Wall clock time and date at job start Tue Mar 31 2020 19:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46966 * 2 1 4 4 N 1.46903 * 109.47120 * 174.56961 * 3 2 1 5 5 C 1.47441 * 111.00108 * 54.90837 * 4 3 2 6 6 C 1.54316 * 107.23694 * 123.25614 * 5 4 3 7 7 C 1.55144 * 103.01578 * 22.28712 * 6 5 4 8 8 C 1.47841 * 111.00087 * 175.75035 * 4 3 2 9 9 H 1.09002 * 110.37673 * 332.58149 * 8 4 3 10 10 C 1.50700 * 110.37428 * 94.80707 * 8 4 3 11 11 O 1.21285 * 119.99763 * 15.55626 * 10 8 4 12 12 N 1.34774 * 120.00200 * 195.55701 * 10 8 4 13 13 C 1.44761 * 117.18604 * 174.91309 * 12 10 8 14 14 C 1.51483 * 111.70296 * 213.75479 * 13 12 10 15 15 C 1.49447 * 114.08819 * 317.16477 * 14 13 12 16 16 H 1.08999 * 107.68510 * 165.93204 * 15 14 13 17 17 C 1.54529 * 112.95993 * 284.25720 * 15 14 13 18 18 C 1.55246 * 100.53876 * 166.30820 * 17 15 14 19 19 N 1.47472 * 105.06094 * 323.80729 * 18 17 15 20 20 C 1.36941 * 125.66410 * 200.93681 * 19 18 17 21 21 H 1.07996 * 119.99411 * 180.30304 * 20 19 18 22 22 C 1.38808 * 120.00101 * 0.02562 * 20 19 18 23 23 N 1.31621 * 119.99966 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00051 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46985 * 60.00325 * 24 22 20 26 26 H 1.48498 * 109.47130 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46899 * 300.00511 * 24 22 20 28 28 C 1.48280 * 108.66613 * 21.19943 * 19 18 17 29 29 H 1.09010 * 109.26130 * 121.13333 * 28 19 18 30 30 C 1.43778 * 117.18533 * 354.93107 * 12 10 8 31 31 H 1.09000 * 109.47507 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47501 * 299.99979 * 1 2 3 33 33 H 1.09002 * 109.47001 * 60.00092 * 1 2 3 34 34 H 1.08997 * 109.47127 * 239.99710 * 2 1 3 35 35 H 1.08995 * 109.46847 * 119.99588 * 2 1 3 36 36 H 1.08998 * 109.47713 * 54.57120 * 3 2 1 37 37 H 1.09002 * 109.47585 * 294.56702 * 3 2 1 38 38 H 1.08997 * 109.88854 * 242.66527 * 5 4 3 39 39 H 1.09002 * 109.88768 * 3.68785 * 5 4 3 40 40 H 1.08999 * 110.70910 * 140.66435 * 6 5 4 41 41 H 1.09004 * 110.70903 * 263.73029 * 6 5 4 42 42 H 1.08999 * 110.99127 * 206.25654 * 7 6 5 43 43 H 1.08997 * 110.99548 * 82.43584 * 7 6 5 44 44 H 1.09002 * 109.03387 * 93.18503 * 13 12 10 45 45 H 1.09000 * 109.02897 * 334.33178 * 13 12 10 46 46 H 1.08999 * 108.56500 * 195.96633 * 14 13 12 47 47 H 1.09009 * 108.43905 * 78.26572 * 14 13 12 48 48 H 1.08995 * 111.20027 * 48.48450 * 17 15 14 49 49 H 1.08995 * 111.19752 * 284.12876 * 17 15 14 50 50 H 1.09003 * 110.32643 * 204.91038 * 18 17 15 51 51 H 1.09006 * 110.40798 * 82.74893 * 18 17 15 52 52 H 0.97000 * 120.00142 * 179.97438 * 23 22 20 53 53 H 1.09005 * 108.06300 * 279.09961 * 30 12 10 54 54 H 1.09006 * 108.05606 * 35.62460 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5031 1.4446 0.1311 5 6 4.1288 0.6189 -0.9180 6 6 5.1181 1.5234 -1.6826 7 6 5.4157 2.6551 -0.6639 8 6 4.0418 2.8179 0.0331 9 1 3.3812 3.4428 -0.5678 10 6 4.2177 3.4117 1.4070 11 8 4.2012 2.6940 2.3845 12 7 4.3932 4.7404 1.5494 13 6 4.4427 5.2600 2.8996 14 6 3.8375 6.6458 2.9891 15 6 4.2287 7.5556 1.8699 16 1 3.5574 8.4140 1.8909 17 6 5.6701 8.0954 2.0076 18 6 5.8945 8.6723 0.5839 19 7 5.1927 7.7432 -0.3211 20 6 5.4331 7.6000 -1.6616 21 1 4.8588 6.8919 -2.2405 22 6 6.4108 8.3691 -2.2774 23 7 7.1073 9.2357 -1.5728 24 14 6.7383 8.1744 -4.1062 25 1 5.5023 8.4895 -4.8666 26 1 7.8225 9.1024 -4.5165 27 1 7.1506 6.7760 -4.3890 28 6 4.1792 6.9943 0.4603 29 1 3.1921 7.1728 0.0336 30 6 4.5147 5.5195 0.3472 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 1.5994 1.9837 0.8373 37 1 1.7582 1.9275 -0.9346 38 1 4.6639 -0.2150 -0.4637 39 1 3.3649 0.2425 -1.5985 40 1 6.0287 0.9772 -1.9286 41 1 4.6555 1.9248 -2.5843 42 1 5.7058 3.5735 -1.1742 43 1 6.1810 2.3477 0.0488 44 1 5.4818 5.3042 3.2257 45 1 3.8928 4.5886 3.5592 46 1 4.1479 7.0999 3.9301 47 1 2.7518 6.5483 2.9936 48 1 6.3735 7.2909 2.2222 49 1 5.7272 8.8783 2.7637 50 1 6.9586 8.6981 0.3491 51 1 5.4662 9.6717 0.5069 52 1 7.7908 9.7729 -2.0030 53 1 5.5406 5.4311 -0.0106 54 1 3.8583 5.0834 -0.4059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084953314.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:56 Heat of formation + Delta-G solvation = -12.466899 kcal Electronic energy + Delta-G solvation = -31519.016423 eV Core-core repulsion = 27683.688273 eV Total energy + Delta-G solvation = -3835.328150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.93108 -40.31779 -39.07843 -36.62545 -35.54659 -34.89881 -33.41875 -31.69846 -31.04906 -30.62031 -29.77533 -26.62561 -26.38698 -25.57512 -24.42569 -23.19127 -22.87640 -22.10603 -21.06470 -20.52661 -19.00914 -18.75563 -18.48135 -17.27725 -17.11724 -16.87157 -16.52647 -16.27276 -16.08549 -15.66559 -15.59801 -15.11761 -14.90731 -14.49121 -14.29251 -14.18098 -13.97397 -13.77078 -13.69344 -13.51870 -13.42994 -13.22672 -12.89345 -12.77356 -12.71325 -12.65318 -12.48868 -12.45271 -12.23431 -12.09909 -12.03191 -11.79044 -11.71992 -11.60861 -11.53857 -11.44130 -11.28841 -11.11321 -10.73848 -10.65777 -9.51209 -9.26577 -8.90232 -7.74969 -5.17635 1.49000 1.50755 1.56882 1.58221 1.98099 2.50574 2.92692 3.36044 3.38619 3.58464 3.61258 3.67258 3.81008 3.88993 3.89938 4.03941 4.05928 4.11221 4.13353 4.20534 4.25790 4.42092 4.44144 4.44631 4.50592 4.51741 4.67201 4.72389 4.75150 4.77409 4.83880 4.86221 4.89620 4.90660 4.94855 5.01578 5.02906 5.09239 5.15101 5.17280 5.23120 5.31329 5.35286 5.37509 5.47229 5.52745 5.69029 5.73600 5.84608 5.87691 6.09341 6.29782 6.39825 7.12196 7.22551 7.79398 8.44111 9.28391 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.011158 B = 0.004008 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.703533 B = 6985.111757 C = 8597.297356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.053 3.947 4 N -0.527 5.527 5 C 0.043 3.957 6 C -0.133 4.133 7 C -0.118 4.118 8 C 0.057 3.943 9 H 0.083 0.917 10 C 0.512 3.488 11 O -0.558 6.558 12 N -0.591 5.591 13 C 0.119 3.881 14 C -0.101 4.101 15 C -0.083 4.083 16 H 0.069 0.931 17 C -0.125 4.125 18 C 0.160 3.840 19 N -0.614 5.614 20 C -0.229 4.229 21 H 0.085 0.915 22 C -0.063 4.063 23 N -0.949 5.949 24 Si 0.971 3.029 25 H -0.279 1.279 26 H -0.300 1.300 27 H -0.274 1.274 28 C 0.158 3.842 29 H 0.040 0.960 30 C 0.117 3.883 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.083 0.917 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.085 0.915 50 H 0.060 0.940 51 H -0.011 1.011 52 H 0.245 0.755 53 H 0.048 0.952 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.749 -14.407 3.773 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.075 4.075 4 N -0.251 5.251 5 C -0.084 4.084 6 C -0.171 4.171 7 C -0.156 4.156 8 C -0.054 4.054 9 H 0.100 0.900 10 C 0.300 3.700 11 O -0.436 6.436 12 N -0.324 5.324 13 C -0.004 4.004 14 C -0.139 4.139 15 C -0.102 4.102 16 H 0.088 0.912 17 C -0.163 4.163 18 C 0.035 3.965 19 N -0.339 5.339 20 C -0.358 4.358 21 H 0.103 0.897 22 C -0.256 4.256 23 N -0.599 5.599 24 Si 0.800 3.200 25 H -0.205 1.205 26 H -0.226 1.226 27 H -0.200 1.200 28 C 0.051 3.949 29 H 0.058 0.942 30 C -0.008 4.008 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.121 0.879 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.104 0.896 50 H 0.078 0.922 51 H 0.007 0.993 52 H 0.054 0.946 53 H 0.066 0.934 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.524 -14.839 4.609 18.225 hybrid contribution 0.330 1.011 -1.813 2.102 sum -9.194 -13.828 2.796 16.839 Atomic orbital electron populations 1.21712 0.94431 1.02484 1.01912 1.21556 0.96491 0.94726 1.02606 1.22351 0.86647 0.98699 0.99806 1.63129 1.05982 1.07844 1.48181 1.22937 0.97253 0.96325 0.91842 1.22788 1.00770 0.95934 0.97627 1.22630 0.94290 1.00549 0.98141 1.22503 0.98648 0.91588 0.92682 0.89963 1.20849 0.75778 0.81825 0.91559 1.90610 1.51306 1.60250 1.41440 1.46827 1.71464 1.06895 1.07210 1.20739 1.01084 0.95930 0.82613 1.20590 1.01408 0.93026 0.98914 1.20599 0.97711 0.98682 0.93258 0.91248 1.22877 0.95892 1.00038 0.97485 1.21616 0.97985 0.89932 0.86956 1.45224 1.40036 1.43824 1.04861 1.19338 1.14861 1.17804 0.83826 0.89697 1.25537 0.99297 0.98869 1.01907 1.70102 1.26572 1.28036 1.35168 0.85261 0.77089 0.77361 0.80315 1.20545 1.22608 1.20009 1.20543 0.92216 0.89706 0.92392 0.94241 1.21306 1.01132 0.93403 0.84977 0.91368 0.93102 0.92275 0.90712 0.92146 0.92565 0.94152 0.90291 0.90311 0.88905 0.90185 0.90162 0.91571 0.93066 0.89830 0.87893 0.90767 0.92504 0.89611 0.92158 0.99341 0.94585 0.93361 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 71.98 0.71 -1.44 16 2 C -0.12 -2.05 5.59 30.59 0.17 -1.88 16 3 C 0.05 1.17 4.83 86.30 0.42 1.59 16 4 N -0.53 -13.58 4.50 -864.99 -3.89 -17.47 16 5 C 0.04 0.87 6.20 86.65 0.54 1.41 16 6 C -0.13 -2.66 6.94 31.78 0.22 -2.44 16 7 C -0.12 -3.10 6.08 31.98 0.19 -2.91 16 8 C 0.06 1.61 1.92 44.64 0.09 1.69 16 9 H 0.08 2.23 5.97 -2.39 -0.01 2.21 16 10 C 0.51 17.02 6.86 87.66 0.60 17.62 16 11 O -0.56 -21.64 15.81 -3.05 -0.05 -21.69 16 12 N -0.59 -18.92 3.12 -838.33 -2.62 -21.53 16 13 C 0.12 3.40 6.07 86.21 0.52 3.93 16 14 C -0.10 -2.50 5.44 28.96 0.16 -2.34 16 15 C -0.08 -2.62 2.43 -11.80 -0.03 -2.65 16 16 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 17 C -0.12 -4.38 6.54 31.89 0.21 -4.17 16 18 C 0.16 7.57 5.76 86.96 0.50 8.07 16 19 N -0.61 -29.25 2.94 -671.47 -1.97 -31.22 16 20 C -0.23 -11.90 9.64 84.03 0.81 -11.09 16 21 H 0.09 4.13 7.83 -2.91 -0.02 4.11 16 22 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 23 N -0.95 -54.98 10.15 21.65 0.22 -54.76 16 24 Si 0.97 43.74 29.55 68.60 2.03 45.76 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 C 0.16 5.94 3.47 43.82 0.15 6.09 16 29 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 30 C 0.12 4.04 4.64 86.45 0.40 4.44 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.13 6.40 -2.39 -0.02 1.11 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 0.83 7.99 -2.39 -0.02 0.81 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.28 5.99 -2.39 -0.01 1.27 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 2.27 7.21 -2.39 -0.02 2.25 16 43 H 0.07 1.91 8.05 -2.39 -0.02 1.89 16 44 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 45 H 0.08 2.40 7.08 -2.39 -0.02 2.39 16 46 H 0.10 2.05 8.09 -2.39 -0.02 2.03 16 47 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.06 2.03 8.08 -2.39 -0.02 2.02 16 49 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 50 H 0.06 3.30 6.09 -2.39 -0.01 3.29 16 51 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 52 H 0.24 13.96 8.31 -92.71 -0.77 13.18 16 53 H 0.05 1.94 6.89 -2.38 -0.02 1.92 16 54 H 0.07 2.16 5.71 -2.38 -0.01 2.15 16 Total: -1.00 -65.49 398.87 0.70 -64.79 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.86 Total: 23.17 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 6.13 Total: 12.96 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -8.26 Total: -124.99 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.69 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -65.49 0.70 -64.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084953314.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.322 kcal (2) G-P(sol) polarization free energy of solvation -65.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds