Wall clock time and date at job start Tue Mar 31 2020 19:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47029 * 2 1 4 4 N 1.46900 * 109.47106 * 179.97438 * 3 2 1 5 5 C 1.48529 * 111.00554 * 287.39908 * 4 3 2 6 6 C 1.54934 * 103.22912 * 200.27949 * 5 4 3 7 7 C 1.54597 * 102.92105 * 37.41269 * 6 5 4 8 8 C 1.47907 * 110.99845 * 170.00071 * 4 3 2 9 9 H 1.08996 * 110.08289 * 26.40198 * 8 4 3 10 10 C 1.50702 * 109.91371 * 265.19809 * 8 4 3 11 11 O 1.21271 * 120.00663 * 0.95772 * 10 8 4 12 12 N 1.34782 * 119.99325 * 180.95412 * 10 8 4 13 13 C 1.47146 * 121.21708 * 359.72752 * 12 10 8 14 14 C 1.53333 * 107.71840 * 122.68608 * 13 12 10 15 15 C 1.53092 * 110.49859 * 57.57102 * 14 13 12 16 16 H 1.08997 * 113.06017 * 70.86840 * 15 14 13 17 17 C 1.56030 * 106.39312 * 195.29183 * 15 14 13 18 18 C 1.54499 * 102.61049 * 78.38247 * 17 15 14 19 19 N 1.47428 * 107.15124 * 22.84447 * 18 17 15 20 20 C 1.36943 * 126.06266 * 181.59469 * 19 18 17 21 21 H 1.07997 * 120.00324 * 180.02562 * 20 19 18 22 22 C 1.38804 * 119.99725 * 0.03452 * 20 19 18 23 23 N 1.31624 * 120.00337 * 0.02562 * 22 20 19 24 24 Si 1.86810 * 119.99999 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46728 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46901 * 119.99831 * 24 22 20 27 27 H 1.48494 * 109.46955 * 239.99983 * 24 22 20 28 28 C 1.46466 * 107.88119 * 1.62061 * 19 18 17 29 29 H 1.09010 * 108.41697 * 89.23664 * 28 19 18 30 30 C 1.46755 * 121.21057 * 180.02562 * 12 10 8 31 31 H 1.08997 * 109.47254 * 59.99819 * 1 2 3 32 32 H 1.08997 * 109.46924 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46926 * 299.99950 * 1 2 3 34 34 H 1.08998 * 109.47405 * 240.00649 * 2 1 3 35 35 H 1.09000 * 109.47740 * 120.00082 * 2 1 3 36 36 H 1.08996 * 109.47226 * 60.00233 * 3 2 1 37 37 H 1.08997 * 109.47251 * 300.00183 * 3 2 1 38 38 H 1.09002 * 110.67056 * 81.84058 * 5 4 3 39 39 H 1.08999 * 110.66437 * 318.71748 * 5 4 3 40 40 H 1.09000 * 110.72047 * 279.05575 * 6 5 4 41 41 H 1.09001 * 110.72140 * 155.77197 * 6 5 4 42 42 H 1.09005 * 110.30714 * 96.95804 * 7 6 5 43 43 H 1.09005 * 110.30628 * 219.12370 * 7 6 5 44 44 H 1.09007 * 109.76021 * 242.33674 * 13 12 10 45 45 H 1.09005 * 109.76112 * 3.08926 * 13 12 10 46 46 H 1.08995 * 109.39387 * 297.24378 * 14 13 12 47 47 H 1.08999 * 109.16321 * 177.74492 * 14 13 12 48 48 H 1.08997 * 110.78590 * 320.09765 * 17 15 14 49 49 H 1.08999 * 110.94034 * 196.73680 * 17 15 14 50 50 H 1.08999 * 109.90499 * 263.45696 * 18 17 15 51 51 H 1.09004 * 109.90237 * 142.22270 * 18 17 15 52 52 H 0.97003 * 120.00018 * 179.97438 * 23 22 20 53 53 H 1.09000 * 109.23214 * 352.83576 * 30 12 10 54 54 H 1.09001 * 109.22810 * 112.19983 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0408 1.0281 1.3241 6 6 5.4887 1.5797 1.3128 7 6 5.3380 2.9314 0.5779 8 6 4.0391 2.8024 -0.2391 9 1 3.3170 3.5492 0.0910 10 6 4.3344 2.9871 -1.7053 11 8 4.1111 2.0872 -2.4870 12 7 4.8465 4.1526 -2.1479 13 6 5.1221 5.2642 -1.2240 14 6 6.6074 5.6219 -1.3541 15 6 6.9460 5.9874 -2.8017 16 1 6.5251 6.9444 -3.1101 17 6 8.5017 5.9451 -2.9142 18 6 8.7911 4.4312 -3.0214 19 7 7.5620 3.7879 -3.5205 20 6 7.3818 2.4465 -3.7291 21 1 6.4360 2.0799 -4.0996 22 6 8.4148 1.5581 -3.4642 23 7 9.5674 2.0048 -3.0120 24 14 8.1694 -0.2717 -3.7495 25 1 6.7951 -0.5134 -4.2577 26 1 9.1576 -0.7540 -4.7475 27 1 8.3604 -1.0020 -2.4707 28 6 6.5679 4.8379 -3.7542 29 1 6.6825 5.1994 -4.7762 30 6 5.1436 4.3616 -3.5698 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.6767 1.9564 0.8900 37 1 1.6766 1.9564 -0.8899 38 1 4.0436 -0.0581 1.4146 39 1 3.4629 1.4808 2.1298 40 1 6.1512 0.9125 0.7614 41 1 5.8514 1.7316 2.3294 42 1 5.2530 3.7458 1.2974 43 1 6.1870 3.0982 -0.0851 44 1 4.5083 6.1250 -1.4897 45 1 4.9034 4.9565 -0.2015 46 1 7.2132 4.7692 -1.0475 47 1 6.8289 6.4711 -0.7078 48 1 8.9656 6.3653 -2.0219 49 1 8.8420 6.4681 -3.8079 50 1 9.0467 4.0318 -2.0400 51 1 9.6100 4.2585 -3.7198 52 1 10.2892 1.3838 -2.8265 53 1 5.0066 3.4230 -4.1069 54 1 4.4600 5.1084 -3.9734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084953315.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:00 Heat of formation + Delta-G solvation = -18.171467 kcal Electronic energy + Delta-G solvation = -32481.650621 eV Core-core repulsion = 28646.075102 eV Total energy + Delta-G solvation = -3835.575519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.65980 -40.21896 -38.70742 -36.52608 -35.44341 -34.61577 -32.86476 -31.76141 -31.38975 -30.05735 -29.62664 -26.56870 -26.38920 -25.56012 -23.85824 -23.13875 -22.56866 -21.72802 -21.58534 -20.82981 -19.47518 -18.42601 -18.05479 -17.27072 -16.98840 -16.72673 -16.18002 -16.06831 -15.80525 -15.76059 -15.41141 -15.05191 -14.71281 -14.40160 -14.28123 -14.18317 -13.94786 -13.82263 -13.70064 -13.45314 -13.19925 -13.05959 -12.93856 -12.68918 -12.67408 -12.60471 -12.43398 -12.29869 -12.23352 -12.07308 -12.01236 -11.83760 -11.74476 -11.63997 -11.50583 -11.36288 -11.20166 -11.05512 -10.66761 -10.54608 -9.39711 -9.27882 -8.78069 -7.83940 -5.12348 1.31645 1.34470 1.46895 1.82987 2.16296 2.47070 3.01257 3.35223 3.48184 3.60436 3.63782 3.87819 3.89573 3.94418 3.99454 4.08959 4.16116 4.18085 4.24148 4.34557 4.44717 4.47025 4.51772 4.54048 4.58493 4.63816 4.66693 4.71052 4.72738 4.76771 4.83745 4.88381 4.89205 4.93482 4.97936 5.05387 5.10672 5.15624 5.18194 5.19580 5.25229 5.30030 5.35456 5.39352 5.55133 5.69884 5.74198 5.76374 5.83903 5.92988 6.15340 6.24518 6.71035 7.17108 7.49647 7.84913 8.47103 9.26723 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.010962 B = 0.005074 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.743101 B = 5517.124971 C = 6666.956814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.058 3.942 4 N -0.532 5.532 5 C 0.045 3.955 6 C -0.124 4.124 7 C -0.117 4.117 8 C 0.063 3.937 9 H 0.103 0.897 10 C 0.514 3.486 11 O -0.576 6.576 12 N -0.600 5.600 13 C 0.104 3.896 14 C -0.118 4.118 15 C -0.084 4.084 16 H 0.122 0.878 17 C -0.130 4.130 18 C 0.188 3.812 19 N -0.603 5.603 20 C -0.194 4.194 21 H 0.060 0.940 22 C -0.058 4.058 23 N -0.946 5.946 24 Si 0.948 3.052 25 H -0.288 1.288 26 H -0.288 1.288 27 H -0.296 1.296 28 C 0.142 3.858 29 H 0.022 0.978 30 C 0.120 3.880 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.035 0.965 41 H 0.104 0.896 42 H 0.116 0.884 43 H 0.048 0.952 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.037 0.963 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.065 0.935 50 H 0.009 0.991 51 H -0.004 1.004 52 H 0.241 0.759 53 H 0.044 0.956 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.838 10.693 13.204 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.070 4.070 4 N -0.257 5.257 5 C -0.081 4.081 6 C -0.162 4.162 7 C -0.155 4.155 8 C -0.049 4.049 9 H 0.121 0.879 10 C 0.302 3.698 11 O -0.454 6.454 12 N -0.333 5.333 13 C -0.017 4.017 14 C -0.156 4.156 15 C -0.103 4.103 16 H 0.140 0.860 17 C -0.168 4.168 18 C 0.063 3.937 19 N -0.328 5.328 20 C -0.324 4.324 21 H 0.078 0.922 22 C -0.251 4.251 23 N -0.598 5.598 24 Si 0.780 3.220 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.223 1.223 28 C 0.035 3.965 29 H 0.039 0.961 30 C -0.004 4.004 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.122 0.878 42 H 0.135 0.865 43 H 0.067 0.933 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.056 0.944 47 H 0.121 0.879 48 H 0.101 0.899 49 H 0.084 0.916 50 H 0.027 0.973 51 H 0.014 0.986 52 H 0.051 0.949 53 H 0.063 0.937 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.705 9.649 12.375 21.506 hybrid contribution 0.489 -1.383 -0.423 1.527 sum -14.216 8.266 11.951 20.329 Atomic orbital electron populations 1.21684 0.93914 1.02315 1.02171 1.21423 0.96612 0.95704 1.01593 1.22267 0.86096 0.98046 1.00597 1.64187 1.09189 1.21770 1.30538 1.23264 0.94520 1.01152 0.89208 1.22489 0.96707 0.95792 1.01237 1.22480 0.94939 0.99562 0.98542 1.22232 0.98759 0.92606 0.91294 0.87926 1.21023 0.76561 0.81043 0.91138 1.90634 1.54219 1.41968 1.58558 1.47952 1.62511 1.14359 1.08455 1.22181 0.96358 0.89155 0.94035 1.21888 0.95879 1.01656 0.96211 1.22422 0.95041 0.97651 0.95178 0.86047 1.23034 0.96565 0.95355 1.01853 1.20954 0.87547 0.89616 0.95604 1.44448 1.10592 1.01458 1.76309 1.19014 0.96735 0.82581 1.34036 0.92208 1.25159 0.96437 1.00168 1.03323 1.70132 1.03665 1.32557 1.53401 0.85428 0.76499 0.83222 0.76898 1.21429 1.21454 1.22309 1.21010 0.88892 0.89617 0.96968 0.96101 1.21167 0.96094 1.00739 0.82435 0.93214 0.91932 0.91225 0.94188 0.91357 0.92189 0.92870 0.90318 0.90525 0.94588 0.87760 0.86547 0.93291 0.88175 0.88213 0.94441 0.87950 0.89856 0.91605 0.97312 0.98595 0.94902 0.93693 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.91 71.98 0.71 -1.82 16 2 C -0.12 -2.70 6.03 30.60 0.18 -2.51 16 3 C 0.06 1.42 4.71 86.30 0.41 1.83 16 4 N -0.53 -16.15 4.38 -862.44 -3.78 -19.93 16 5 C 0.05 1.08 5.91 86.65 0.51 1.59 16 6 C -0.12 -3.30 7.06 31.80 0.22 -3.08 16 7 C -0.12 -3.13 4.81 31.47 0.15 -2.98 16 8 C 0.06 1.82 1.98 44.31 0.09 1.91 16 9 H 0.10 2.22 7.53 -2.39 -0.02 2.20 16 10 C 0.51 20.08 6.95 87.66 0.61 20.69 16 11 O -0.58 -29.12 15.92 -3.00 -0.05 -29.17 16 12 N -0.60 -20.36 2.93 -822.07 -2.41 -22.77 16 13 C 0.10 2.37 5.63 86.37 0.49 2.86 16 14 C -0.12 -3.07 5.02 30.74 0.15 -2.92 16 15 C -0.08 -2.41 3.68 -9.38 -0.03 -2.44 16 16 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 17 C -0.13 -4.37 6.33 32.15 0.20 -4.16 16 18 C 0.19 9.19 4.61 86.71 0.40 9.59 16 19 N -0.60 -30.98 3.20 -674.05 -2.15 -33.13 16 20 C -0.19 -11.62 9.70 84.03 0.81 -10.80 16 21 H 0.06 3.82 6.51 -2.91 -0.02 3.80 16 22 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 23 N -0.95 -59.61 10.38 21.65 0.22 -59.38 16 24 Si 0.95 52.33 29.55 68.60 2.03 54.36 16 25 H -0.29 -16.30 7.11 99.48 0.71 -15.59 16 26 H -0.29 -15.37 7.11 99.48 0.71 -14.67 16 27 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 28 C 0.14 5.58 2.97 44.78 0.13 5.71 16 29 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 30 C 0.12 4.50 5.68 85.78 0.49 4.99 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.45 7.37 -2.39 -0.02 1.43 16 36 H 0.06 1.12 7.83 -2.39 -0.02 1.10 16 37 H 0.05 1.50 8.08 -2.39 -0.02 1.48 16 38 H 0.08 1.91 7.80 -2.39 -0.02 1.89 16 39 H 0.08 1.32 7.81 -2.39 -0.02 1.30 16 40 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.12 2.04 7.53 -2.38 -0.02 2.02 16 43 H 0.05 1.76 6.38 -2.38 -0.02 1.75 16 44 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.10 1.85 4.49 -2.38 -0.01 1.84 16 46 H 0.04 1.34 6.06 -2.39 -0.01 1.33 16 47 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.08 2.41 7.97 -2.39 -0.02 2.39 16 49 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.01 0.48 7.04 -2.39 -0.02 0.46 16 51 H 0.00 -0.24 7.57 -2.39 -0.02 -0.26 16 52 H 0.24 14.93 8.31 -92.71 -0.77 14.16 16 53 H 0.04 2.14 5.54 -2.39 -0.01 2.13 16 54 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -83.51 395.66 0.72 -82.79 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.86 Total: 11.93 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 6.00 Total: 15.32 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -8.12 Total: -135.22 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.05 Total: -29.17 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 2.03 Total: 54.36 kcal Total: -83.51 0.72 -82.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084953315.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.621 kcal (2) G-P(sol) polarization free energy of solvation -83.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds