Wall clock time and date at job start Tue Mar 31 2020 19:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.46982 * 2 1 4 4 C 1.50698 * 109.47479 * 240.00048 * 2 1 3 5 5 O 1.21288 * 119.99414 * 24.88113 * 4 2 1 6 6 N 1.34777 * 120.00552 * 204.88309 * 4 2 1 7 7 C 1.46490 * 120.00259 * 184.79589 * 6 4 2 8 8 H 1.09006 * 112.88866 * 336.34490 * 7 6 4 9 9 C 1.53951 * 113.66339 * 107.81074 * 7 6 4 10 10 C 1.53954 * 87.29547 * 89.74127 * 9 7 6 11 11 H 1.08994 * 113.66591 * 139.20620 * 10 9 7 12 12 N 1.46501 * 113.74483 * 270.25132 * 10 9 7 13 13 C 1.36935 * 119.99827 * 252.22624 * 12 10 9 14 14 H 1.07996 * 120.00366 * 0.02562 * 13 12 10 15 15 C 1.38823 * 119.99594 * 179.97438 * 13 12 10 16 16 N 1.31609 * 120.00130 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99551 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47561 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47191 * 120.00282 * 17 15 13 20 20 H 1.48499 * 109.47234 * 239.99996 * 17 15 13 21 21 C 1.52911 * 113.66464 * 205.00046 * 7 6 4 22 22 C 1.52904 * 121.14010 * 144.70762 * 21 7 6 23 23 C 1.53943 * 86.78628 * 209.37923 * 22 21 7 24 24 C 1.52904 * 121.13713 * 36.14528 * 21 7 6 25 25 N 1.46898 * 109.47401 * 119.99855 * 2 1 3 26 26 C 1.48531 * 111.00072 * 306.21280 * 25 2 1 27 27 C 1.54940 * 103.22875 * 159.71942 * 26 25 2 28 28 C 1.54591 * 102.91909 * 322.59024 * 27 26 25 29 29 C 1.47904 * 111.00128 * 63.61000 * 25 2 1 30 30 H 1.09003 * 109.47100 * 307.13322 * 1 2 3 31 31 H 1.08999 * 109.47494 * 67.14172 * 1 2 3 32 32 H 1.09006 * 109.46825 * 187.14222 * 1 2 3 33 33 H 1.09004 * 109.47295 * 183.37136 * 3 2 1 34 34 H 1.09001 * 109.46799 * 303.37197 * 3 2 1 35 35 H 1.09004 * 109.46934 * 63.36943 * 3 2 1 36 36 H 0.97004 * 119.99560 * 4.79292 * 6 4 2 37 37 H 1.09004 * 113.58435 * 204.34252 * 9 7 6 38 38 H 1.08999 * 113.58139 * 335.13748 * 9 7 6 39 39 H 0.97000 * 120.00201 * 72.22758 * 12 10 9 40 40 H 0.96997 * 120.00134 * 179.97438 * 16 15 13 41 41 H 1.09003 * 113.66373 * 323.85621 * 22 21 7 42 42 H 1.09006 * 113.66398 * 94.90765 * 22 21 7 43 43 H 1.08999 * 113.58519 * 270.13167 * 23 22 21 44 44 H 1.08995 * 113.65484 * 139.34267 * 23 22 21 45 45 H 1.09003 * 113.66212 * 265.09368 * 24 21 7 46 46 H 1.09002 * 113.66584 * 36.05076 * 24 21 7 47 47 H 1.09001 * 110.67217 * 278.15723 * 26 25 2 48 48 H 1.08998 * 110.66562 * 41.28528 * 26 25 2 49 49 H 1.09003 * 110.72613 * 204.23013 * 27 26 25 50 50 H 1.09004 * 110.72305 * 80.94400 * 27 26 25 51 51 H 1.09007 * 110.30505 * 263.03547 * 28 27 26 52 52 H 1.09002 * 110.39044 * 140.91722 * 28 27 26 53 53 H 1.08996 * 109.91234 * 333.50881 * 29 25 2 54 54 H 1.09000 * 109.91392 * 94.60712 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 1.3361 -0.7723 -2.2216 6 7 3.2553 -1.2769 -1.2295 7 6 3.7863 -1.8753 -2.4566 8 1 3.0047 -2.1728 -3.1559 9 6 4.9182 -1.0566 -3.1037 10 6 5.9004 -1.8689 -2.2401 11 1 6.8086 -2.1605 -2.7675 12 7 6.1696 -1.2694 -0.9307 13 6 7.3833 -0.6867 -0.6810 14 1 8.1420 -0.6686 -1.4493 15 6 7.6381 -0.1182 0.5596 16 7 6.7133 -0.1398 1.4958 17 14 9.2935 0.6773 0.9001 18 1 10.1516 0.5710 -0.3072 19 1 9.0940 2.1090 1.2405 20 1 9.9508 -0.0149 2.0377 21 6 4.8322 -2.9624 -2.2066 22 6 4.9288 -4.1901 -3.1129 23 6 5.4556 -4.9498 -1.8820 24 6 4.7132 -3.9153 -1.0167 25 7 2.0197 -0.6924 1.1994 26 6 1.4248 -0.1110 2.4299 27 6 1.6078 -1.2369 3.4785 28 6 1.3591 -2.5208 2.6540 29 6 1.6177 -2.1158 1.1910 30 1 -0.3633 0.6204 0.8193 31 1 -0.3634 0.3992 -0.9469 32 1 -0.3633 -1.0198 0.1278 33 1 3.1283 1.4432 -0.0604 34 1 1.6280 1.9735 -0.8582 35 1 1.7267 1.9387 0.9187 36 1 3.7838 -1.2883 -0.4162 37 1 5.0284 -1.2344 -4.1735 38 1 4.8891 0.0033 -2.8510 39 1 5.4880 -1.2854 -0.2407 40 1 6.8914 0.2570 2.3628 41 1 3.9627 -4.5489 -3.4680 42 1 5.6638 -4.0877 -3.9114 43 1 6.5397 -4.9097 -1.7757 44 1 5.0589 -5.9608 -1.7893 45 1 5.2760 -3.5933 -0.1404 46 1 3.6864 -4.1955 -0.7815 47 1 1.9646 0.7867 2.7312 48 1 0.3674 0.1069 2.2801 49 1 0.8725 -1.1432 4.2776 50 1 2.6205 -1.2276 3.8816 51 1 0.3292 -2.8560 2.7773 52 1 2.0509 -3.3067 2.9570 53 1 0.7076 -2.2411 0.6045 54 1 2.4176 -2.7249 0.7698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078700995.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:42 Heat of formation + Delta-G solvation = 17.630040 kcal Electronic energy + Delta-G solvation = -32440.942043 eV Core-core repulsion = 28606.918994 eV Total energy + Delta-G solvation = -3834.023049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.16857 -41.11034 -39.20041 -36.64086 -35.36525 -35.25090 -33.64270 -31.66279 -30.30633 -29.75670 -28.27889 -26.75749 -26.53994 -25.48292 -25.04726 -23.63147 -22.36576 -21.62588 -21.41373 -20.47617 -19.39191 -18.65707 -18.32414 -17.13268 -16.87045 -16.66974 -16.51751 -16.21646 -16.01428 -15.82691 -15.30695 -15.10664 -14.78754 -14.62490 -14.35915 -14.19549 -13.83998 -13.49084 -13.37970 -13.25993 -13.16478 -13.09927 -12.98845 -12.83298 -12.69065 -12.64341 -12.49720 -12.47889 -12.31377 -12.10226 -12.06172 -11.91796 -11.90789 -11.78980 -11.30823 -11.26442 -11.14788 -10.86678 -10.67578 -10.60953 -9.78894 -9.31775 -8.93771 -7.86883 -5.15561 1.48442 1.49964 1.55297 1.58313 2.19882 2.58594 2.89251 3.40979 3.42513 3.49547 3.70637 3.75658 3.80185 3.89795 3.95140 3.99954 4.00846 4.06520 4.09890 4.21267 4.31161 4.34770 4.56703 4.57413 4.58602 4.61256 4.67407 4.70451 4.77141 4.81480 4.82805 4.87214 4.91291 4.94164 4.99987 5.01205 5.08480 5.11677 5.12934 5.14151 5.18933 5.23078 5.27035 5.29723 5.37155 5.57369 5.60150 5.62941 5.73065 5.94426 5.98093 6.33112 6.64821 7.24672 7.40696 8.13851 8.38576 9.33827 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.008629 B = 0.005491 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.095281 B = 5097.708642 C = 6473.385976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.086 3.914 3 C -0.128 4.128 4 C 0.525 3.475 5 O -0.584 6.584 6 N -0.685 5.685 7 C 0.132 3.868 8 H 0.090 0.910 9 C -0.179 4.179 10 C 0.177 3.823 11 H 0.063 0.937 12 N -0.707 5.707 13 C -0.246 4.246 14 H 0.072 0.928 15 C -0.061 4.061 16 N -0.948 5.948 17 Si 0.963 3.037 18 H -0.272 1.272 19 H -0.298 1.298 20 H -0.295 1.295 21 C -0.120 4.120 22 C -0.093 4.093 23 C -0.126 4.126 24 C -0.124 4.124 25 N -0.515 5.515 26 C 0.031 3.969 27 C -0.118 4.118 28 C -0.122 4.122 29 C 0.025 3.975 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.411 0.589 37 H 0.102 0.898 38 H 0.041 0.959 39 H 0.376 0.624 40 H 0.250 0.750 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.045 0.955 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.059 0.941 51 H 0.085 0.915 52 H 0.069 0.931 53 H 0.049 0.951 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 -5.701 -0.675 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.007 4.007 3 C -0.186 4.186 4 C 0.312 3.688 5 O -0.464 6.464 6 N -0.335 5.335 7 C 0.027 3.973 8 H 0.108 0.892 9 C -0.220 4.220 10 C 0.066 3.934 11 H 0.081 0.919 12 N -0.347 5.347 13 C -0.378 4.378 14 H 0.090 0.910 15 C -0.255 4.255 16 N -0.597 5.597 17 Si 0.793 3.207 18 H -0.196 1.196 19 H -0.225 1.225 20 H -0.222 1.222 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.163 4.163 24 C -0.161 4.161 25 N -0.240 5.240 26 C -0.096 4.096 27 C -0.156 4.156 28 C -0.160 4.160 29 C -0.102 4.102 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.250 0.750 37 H 0.120 0.880 38 H 0.060 0.940 39 H 0.211 0.789 40 H 0.059 0.941 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.064 0.936 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.090 0.910 49 H 0.113 0.887 50 H 0.077 0.923 51 H 0.104 0.896 52 H 0.088 0.912 53 H 0.067 0.933 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.457 -5.612 -1.382 13.733 hybrid contribution 0.400 0.793 0.799 1.195 sum -12.058 -4.819 -0.582 12.998 Atomic orbital electron populations 1.22247 0.93005 1.02984 1.03694 1.21346 0.95366 0.95479 0.88531 1.21722 1.00957 0.92495 1.03455 1.20754 0.81089 0.77585 0.89375 1.90607 1.57757 1.61398 1.36682 1.45856 1.17366 1.56631 1.13646 1.21700 0.94354 0.94415 0.86879 0.89161 1.24219 0.98395 0.98885 1.00539 1.21053 0.94356 0.91191 0.86767 0.91852 1.42193 1.14755 1.67033 1.10675 1.19566 0.92346 1.28749 0.97159 0.91040 1.25382 1.00737 1.02813 0.96562 1.69801 1.34204 1.51057 1.04641 0.85240 0.80544 0.77408 0.77488 1.19646 1.22504 1.22211 1.23439 0.95988 0.93198 0.99576 1.22537 1.02296 0.92108 0.96185 1.22705 0.99846 0.98062 0.95736 1.22516 1.00146 0.96876 0.96593 1.64983 1.55449 1.02321 1.01295 1.23401 0.98817 0.98574 0.88815 1.22444 1.02296 0.93396 0.97439 1.22332 1.02473 0.98392 0.92765 1.22991 0.99146 0.89496 0.98592 0.89123 0.91626 0.91979 0.93823 0.91519 0.89354 0.75011 0.87969 0.94042 0.78877 0.94131 0.88385 0.90087 0.91059 0.89774 0.93620 0.90215 0.90356 0.91016 0.88659 0.92257 0.89642 0.91223 0.93293 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 7.31 71.98 0.53 -3.44 16 2 C 0.09 2.58 0.63 2.78 0.00 2.58 16 3 C -0.13 -3.87 8.50 71.98 0.61 -3.26 16 4 C 0.53 19.00 5.69 87.66 0.50 19.50 16 5 O -0.58 -23.52 15.52 -3.06 -0.05 -23.57 16 6 N -0.68 -25.29 4.26 -441.15 -1.88 -27.17 16 7 C 0.13 4.61 4.15 45.28 0.19 4.80 16 8 H 0.09 3.14 7.42 -2.38 -0.02 3.12 16 9 C -0.18 -6.55 7.69 31.23 0.24 -6.31 16 10 C 0.18 6.96 4.36 45.28 0.20 7.16 16 11 H 0.06 2.48 8.10 -2.39 -0.02 2.46 16 12 N -0.71 -34.24 4.74 -321.55 -1.52 -35.77 16 13 C -0.25 -13.32 9.97 84.04 0.84 -12.49 16 14 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 15 C -0.06 -3.39 5.50 84.87 0.47 -2.93 16 16 N -0.95 -55.14 13.06 21.65 0.28 -54.86 16 17 Si 0.96 45.49 29.55 68.60 2.03 47.52 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 20 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 21 C -0.12 -3.84 0.78 -52.32 -0.04 -3.89 16 22 C -0.09 -2.30 7.84 30.88 0.24 -2.06 16 23 C -0.13 -3.27 8.08 31.23 0.25 -3.02 16 24 C -0.12 -3.92 7.27 30.88 0.22 -3.69 16 25 N -0.51 -15.11 4.34 -837.89 -3.64 -18.75 16 26 C 0.03 0.72 5.45 86.65 0.47 1.19 16 27 C -0.12 -2.54 7.06 31.80 0.22 -2.31 16 28 C -0.12 -2.63 6.93 31.47 0.22 -2.41 16 29 C 0.03 0.69 5.26 86.44 0.46 1.14 16 30 H 0.09 1.76 6.37 -2.39 -0.02 1.74 16 31 H 0.06 1.75 7.60 -2.39 -0.02 1.73 16 32 H 0.06 1.51 5.98 -2.38 -0.01 1.49 16 33 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 2.22 6.96 -2.38 -0.02 2.20 16 36 H 0.41 16.73 5.12 -92.71 -0.48 16.25 16 37 H 0.10 3.16 8.14 -2.38 -0.02 3.14 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 39 H 0.38 19.20 5.14 -92.71 -0.48 18.73 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.04 1.77 7.58 -2.39 -0.02 1.75 16 46 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.08 1.95 7.62 -2.39 -0.02 1.94 16 48 H 0.07 1.38 5.58 -2.39 -0.01 1.37 16 49 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 51 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 52 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 53 H 0.05 1.29 5.59 -2.39 -0.01 1.28 16 54 H 0.06 1.86 7.53 -2.39 -0.02 1.84 16 Total: -1.00 -63.66 403.85 0.78 -62.88 By element: Atomic # 1 Polarization: 59.19 SS G_CDS: -0.06 Total: 59.13 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 5.62 Total: -9.42 kcal Atomic # 7 Polarization: -129.79 SS G_CDS: -6.76 Total: -136.54 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -63.66 0.78 -62.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078700995.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.513 kcal (2) G-P(sol) polarization free energy of solvation -63.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds