Wall clock time and date at job start Tue Mar 31 2020 18:55:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52998 * 109.47412 * 2 1
4 4 C 1.52999 * 109.46967 * 120.00748 * 2 1 3
5 5 H 1.09000 * 109.47213 * 185.61276 * 4 2 1
6 6 C 1.50702 * 109.46703 * 305.60422 * 4 2 1
7 7 O 1.21288 * 120.00304 * 269.22188 * 6 4 2
8 8 N 1.34776 * 119.99727 * 89.22535 * 6 4 2
9 9 C 1.47395 * 135.85396 * 4.90165 * 8 6 4
10 10 C 1.52077 * 87.40914 * 154.39077 * 9 8 6
11 11 C 1.47400 * 135.85295 * 185.27343 * 8 6 4
12 12 C 1.53511 * 117.20818 * 267.27797 * 10 9 8
13 13 C 1.54632 * 102.70183 * 262.93274 * 12 10 9
14 14 N 1.47146 * 107.37887 * 339.38641 * 13 12 10
15 15 C 1.36936 * 125.58365 * 179.12678 * 14 13 12
16 16 H 1.07999 * 120.00171 * 179.97438 * 15 14 13
17 17 C 1.38811 * 119.99709 * 359.96953 * 15 14 13
18 18 N 1.31621 * 120.00113 * 0.02562 * 17 15 14
19 19 Si 1.86799 * 120.00103 * 180.02562 * 17 15 14
20 20 H 1.48494 * 109.47226 * 89.99924 * 19 17 15
21 21 H 1.48497 * 109.47482 * 210.00462 * 19 17 15
22 22 H 1.48507 * 109.46893 * 330.00427 * 19 17 15
23 23 C 1.47760 * 108.83908 * 359.08653 * 14 13 12
24 24 N 1.46893 * 109.47609 * 65.60575 * 4 2 1
25 25 C 1.48532 * 110.99682 * 54.81622 * 24 4 2
26 26 C 1.54942 * 103.22833 * 159.72064 * 25 24 4
27 27 C 1.54599 * 102.91858 * 322.58235 * 26 25 24
28 28 C 1.47901 * 110.99892 * 172.20788 * 24 4 2
29 29 H 1.09005 * 109.47174 * 300.00011 * 1 2 3
30 30 H 1.09000 * 109.46978 * 59.99475 * 1 2 3
31 31 H 1.09003 * 109.47451 * 179.97438 * 1 2 3
32 32 H 1.09003 * 109.46733 * 239.99701 * 2 1 3
33 33 H 1.09005 * 109.46980 * 174.57693 * 3 2 1
34 34 H 1.09004 * 109.47179 * 294.57415 * 3 2 1
35 35 H 1.09000 * 109.46710 * 54.57843 * 3 2 1
36 36 H 1.08997 * 113.54040 * 269.00115 * 9 8 6
37 37 H 1.08991 * 113.54356 * 39.67916 * 9 8 6
38 38 H 1.09000 * 113.53757 * 320.32251 * 11 8 6
39 39 H 1.08995 * 113.54172 * 90.92524 * 11 8 6
40 40 H 1.08993 * 110.76892 * 21.23744 * 12 10 9
41 41 H 1.09004 * 110.76269 * 144.63381 * 12 10 9
42 42 H 1.09002 * 109.86874 * 98.83683 * 13 12 10
43 43 H 1.09007 * 109.86499 * 219.80671 * 13 12 10
44 44 H 0.96999 * 119.99867 * 179.97438 * 18 17 15
45 45 H 1.08993 * 110.40503 * 263.50303 * 23 14 13
46 46 H 1.09000 * 110.40409 * 141.07311 * 23 14 13
47 47 H 1.09000 * 110.66791 * 278.14978 * 25 24 4
48 48 H 1.09001 * 110.67087 * 41.28586 * 25 24 4
49 49 H 1.08994 * 110.72724 * 204.22496 * 26 25 24
50 50 H 1.08997 * 110.72536 * 80.93916 * 26 25 24
51 51 H 1.08992 * 110.31317 * 263.03934 * 27 26 25
52 52 H 1.09005 * 110.30486 * 140.86867 * 27 26 25
53 53 H 1.08996 * 109.92040 * 333.51411 * 28 24 4
54 54 H 1.09002 * 109.91775 * 94.80935 * 28 24 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7214 1.2492
5 1 3.1253 -0.6352 1.3009
6 6 1.4274 -0.0957 2.4757
7 8 1.9931 0.8187 3.0369
8 7 0.2510 -0.5523 2.9491
9 6 -0.6648 -1.6585 2.6174
10 6 -1.1415 -1.6050 4.0605
11 6 -0.6827 -0.1588 4.0195
12 6 -0.4414 -2.5301 5.0658
13 6 -1.3967 -3.7442 5.1330
14 7 -2.7130 -3.2948 4.6528
15 6 -3.8306 -4.0783 4.5414
16 1 -4.7540 -3.6531 4.1770
17 6 -3.7764 -5.4191 4.8967
18 7 -2.6510 -5.9372 5.3412
19 14 -5.3006 -6.4881 4.7441
20 1 -5.3401 -7.1039 3.3935
21 1 -5.2610 -7.5568 5.7744
22 1 -6.5126 -5.6533 4.9432
23 6 -2.6319 -1.8595 4.3114
24 7 1.6639 -2.1399 1.1833
25 6 2.1460 -2.7603 -0.0771
26 6 2.1453 -4.2748 0.2503
27 6 2.6091 -4.3099 1.7246
28 6 2.2965 -2.9072 2.2781
29 1 -0.3634 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8932 -0.5139 -0.8900
33 1 3.1257 1.4439 0.0971
34 1 1.7582 1.9275 -0.9346
35 1 1.5996 1.9835 0.8375
36 1 -1.4335 -1.3854 1.8945
37 1 -0.1526 -2.5857 2.3605
38 1 -0.1853 0.1663 4.9333
39 1 -1.4556 0.5353 3.6896
40 1 0.5393 -2.8301 4.6969
41 1 -0.3584 -2.0493 6.0405
42 1 -1.0233 -4.5451 4.4949
43 1 -1.4760 -4.0967 6.1615
44 1 -2.6133 -6.8740 5.5898
45 1 -2.9867 -1.2505 5.1428
46 1 -3.2100 -1.6497 3.4115
47 1 1.4626 -2.5441 -0.8983
48 1 3.1536 -2.4184 -0.3135
49 1 2.8495 -4.8078 -0.3884
50 1 1.1425 -4.6903 0.1514
51 1 3.6794 -4.5085 1.7799
52 1 2.0538 -5.0673 2.2779
53 1 3.2186 -2.4172 2.5904
54 1 1.6103 -2.9853 3.1215
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001073462215.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:55:11
Heat of formation + Delta-G solvation = 25.484065 kcal
Electronic energy + Delta-G solvation = -32243.361893 eV
Core-core repulsion = 28409.679420 eV
Total energy + Delta-G solvation = -3833.682473 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.21124 -40.45122 -39.09888 -37.24691 -36.45046 -34.02546 -32.40400 -31.13939
-30.30956 -29.72928 -28.12293 -27.81161 -26.92326 -26.60820 -25.22309 -22.73183
-22.18053 -22.08974 -21.08684 -20.05837 -19.48503 -18.54371 -17.99309 -17.46303
-17.06190 -16.78333 -16.59600 -16.22582 -16.01134 -15.55792 -15.50860 -14.82963
-14.70162 -14.33773 -14.11622 -14.06322 -13.97358 -13.69514 -13.65065 -13.35270
-13.27711 -13.20005 -12.99789 -12.82270 -12.80004 -12.70878 -12.25954 -12.22589
-12.12325 -11.99032 -11.93466 -11.87611 -11.78965 -11.70453 -11.65954 -11.56152
-11.37669 -11.05823 -10.65372 -10.62184 -9.60791 -9.43907 -8.80517 -7.77200
-5.11446 1.51240 1.52168 1.57103 1.60535 1.93002 2.55436 2.81150
3.27610 3.39705 3.50435 3.64577 3.71517 3.75626 3.88361 3.93463
3.99145 4.06937 4.15554 4.21696 4.26815 4.35812 4.39175 4.51546
4.55019 4.61195 4.64865 4.69162 4.70522 4.78069 4.79501 4.86696
4.91734 4.95585 4.96471 5.01116 5.03786 5.05729 5.10789 5.15036
5.15738 5.22948 5.24774 5.31396 5.33083 5.36738 5.46229 5.54233
5.72371 5.82452 5.84286 5.89983 6.26272 6.81404 7.16349 7.18045
7.85329 8.50189 9.33130
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.013911 B = 0.003861 C = 0.003474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2012.312046 B = 7250.401912 C = 8057.561846
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.077 4.077
3 C -0.145 4.145
4 C 0.075 3.925
5 H 0.068 0.932
6 C 0.554 3.446
7 O -0.595 6.595
8 N -0.620 5.620
9 C 0.145 3.855
10 C -0.104 4.104
11 C 0.119 3.881
12 C -0.101 4.101
13 C 0.196 3.804
14 N -0.623 5.623
15 C -0.235 4.235
16 H 0.085 0.915
17 C -0.064 4.064
18 N -0.951 5.951
19 Si 0.973 3.027
20 H -0.286 1.286
21 H -0.299 1.299
22 H -0.270 1.270
23 C 0.153 3.847
24 N -0.508 5.508
25 C 0.038 3.962
26 C -0.118 4.118
27 C -0.128 4.128
28 C 0.029 3.971
29 H 0.038 0.962
30 H 0.067 0.933
31 H 0.067 0.933
32 H 0.105 0.895
33 H 0.055 0.945
34 H 0.077 0.923
35 H 0.035 0.965
36 H 0.090 0.910
37 H 0.094 0.906
38 H 0.071 0.929
39 H 0.104 0.896
40 H 0.068 0.932
41 H 0.066 0.934
42 H 0.014 0.986
43 H 0.001 0.999
44 H 0.244 0.756
45 H 0.029 0.971
46 H 0.054 0.946
47 H 0.098 0.902
48 H 0.057 0.943
49 H 0.090 0.910
50 H 0.067 0.933
51 H 0.078 0.922
52 H 0.061 0.939
53 H 0.038 0.962
54 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.628 9.487 -14.012 19.982
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.096 4.096
3 C -0.202 4.202
4 C -0.037 4.037
5 H 0.086 0.914
6 C 0.345 3.655
7 O -0.476 6.476
8 N -0.352 5.352
9 C 0.023 3.977
10 C -0.106 4.106
11 C -0.004 4.004
12 C -0.139 4.139
13 C 0.071 3.929
14 N -0.349 5.349
15 C -0.364 4.364
16 H 0.102 0.898
17 C -0.257 4.257
18 N -0.600 5.600
19 Si 0.802 3.198
20 H -0.213 1.213
21 H -0.226 1.226
22 H -0.195 1.195
23 C 0.027 3.973
24 N -0.234 5.234
25 C -0.089 4.089
26 C -0.156 4.156
27 C -0.166 4.166
28 C -0.099 4.099
29 H 0.057 0.943
30 H 0.086 0.914
31 H 0.086 0.914
32 H 0.123 0.877
33 H 0.074 0.926
34 H 0.096 0.904
35 H 0.054 0.946
36 H 0.108 0.892
37 H 0.112 0.888
38 H 0.089 0.911
39 H 0.122 0.878
40 H 0.086 0.914
41 H 0.085 0.915
42 H 0.032 0.968
43 H 0.019 0.981
44 H 0.053 0.947
45 H 0.047 0.953
46 H 0.072 0.928
47 H 0.116 0.884
48 H 0.076 0.924
49 H 0.109 0.891
50 H 0.085 0.915
51 H 0.096 0.904
52 H 0.080 0.920
53 H 0.056 0.944
54 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 10.491 9.841 -13.715 19.875
hybrid contribution 0.152 -0.795 0.709 1.076
sum 10.643 9.046 -13.006 19.086
Atomic orbital electron populations
1.21893 0.94029 1.02687 1.01449 1.21151 0.97180 0.95936 0.95343
1.21829 1.01026 0.95367 1.02017 1.22121 0.97960 0.89887 0.93706
0.91403 1.20281 0.79352 0.81671 0.84243 1.90672 1.63060 1.32951
1.60948 1.49632 1.18780 1.32107 1.34703 1.22837 0.89834 0.90653
0.94377 1.22070 0.96345 0.95167 0.97002 1.22800 0.90685 0.95833
0.91068 1.22244 0.97842 0.95877 0.97903 1.20840 0.83838 0.92371
0.95853 1.44787 1.07860 1.05801 1.76445 1.19445 0.89604 0.91122
1.36199 0.89767 1.25547 0.99845 0.98284 1.01997 1.70185 1.26163
1.12456 1.51210 0.85160 0.79453 0.78408 0.76812 1.21294 1.22630
1.19480 1.21271 0.93021 0.84977 0.97984 1.64859 1.54907 0.99963
1.03660 1.23330 0.99618 0.93816 0.92150 1.22458 1.02197 0.95744
0.95159 1.22353 1.01678 0.95462 0.97106 1.22961 0.97129 0.94627
0.95162 0.94319 0.91416 0.91384 0.87726 0.92558 0.90392 0.94624
0.89166 0.88789 0.91068 0.87819 0.91383 0.91517 0.96811 0.98073
0.94678 0.95284 0.92790 0.88394 0.92432 0.89133 0.91454 0.90364
0.92010 0.94379 0.91674
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.70 7.62 71.98 0.55 -2.15 16
2 C -0.08 -1.39 2.45 -10.80 -0.03 -1.42 16
3 C -0.14 -2.70 8.84 71.98 0.64 -2.07 16
4 C 0.08 1.71 1.44 44.17 0.06 1.77 16
5 H 0.07 1.60 7.88 -2.39 -0.02 1.58 16
6 C 0.55 16.37 4.90 87.66 0.43 16.80 16
7 O -0.60 -21.90 17.18 -3.05 -0.05 -21.95 16
8 N -0.62 -17.41 2.66 -859.76 -2.29 -19.69 16
9 C 0.15 4.11 5.26 83.77 0.44 4.55 16
10 C -0.10 -3.31 1.06 -52.62 -0.06 -3.36 16
11 C 0.12 3.28 8.03 83.67 0.67 3.95 16
12 C -0.10 -3.67 6.40 31.32 0.20 -3.47 16
13 C 0.20 9.44 5.39 86.81 0.47 9.91 16
14 N -0.62 -30.51 3.41 -693.43 -2.36 -32.87 16
15 C -0.23 -12.67 10.28 84.03 0.86 -11.80 16
16 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16
17 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16
18 N -0.95 -56.21 10.30 21.65 0.22 -55.99 16
19 Si 0.97 44.88 29.55 68.60 2.03 46.91 16
20 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16
21 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16
22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16
23 C 0.15 5.73 6.70 86.23 0.58 6.31 16
24 N -0.51 -10.84 2.27 -862.24 -1.96 -12.80 16
25 C 0.04 0.60 5.18 86.65 0.45 1.05 16
26 C -0.12 -2.00 7.06 31.80 0.22 -1.78 16
27 C -0.13 -2.62 6.93 31.48 0.22 -2.40 16
28 C 0.03 0.69 5.42 86.45 0.47 1.16 16
29 H 0.04 0.87 6.33 -2.38 -0.02 0.86 16
30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16
31 H 0.07 1.34 6.84 -2.39 -0.02 1.33 16
32 H 0.10 1.45 6.53 -2.39 -0.02 1.43 16
33 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16
34 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16
35 H 0.03 0.85 7.14 -2.39 -0.02 0.84 16
36 H 0.09 2.38 7.28 -2.39 -0.02 2.37 16
37 H 0.09 2.90 5.13 -2.39 -0.01 2.88 16
38 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16
39 H 0.10 2.44 8.14 -2.39 -0.02 2.43 16
40 H 0.07 2.37 6.23 -2.39 -0.01 2.36 16
41 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16
42 H 0.01 0.74 7.39 -2.39 -0.02 0.72 16
43 H 0.00 0.06 7.49 -2.38 -0.02 0.04 16
44 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16
45 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16
46 H 0.05 1.89 8.00 -2.39 -0.02 1.88 16
47 H 0.10 1.35 7.53 -2.39 -0.02 1.34 16
48 H 0.06 0.80 8.02 -2.39 -0.02 0.78 16
49 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16
50 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
51 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
52 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16
53 H 0.04 0.93 7.61 -2.39 -0.02 0.91 16
54 H 0.06 1.89 5.02 -2.39 -0.01 1.88 16
Total: -1.00 -67.11 395.25 3.09 -64.02
By element:
Atomic # 1 Polarization: 17.55 SS G_CDS: 0.86 Total: 18.41 kcal
Atomic # 6 Polarization: 7.31 SS G_CDS: 6.64 Total: 13.96 kcal
Atomic # 7 Polarization: -114.96 SS G_CDS: -6.39 Total: -121.35 kcal
Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.95 kcal
Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal
Total: -67.11 3.09 -64.02 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001073462215.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.501 kcal
(2) G-P(sol) polarization free energy of solvation -67.111 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.389 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.017 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.484 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds