99909 0.99630 0.91885 1.21323 0.98873 0.99127 0.92558 1.20775 0.78565 0.84980 0.83007 1.90646 1.41602 1.29941 1.84733 1.50278 1.52795 1.29060 1.05200 1.23034 1.02781 0.95337 0.78422 1.22287 0.97016 0.95381 0.95274 1.23113 0.96845 0.90446 0.88673 1.22529 1.00449 0.96939 0.95210 1.20991 0.87421 0.91313 0.94261 1.44839 1.26173 1.11816 1.52227 1.19393 1.05156 0.89953 1.22395 0.90666 1.25535 0.98368 1.01783 0.99710 1.70168 1.20916 1.34707 1.33713 0.85097 0.77780 0.79892 0.77082 1.19466 1.21699 1.22086 1.21113 0.93778 0.88647 0.93000 1.21549 0.91688 1.01616 0.98872 1.22151 1.00978 0.95475 0.88771 0.92394 0.91103 0.92206 0.89613 0.92894 0.92804 0.91084 0.94234 0.89609 0.91818 0.91874 0.88868 0.90826 0.86884 0.86583 0.90509 0.90351 0.88566 0.96411 0.97761 0.94396 0.95041 0.96117 0.91445 0.90069 0.94435 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.84 71.98 0.64 -1.06 16 2 C 0.08 1.02 3.03 44.92 0.14 1.16 16 3 C -0.19 -2.43 8.50 71.98 0.61 -1.82 16 4 N -0.54 -9.20 4.68 -871.09 -4.08 -13.28 16 5 C 0.06 1.08 4.89 86.33 0.42 1.50 16 6 C -0.09 -2.00 4.68 30.65 0.14 -1.86 16 7 C -0.10 -2.27 2.42 -11.46 -0.03 -2.30 16 8 C 0.54 15.88 7.39 87.66 0.65 16.53 16 9 O -0.59 -21.71 16.70 -3.01 -0.05 -21.76 16 10 N -0.64 -17.40 3.58 -863.69 -3.09 -20.49 16 11 C 0.13 3.27 8.21 85.90 0.71 3.97 16 12 C -0.10 -2.92 0.99 -52.15 -0.05 -2.97 16 13 C 0.13 3.33 6.23 85.91 0.54 3.87 16 14 C -0.11 -3.51 6.36 31.36 0.20 -3.31 16 15 C 0.18 8.47 5.39 86.80 0.47 8.94 16 16 N -0.62 -30.74 3.41 -693.35 -2.36 -33.10 16 17 C -0.24 -13.18 10.28 84.03 0.86 -12.32 16 18 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 19 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 20 N -0.95 -55.12 10.30 21.65 0.22 -54.90 16 21 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 25 C 0.16 6.31 6.63 86.28 0.57 6.88 16 26 C -0.10 -1.91 5.23 30.65 0.16 -1.75 16 27 C 0.05 0.90 4.67 86.33 0.40 1.31 16 28 H 0.06 0.69 6.22 -2.39 -0.01 0.68 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.05 0.76 6.63 -2.39 -0.02 0.75 16 33 H 0.05 0.75 6.54 -2.38 -0.02 0.74 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.04 0.70 6.63 -2.39 -0.02 0.68 16 36 H 0.09 1.36 8.12 -2.39 -0.02 1.34 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.61 8.04 -2.38 -0.02 1.59 16 39 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 2.03 8.12 -2.38 -0.02 2.01 16 41 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.12 2.31 7.86 -2.39 -0.02 2.29 16 43 H 0.08 2.14 8.12 -2.39 -0.02 2.12 16 44 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.10 2.43 7.99 -2.39 -0.02 2.42 16 46 H 0.02 0.90 7.39 -2.39 -0.02 0.88 16 47 H 0.00 0.22 7.49 -2.39 -0.02 0.20 16 48 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 49 H 0.03 1.27 8.07 -2.39 -0.02 1.25 16 50 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 52 H 0.08 1.45 6.21 -2.39 -0.01 1.43 16 53 H 0.04 0.65 6.71 -2.39 -0.02 0.63 16 54 H 0.09 1.38 5.90 -2.39 -0.01 1.37 16 Total: -1.00 -68.52 402.36 0.41 -68.11 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.86 Total: 14.48 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 6.89 Total: 13.87 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -9.31 Total: -121.78 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.05 Total: -21.76 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -68.52 0.41 -68.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073099812.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.250 kcal (2) G-P(sol) polarization free energy of solvation -68.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds