Wall clock time and date at job start Tue Mar 31 2020 18:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47151 * 2 1 4 4 C 1.52998 * 109.46952 * 120.00601 * 2 1 3 5 5 H 1.09008 * 109.46765 * 300.30333 * 4 2 1 6 6 C 1.50698 * 109.46959 * 180.30521 * 4 2 1 7 7 O 1.21283 * 119.99893 * 277.75818 * 6 4 2 8 8 N 1.34769 * 120.00238 * 97.76207 * 6 4 2 9 9 C 1.47892 * 134.34241 * 174.86598 * 8 6 4 10 10 C 1.52380 * 85.59055 * 156.53305 * 9 8 6 11 11 C 1.47893 * 134.34274 * 354.88915 * 8 6 4 12 12 C 1.53653 * 116.39787 * 141.35000 * 10 9 8 13 13 C 1.54599 * 102.72968 * 162.91530 * 12 10 9 14 14 N 1.47134 * 107.37012 * 339.24564 * 13 12 10 15 15 C 1.36935 * 125.59009 * 179.07927 * 14 13 12 16 16 H 1.07994 * 120.00051 * 179.97438 * 15 14 13 17 17 C 1.38806 * 119.99972 * 359.96892 * 15 14 13 18 18 N 1.31619 * 120.00092 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00181 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46767 * 60.00265 * 19 17 15 21 21 H 1.48502 * 109.47128 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47229 * 300.00256 * 19 17 15 23 23 C 1.47729 * 108.82037 * 359.07269 * 14 13 12 24 24 N 1.46896 * 109.47485 * 60.29884 * 4 2 1 25 25 C 1.48539 * 110.99557 * 47.42274 * 24 4 2 26 26 C 1.54941 * 103.22456 * 159.71876 * 25 24 4 27 27 C 1.54587 * 102.92419 * 322.58742 * 26 25 24 28 28 C 1.47897 * 111.00159 * 164.81644 * 24 4 2 29 29 H 1.09005 * 109.46829 * 64.62757 * 1 2 3 30 30 H 1.08995 * 109.47462 * 184.62974 * 1 2 3 31 31 H 1.09006 * 109.46822 * 304.62886 * 1 2 3 32 32 H 1.09002 * 109.46710 * 240.00368 * 2 1 3 33 33 H 1.09002 * 109.46911 * 185.62084 * 3 2 1 34 34 H 1.08993 * 109.47669 * 305.62804 * 3 2 1 35 35 H 1.09004 * 109.47021 * 65.63161 * 3 2 1 36 36 H 1.08996 * 113.85395 * 42.36770 * 9 8 6 37 37 H 1.09001 * 113.85552 * 270.69677 * 9 8 6 38 38 H 1.09002 * 113.85385 * 89.30156 * 11 8 6 39 39 H 1.09001 * 113.85570 * 317.63737 * 11 8 6 40 40 H 1.08997 * 110.75600 * 281.22925 * 12 10 9 41 41 H 1.09002 * 110.75623 * 44.60568 * 12 10 9 42 42 H 1.09007 * 109.86524 * 98.69588 * 13 12 10 43 43 H 1.09008 * 109.86478 * 219.66213 * 13 12 10 44 44 H 0.97003 * 120.00295 * 180.02562 * 18 17 15 45 45 H 1.08995 * 110.40261 * 263.65665 * 23 14 13 46 46 H 1.09005 * 110.39310 * 141.25114 * 23 14 13 47 47 H 1.08995 * 110.66878 * 278.15322 * 25 24 4 48 48 H 1.08998 * 110.67113 * 41.28803 * 25 24 4 49 49 H 1.09004 * 110.72361 * 204.22718 * 26 25 24 50 50 H 1.09005 * 110.87501 * 81.01990 * 26 25 24 51 51 H 1.09002 * 110.31057 * 263.04263 * 27 26 25 52 52 H 1.09004 * 110.31478 * 140.87567 * 27 26 25 53 53 H 1.08996 * 109.92005 * 333.51451 * 28 24 4 54 54 H 1.09000 * 109.91599 * 94.80690 * 28 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6722 -0.2107 2.1392 6 6 3.5470 -0.7148 1.2530 7 8 4.1586 -1.5414 0.6098 8 7 4.2151 0.2094 1.9711 9 6 5.6424 0.4483 2.2756 10 6 5.2274 1.8945 2.5172 11 6 3.8125 1.3880 2.7686 12 6 5.9129 2.6153 3.6883 13 6 5.6284 4.1044 3.3852 14 7 5.3137 4.2086 1.9517 15 6 4.9857 5.3614 1.2895 16 1 4.7712 5.3340 0.2315 17 6 4.9289 6.5652 1.9783 18 7 5.1908 6.5987 3.2677 19 14 4.4808 8.1378 1.0751 20 1 3.1262 7.9993 0.4824 21 1 4.4904 9.2762 2.0287 22 1 5.4699 8.3881 -0.0038 23 6 5.4098 2.8656 1.3439 24 7 1.5563 -2.1084 1.2455 25 6 1.7764 -2.7453 -0.0783 26 6 1.7200 -4.2599 0.2433 27 6 2.4180 -4.3473 1.6199 28 6 2.3042 -2.9332 2.2190 29 1 -0.3633 0.4404 -0.9286 30 1 -0.3634 -1.0242 0.0829 31 1 -0.3633 0.5840 0.8457 32 1 1.8933 -0.5138 -0.8901 33 1 3.1254 1.4441 -0.1007 34 1 1.5969 1.9846 -0.8352 35 1 1.7614 1.9264 0.9362 36 1 6.3038 0.3168 1.4192 37 1 5.9941 -0.0647 3.1706 38 1 3.6044 1.1624 3.8145 39 1 3.0375 1.9940 2.2993 40 1 5.4653 2.3218 4.6378 41 1 6.9851 2.4191 3.6883 42 1 4.7793 4.4471 3.9768 43 1 6.5081 4.7045 3.6181 44 1 5.1507 7.4399 3.7491 45 1 6.3879 2.7259 0.8836 46 1 4.6188 2.7245 0.6073 47 1 0.9839 -2.4700 -0.7741 48 1 2.7530 -2.4731 -0.4786 49 1 2.2681 -4.8336 -0.5041 50 1 0.6881 -4.6044 0.3115 51 1 3.4654 -4.6225 1.4962 52 1 1.9088 -5.0703 2.2572 53 1 3.2985 -2.5145 2.3741 54 1 1.7635 -2.9730 3.1647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073462216.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:15 Heat of formation + Delta-G solvation = 19.035485 kcal Electronic energy + Delta-G solvation = -31667.458537 eV Core-core repulsion = 27833.496433 eV Total energy + Delta-G solvation = -3833.962104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.26734 -40.87334 -38.50532 -37.17217 -36.65475 -34.09179 -32.28521 -31.45980 -30.17308 -29.71894 -28.39395 -27.61806 -27.24219 -26.67548 -25.12335 -22.73248 -22.25095 -21.95177 -21.08087 -20.15191 -19.39242 -18.83619 -18.32625 -17.56969 -17.09253 -16.81325 -16.50697 -16.43023 -15.99403 -15.59083 -15.30940 -15.10099 -14.63322 -14.42505 -14.22737 -14.11808 -13.96811 -13.68932 -13.60373 -13.44989 -13.26532 -13.10584 -13.04123 -12.84308 -12.71643 -12.51680 -12.41288 -12.27893 -12.20067 -12.06518 -11.99934 -11.97913 -11.82710 -11.66997 -11.65130 -11.56882 -11.40310 -11.24711 -10.96280 -10.65546 -9.71729 -9.30860 -8.86394 -7.82328 -5.16923 1.47351 1.49192 1.49697 1.55524 1.77249 2.50498 2.89845 3.23262 3.34101 3.45194 3.56032 3.65471 3.72937 3.76022 3.92783 3.96454 4.08255 4.12623 4.18540 4.21597 4.37228 4.41726 4.43767 4.52490 4.55165 4.59347 4.65671 4.69842 4.74575 4.75279 4.78564 4.81980 4.91688 4.93547 4.96672 5.00753 5.03660 5.08048 5.09552 5.11826 5.15059 5.19648 5.21105 5.31111 5.36289 5.47305 5.47727 5.72933 5.80920 5.83189 5.86533 6.22921 6.66719 7.05944 7.14155 7.80133 8.44101 9.27194 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.003219 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.010548 B = 8696.495879 C = 9664.627462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 C -0.148 4.148 4 C 0.071 3.929 5 H 0.105 0.895 6 C 0.515 3.485 7 O -0.578 6.578 8 N -0.636 5.636 9 C 0.125 3.875 10 C -0.096 4.096 11 C 0.123 3.877 12 C -0.113 4.113 13 C 0.185 3.815 14 N -0.622 5.622 15 C -0.240 4.240 16 H 0.076 0.924 17 C -0.060 4.060 18 N -0.947 5.947 19 Si 0.971 3.029 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.282 1.282 23 C 0.161 3.839 24 N -0.483 5.483 25 C 0.017 3.983 26 C -0.116 4.116 27 C -0.122 4.122 28 C 0.026 3.974 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.017 0.983 43 H 0.004 0.996 44 H 0.247 0.753 45 H 0.017 0.983 46 H 0.036 0.964 47 H 0.088 0.912 48 H 0.053 0.947 49 H 0.073 0.927 50 H 0.084 0.916 51 H 0.055 0.945 52 H 0.087 0.913 53 H 0.030 0.970 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 -19.863 -0.926 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.097 4.097 3 C -0.206 4.206 4 C -0.041 4.041 5 H 0.123 0.877 6 C 0.305 3.695 7 O -0.459 6.459 8 N -0.371 5.371 9 C 0.003 3.997 10 C -0.097 4.097 11 C 0.001 3.999 12 C -0.152 4.152 13 C 0.061 3.939 14 N -0.348 5.348 15 C -0.369 4.369 16 H 0.094 0.906 17 C -0.253 4.253 18 N -0.596 5.596 19 Si 0.800 3.200 20 H -0.202 1.202 21 H -0.220 1.220 22 H -0.208 1.208 23 C 0.036 3.964 24 N -0.206 5.206 25 C -0.110 4.110 26 C -0.154 4.154 27 C -0.160 4.160 28 C -0.102 4.102 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.036 0.964 43 H 0.022 0.978 44 H 0.056 0.944 45 H 0.035 0.965 46 H 0.054 0.946 47 H 0.106 0.894 48 H 0.071 0.929 49 H 0.092 0.908 50 H 0.103 0.897 51 H 0.073 0.927 52 H 0.105 0.895 53 H 0.048 0.952 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.639 -20.208 -1.199 22.010 hybrid contribution 1.229 1.505 -0.542 2.018 sum -7.410 -18.703 -1.741 20.193 Atomic orbital electron populations 1.21716 0.91971 1.03011 1.02178 1.21100 0.98309 0.95060 0.95246 1.21957 1.00052 0.95771 1.02828 1.22142 0.87386 0.92836 1.01745 0.87720 1.21767 0.91507 0.78521 0.77687 1.90622 1.70879 1.39815 1.44578 1.50476 1.09615 1.28087 1.48879 1.23023 0.83428 0.91968 1.01322 1.22253 0.96532 0.93591 0.97339 1.23218 0.97042 0.82864 0.96780 1.22529 1.00718 0.94559 0.97397 1.20981 0.96975 0.91952 0.84035 1.44793 1.81345 1.02750 1.05925 1.19308 1.39131 0.85561 0.92901 0.90625 1.25521 1.02563 1.00463 0.96757 1.70153 1.56284 1.25248 1.07882 0.85261 0.78285 0.79242 0.77201 1.20248 1.22021 1.20813 1.21117 0.97480 0.84159 0.93670 1.65297 1.49709 0.99506 1.06079 1.23524 1.01259 0.94574 0.91624 1.22435 1.01566 0.94949 0.96483 1.22297 1.00566 0.95882 0.97277 1.23023 0.96167 0.94089 0.96882 0.91943 0.91053 0.92250 0.91498 0.94557 0.91386 0.92024 0.90952 0.87038 0.87012 0.90043 0.88749 0.90417 0.96440 0.97781 0.94416 0.96492 0.94559 0.89419 0.92864 0.90795 0.89726 0.92657 0.89471 0.95189 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.91 71.98 0.64 -1.78 16 2 C -0.08 -1.77 1.98 -10.79 -0.02 -1.79 16 3 C -0.15 -3.80 8.01 71.98 0.58 -3.22 16 4 C 0.07 1.70 1.99 44.17 0.09 1.79 16 5 H 0.10 2.37 7.69 -2.38 -0.02 2.35 16 6 C 0.52 14.76 4.20 87.66 0.37 15.13 16 7 O -0.58 -19.91 13.83 -3.04 -0.04 -19.95 16 8 N -0.64 -17.21 3.31 -863.51 -2.86 -20.07 16 9 C 0.13 3.24 8.21 85.91 0.71 3.94 16 10 C -0.10 -2.87 0.99 -52.16 -0.05 -2.92 16 11 C 0.12 3.21 7.38 85.90 0.63 3.84 16 12 C -0.11 -3.58 6.36 31.36 0.20 -3.38 16 13 C 0.19 8.54 5.39 86.80 0.47 9.00 16 14 N -0.62 -30.54 3.41 -693.34 -2.36 -32.90 16 15 C -0.24 -13.14 10.28 84.03 0.86 -12.28 16 16 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 17 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 18 N -0.95 -55.27 10.30 21.65 0.22 -55.05 16 19 Si 0.97 45.05 29.55 68.60 2.03 47.07 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 23 C 0.16 6.33 6.63 86.28 0.57 6.91 16 24 N -0.48 -10.71 4.67 -862.24 -4.03 -14.74 16 25 C 0.02 0.38 4.51 86.65 0.39 0.77 16 26 C -0.12 -2.07 7.06 31.80 0.22 -1.84 16 27 C -0.12 -2.28 6.93 31.47 0.22 -2.06 16 28 C 0.03 0.57 6.17 86.45 0.53 1.10 16 29 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.07 1.27 6.61 -2.39 -0.02 1.26 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.07 1.65 6.60 -2.39 -0.02 1.64 16 33 H 0.04 1.09 6.05 -2.39 -0.01 1.07 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.57 6.48 -2.38 -0.02 1.56 16 36 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 37 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.11 2.37 8.04 -2.39 -0.02 2.35 16 39 H 0.08 2.34 5.78 -2.39 -0.01 2.32 16 40 H 0.09 2.45 7.99 -2.39 -0.02 2.43 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.02 0.89 7.38 -2.38 -0.02 0.88 16 43 H 0.00 0.21 7.49 -2.38 -0.02 0.19 16 44 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.04 1.46 6.90 -2.38 -0.02 1.44 16 47 H 0.09 1.71 6.84 -2.39 -0.02 1.69 16 48 H 0.05 1.49 5.36 -2.39 -0.01 1.48 16 49 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 51 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 52 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 53 H 0.03 0.80 5.35 -2.39 -0.01 0.78 16 54 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -66.51 395.28 0.70 -65.81 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.87 Total: 19.46 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 6.88 Total: 10.37 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -9.03 Total: -122.76 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.04 Total: -19.95 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -66.51 0.70 -65.81 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073462216.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.843 kcal (2) G-P(sol) polarization free energy of solvation -66.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds