Wall clock time and date at job start Tue Mar 31 2020 19:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46419 * 2 1 4 4 C 1.53032 * 109.46089 * 119.98215 * 2 1 3 5 5 C 1.53105 * 109.28700 * 179.19363 * 4 2 1 6 6 H 1.08997 * 109.57965 * 62.27371 * 5 4 2 7 7 C 1.50701 * 109.52334 * 182.43330 * 5 4 2 8 8 O 1.21283 * 119.99568 * 85.04944 * 7 5 4 9 9 N 1.34776 * 120.00067 * 265.04153 * 7 5 4 10 10 C 1.47148 * 121.21189 * 5.15819 * 9 7 5 11 11 C 1.53333 * 107.71806 * 122.68569 * 10 9 7 12 12 C 1.53097 * 110.49500 * 57.56965 * 11 10 9 13 13 H 1.08999 * 113.05992 * 70.87115 * 12 11 10 14 14 C 1.56031 * 106.39308 * 195.29389 * 12 11 10 15 15 C 1.54501 * 102.61213 * 78.38276 * 14 12 11 16 16 N 1.47435 * 107.15019 * 22.84498 * 15 14 12 17 17 C 1.36936 * 126.05825 * 181.59278 * 16 15 14 18 18 H 1.07999 * 119.99655 * 185.06908 * 17 16 15 19 19 C 1.38808 * 120.00100 * 5.07176 * 17 16 15 20 20 N 1.31613 * 120.00438 * 354.91407 * 19 17 16 21 21 Si 1.86803 * 119.99752 * 174.91601 * 19 17 16 22 22 H 1.48500 * 109.47312 * 95.00080 * 21 19 17 23 23 H 1.48501 * 109.47049 * 214.99998 * 21 19 17 24 24 H 1.48508 * 109.47065 * 334.99675 * 21 19 17 25 25 C 1.46471 * 107.87829 * 1.62473 * 16 15 14 26 26 H 1.08995 * 108.41787 * 89.23605 * 25 16 15 27 27 C 1.46757 * 121.21358 * 185.43223 * 9 7 5 28 28 C 1.53122 * 109.15408 * 302.33793 * 5 4 2 29 29 C 1.53041 * 109.27923 * 57.65300 * 28 5 4 30 30 N 1.46837 * 109.52365 * 300.82320 * 29 28 5 31 31 C 1.46901 * 111.00257 * 185.83921 * 30 29 28 32 32 H 1.08997 * 109.46929 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46474 * 300.00210 * 1 2 3 34 34 H 1.09004 * 109.47306 * 59.99642 * 1 2 3 35 35 H 1.08997 * 109.50567 * 299.11956 * 4 2 1 36 36 H 1.08997 * 109.50554 * 59.24445 * 4 2 1 37 37 H 1.09000 * 109.75971 * 242.33499 * 10 9 7 38 38 H 1.09004 * 109.76171 * 3.09188 * 10 9 7 39 39 H 1.09001 * 109.39533 * 297.24985 * 11 10 9 40 40 H 1.08997 * 109.19850 * 177.76218 * 11 10 9 41 41 H 1.08998 * 110.78090 * 320.09654 * 14 12 11 42 42 H 1.09005 * 110.94305 * 196.73770 * 14 12 11 43 43 H 1.09001 * 109.90192 * 263.45743 * 15 14 12 44 44 H 1.09005 * 109.90268 * 142.22350 * 15 14 12 45 45 H 0.96996 * 120.00745 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.22499 * 352.84232 * 27 9 7 47 47 H 1.09000 * 109.22186 * 112.19694 * 27 9 7 48 48 H 1.09004 * 109.50282 * 297.71311 * 28 5 4 49 49 H 1.08999 * 109.53297 * 177.62048 * 28 5 4 50 50 H 1.09002 * 109.45793 * 180.80375 * 29 28 5 51 51 H 1.08997 * 109.44813 * 60.83003 * 29 28 5 52 52 H 1.09004 * 109.46739 * 295.79497 * 31 30 29 53 53 H 1.09002 * 109.46629 * 55.78637 * 31 30 29 54 54 H 1.08995 * 109.47342 * 175.78750 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2498 5 6 3.5708 -0.7364 1.2357 6 1 3.9466 0.2862 1.2679 7 6 4.0779 -1.4972 2.4336 8 8 4.1826 -2.7046 2.3852 9 7 4.4153 -0.8360 3.5585 10 6 4.1942 0.6131 3.6866 11 6 3.3067 0.8429 4.9156 12 6 3.9619 0.2540 6.1677 13 1 4.8362 0.8158 6.4965 14 6 2.8455 0.1791 7.2552 15 6 2.0525 -1.0797 6.8383 16 7 2.9576 -1.9153 6.0284 17 6 2.6389 -3.1077 5.4353 18 1 3.4025 -3.6807 4.9303 19 6 1.3345 -3.5800 5.4832 20 7 0.4259 -2.9338 6.1825 21 14 0.8687 -5.1327 4.5550 22 1 0.9488 -6.2994 5.4703 23 1 -0.5174 -5.0034 4.0381 24 1 1.8044 -5.3297 3.4187 25 6 4.2584 -1.2444 5.9713 26 1 4.8567 -1.5804 6.8181 27 6 5.0219 -1.5340 4.6981 28 6 4.0546 -1.4192 -0.0467 29 6 3.4864 -0.6780 -1.2591 30 7 2.0193 -0.6918 -1.1994 31 6 1.4374 -0.1105 -2.4166 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.6897 -0.1983 2.1399 36 1 1.6658 -1.7448 1.2574 37 1 5.1494 1.1214 3.8182 38 1 3.6954 0.9902 2.7937 39 1 2.3394 0.3658 4.7579 40 1 3.1599 1.9137 5.0566 41 1 2.2114 1.0650 7.2201 42 1 3.2768 0.0532 8.2483 43 1 1.1838 -0.7918 6.2462 44 1 1.7347 -1.6285 7.7249 45 1 -0.4857 -3.2635 6.2157 46 1 5.0106 -2.6073 4.5089 47 1 6.0535 -1.2017 4.8146 48 1 3.7121 -2.4540 -0.0594 49 1 5.1437 -1.3959 -0.0833 50 1 3.8174 -1.1703 -2.1735 51 1 3.8404 0.3528 -1.2529 52 1 1.7123 0.9421 -2.4838 53 1 1.8165 -0.6415 -3.2898 54 1 0.3518 -0.2010 -2.3793 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085017566.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:41 Heat of formation + Delta-G solvation = -23.471231 kcal Electronic energy + Delta-G solvation = -32488.481026 eV Core-core repulsion = 28652.675692 eV Total energy + Delta-G solvation = -3835.805334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.65462 -40.34036 -39.15272 -36.50571 -34.73774 -34.61849 -33.40164 -32.76354 -30.83688 -30.03967 -28.56233 -27.45863 -26.48705 -25.59665 -24.09876 -23.88506 -22.92046 -21.73802 -21.02346 -20.51321 -19.49530 -18.44234 -18.10082 -17.11023 -16.83327 -16.54452 -16.27757 -16.11606 -16.05117 -15.66940 -15.38137 -15.23327 -14.91594 -14.45254 -14.37226 -14.09994 -14.06950 -13.69974 -13.56294 -13.23033 -13.18764 -13.02573 -12.99947 -12.93919 -12.82087 -12.68564 -12.56963 -12.52653 -12.33112 -12.08224 -12.03790 -11.94558 -11.71641 -11.60469 -11.41496 -11.36755 -11.23830 -11.06414 -10.64833 -10.44098 -9.43521 -9.19742 -8.78965 -7.85374 -5.13296 1.30833 1.33521 1.47230 1.75781 2.21147 2.46400 2.95112 3.33692 3.46200 3.61486 3.75205 3.76255 3.88934 3.92600 4.01217 4.09081 4.15772 4.27949 4.31157 4.35767 4.46745 4.47922 4.52164 4.55129 4.60699 4.62809 4.68262 4.69324 4.74516 4.76331 4.84496 4.86515 4.88391 4.90209 4.94097 5.03371 5.04608 5.08796 5.15910 5.17846 5.18947 5.27591 5.34550 5.39936 5.53379 5.67848 5.72714 5.76912 5.83303 6.17992 6.21848 6.23762 6.64494 7.15908 7.39772 7.83834 8.46503 9.25514 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.005038 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.518991 B = 5556.149543 C = 6551.922170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.095 3.905 3 H 0.065 0.935 4 C -0.092 4.092 5 C -0.093 4.093 6 H 0.120 0.880 7 C 0.512 3.488 8 O -0.590 6.590 9 N -0.598 5.598 10 C 0.106 3.894 11 C -0.118 4.118 12 C -0.084 4.084 13 H 0.123 0.877 14 C -0.130 4.130 15 C 0.185 3.815 16 N -0.604 5.604 17 C -0.194 4.194 18 H 0.061 0.939 19 C -0.058 4.058 20 N -0.946 5.946 21 Si 0.944 3.056 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.141 3.859 26 H 0.023 0.977 27 C 0.117 3.883 28 C -0.098 4.098 29 C 0.067 3.933 30 N -0.565 5.565 31 C 0.025 3.975 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.032 0.968 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.012 0.988 44 H -0.007 1.007 45 H 0.242 0.758 46 H 0.047 0.953 47 H 0.093 0.907 48 H 0.044 0.956 49 H 0.079 0.921 50 H 0.088 0.912 51 H 0.056 0.944 52 H 0.038 0.962 53 H 0.074 0.926 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.075 17.649 -12.519 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 H 0.082 0.918 4 C -0.130 4.130 5 C -0.114 4.114 6 H 0.138 0.862 7 C 0.302 3.698 8 O -0.470 6.470 9 N -0.329 5.329 10 C -0.015 4.015 11 C -0.156 4.156 12 C -0.103 4.103 13 H 0.141 0.859 14 C -0.168 4.168 15 C 0.061 3.939 16 N -0.329 5.329 17 C -0.324 4.324 18 H 0.079 0.921 19 C -0.251 4.251 20 N -0.597 5.597 21 Si 0.775 3.225 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.034 3.966 26 H 0.041 0.959 27 C -0.007 4.007 28 C -0.136 4.136 29 C -0.060 4.060 30 N -0.291 5.291 31 C -0.123 4.123 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.051 0.949 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.030 0.970 44 H 0.011 0.989 45 H 0.051 0.949 46 H 0.065 0.935 47 H 0.111 0.889 48 H 0.063 0.937 49 H 0.097 0.903 50 H 0.107 0.893 51 H 0.074 0.926 52 H 0.057 0.943 53 H 0.093 0.907 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.803 16.388 -12.541 22.062 hybrid contribution -0.737 -1.305 0.121 1.503 sum 7.066 15.084 -12.420 20.777 Atomic orbital electron populations 1.21914 0.93923 1.01815 1.02821 1.21501 0.95690 0.95395 0.88685 0.91772 1.21438 0.93069 1.00279 0.98256 1.21369 0.96733 1.00936 0.92399 0.86181 1.21114 0.76296 0.87461 0.84973 1.90660 1.55533 1.16760 1.84029 1.48021 1.61119 1.09989 1.13778 1.22129 1.01324 0.78812 0.99234 1.21878 0.98212 1.01573 0.93987 1.22428 0.98412 0.94090 0.95343 0.85877 1.23031 0.97813 0.97485 0.98471 1.20980 0.91646 0.89219 0.92096 1.44454 1.08852 1.20789 1.58835 1.18967 0.92808 0.95659 1.24942 0.92086 1.25182 0.96433 1.01411 1.02043 1.70120 1.02138 1.41651 1.45818 0.85544 0.76882 0.81324 0.78738 1.21276 1.21802 1.21716 1.21020 0.87411 0.93507 0.94639 0.95941 1.21212 0.96097 0.97415 0.85983 1.21432 1.00420 0.99299 0.92463 1.22041 0.86599 0.99536 0.97855 1.61843 1.07962 1.56384 1.02926 1.22436 1.00773 0.97775 0.91285 0.93935 0.91891 0.90105 0.91840 0.95021 0.87737 0.88452 0.94867 0.87956 0.89955 0.91495 0.97024 0.98856 0.94862 0.93482 0.88934 0.93727 0.90266 0.89324 0.92629 0.94338 0.90749 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.77 71.98 0.63 -2.70 16 2 C 0.10 2.22 2.44 44.94 0.11 2.33 16 3 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.09 -2.88 4.63 30.64 0.14 -2.74 16 5 C -0.09 -2.66 1.83 -11.46 -0.02 -2.68 16 6 H 0.12 2.46 6.15 -2.39 -0.01 2.45 16 7 C 0.51 19.68 6.71 87.66 0.59 20.27 16 8 O -0.59 -29.44 15.68 -3.04 -0.05 -29.48 16 9 N -0.60 -20.10 2.96 -822.16 -2.43 -22.54 16 10 C 0.11 2.42 6.25 86.37 0.54 2.96 16 11 C -0.12 -3.13 5.06 30.74 0.16 -2.98 16 12 C -0.08 -2.40 3.68 -9.37 -0.03 -2.43 16 13 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 14 C -0.13 -4.37 6.33 32.16 0.20 -4.17 16 15 C 0.19 9.11 4.62 86.71 0.40 9.51 16 16 N -0.60 -31.03 3.20 -674.11 -2.15 -33.19 16 17 C -0.19 -11.59 9.65 84.03 0.81 -10.78 16 18 H 0.06 3.84 6.59 -2.91 -0.02 3.82 16 19 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 20 N -0.95 -59.76 10.41 21.65 0.23 -59.53 16 21 Si 0.94 52.12 29.56 68.60 2.03 54.15 16 22 H -0.29 -15.26 7.11 99.48 0.71 -14.56 16 23 H -0.29 -15.88 7.11 99.48 0.71 -15.18 16 24 H -0.29 -16.67 7.11 99.48 0.71 -15.96 16 25 C 0.14 5.50 2.97 44.77 0.13 5.63 16 26 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 27 C 0.12 4.32 5.69 85.76 0.49 4.80 16 28 C -0.10 -2.63 5.08 30.65 0.16 -2.47 16 29 C 0.07 1.34 5.46 86.33 0.47 1.81 16 30 N -0.57 -12.81 4.75 -897.18 -4.26 -17.06 16 31 C 0.02 0.40 9.05 127.69 1.16 1.55 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.41 6.33 -2.39 -0.02 1.39 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.85 5.59 -2.38 -0.01 1.84 16 39 H 0.03 1.22 6.85 -2.39 -0.02 1.20 16 40 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.08 2.41 7.97 -2.39 -0.02 2.39 16 42 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.01 0.64 6.91 -2.39 -0.02 0.63 16 44 H -0.01 -0.39 7.71 -2.38 -0.02 -0.41 16 45 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 46 H 0.05 2.19 5.56 -2.39 -0.01 2.18 16 47 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.04 1.56 7.78 -2.39 -0.02 1.54 16 49 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 51 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.04 0.51 8.14 -2.38 -0.02 0.49 16 53 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 54 H 0.07 1.16 6.21 -2.39 -0.01 1.15 16 Total: -1.00 -82.29 393.69 0.61 -81.68 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.86 Total: 11.17 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 6.40 Total: 14.81 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -8.62 Total: -132.32 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.05 Total: -29.48 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.03 Total: 54.15 kcal Total: -82.29 0.61 -81.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085017566.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.207 kcal (2) G-P(sol) polarization free energy of solvation -82.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds