Wall clock time and date at job start Tue Mar 31 2020 19:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.86487 * 2 1 4 4 C 1.54462 * 109.87381 * 238.99518 * 2 1 3 5 5 C 1.54369 * 102.86813 * 219.06710 * 4 2 1 6 6 C 1.54144 * 102.47944 * 34.64778 * 5 4 2 7 7 N 1.47079 * 109.87791 * 121.15698 * 2 1 3 8 8 C 1.34777 * 125.62947 * 298.46857 * 7 2 1 9 9 O 1.21284 * 119.99771 * 359.97438 * 8 7 2 10 10 C 1.50701 * 119.99956 * 179.97438 * 8 7 2 11 11 H 1.09001 * 109.87630 * 8.90261 * 10 8 7 12 12 C 1.54314 * 109.88743 * 247.87108 * 10 8 7 13 13 C 1.55398 * 102.90103 * 218.40691 * 12 10 8 14 14 C 1.54913 * 101.74057 * 35.48147 * 13 12 10 15 15 N 1.47446 * 109.88896 * 129.93480 * 10 8 7 16 16 C 1.46898 * 110.99682 * 356.14500 * 15 10 8 17 17 C 1.52114 * 110.56423 * 152.60069 * 5 4 2 18 18 C 1.53339 * 109.44281 * 182.79697 * 17 5 4 19 19 N 1.46926 * 108.69327 * 306.70599 * 18 17 5 20 20 C 1.36937 * 120.55037 * 234.36764 * 19 18 17 21 21 H 1.07997 * 120.00089 * 29.33328 * 20 19 18 22 22 C 1.38813 * 119.99533 * 209.32969 * 20 19 18 23 23 N 1.31619 * 120.00363 * 16.41163 * 22 20 19 24 24 Si 1.86800 * 119.99910 * 196.40647 * 22 20 19 25 25 H 1.48501 * 109.47129 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47105 * 119.99980 * 24 22 20 27 27 H 1.48502 * 109.47482 * 240.00434 * 24 22 20 28 28 C 1.46937 * 118.89578 * 54.34243 * 19 18 17 29 29 C 1.52100 * 110.55703 * 276.69565 * 5 4 2 30 30 H 1.09003 * 109.47212 * 181.00547 * 1 2 3 31 31 H 1.08997 * 109.47201 * 301.00354 * 1 2 3 32 32 H 1.09001 * 109.46880 * 61.00692 * 1 2 3 33 33 H 1.09003 * 110.73243 * 100.73065 * 4 2 1 34 34 H 1.08991 * 110.89292 * 337.48294 * 4 2 1 35 35 H 1.09001 * 110.37778 * 82.73798 * 6 5 4 36 36 H 1.08992 * 110.37709 * 205.09060 * 6 5 4 37 37 H 1.09007 * 110.70673 * 336.69174 * 12 10 8 38 38 H 1.09000 * 110.70853 * 99.92892 * 12 10 8 39 39 H 1.08994 * 110.87132 * 277.39587 * 13 12 10 40 40 H 1.08994 * 111.02816 * 153.63160 * 13 12 10 41 41 H 1.08994 * 110.37504 * 204.19265 * 14 13 12 42 42 H 1.08997 * 110.37500 * 81.84849 * 14 13 12 43 43 H 1.09000 * 109.46891 * 72.55737 * 16 15 10 44 44 H 1.08997 * 109.47131 * 192.55435 * 16 15 10 45 45 H 1.08999 * 109.47755 * 312.55428 * 16 15 10 46 46 H 1.09003 * 109.47675 * 302.79244 * 17 5 4 47 47 H 1.09001 * 109.47354 * 62.80623 * 17 5 4 48 48 H 1.09001 * 109.59874 * 186.94156 * 18 17 5 49 49 H 1.09000 * 109.73144 * 66.54563 * 18 17 5 50 50 H 0.97000 * 120.00210 * 179.97438 * 23 22 20 51 51 H 1.09005 * 109.60190 * 185.89816 * 28 19 18 52 52 H 1.08992 * 109.73568 * 65.49098 * 28 19 18 53 53 H 1.09008 * 109.47733 * 297.18438 * 29 5 4 54 54 H 1.08999 * 109.47815 * 57.19486 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0551 -0.7483 -1.2451 5 6 3.2709 -1.5231 -0.6932 6 6 2.8170 -1.8809 0.7358 7 7 2.0301 -0.7156 1.1836 8 6 1.8060 -0.3654 2.4657 9 8 1.1410 0.6168 2.7186 10 6 2.3818 -1.1943 3.5849 11 1 3.0723 -1.9343 3.1805 12 6 1.2452 -1.9011 4.3529 13 6 1.7216 -1.8200 5.8298 14 6 2.4215 -0.4383 5.8597 15 7 3.0853 -0.3228 4.5438 16 6 3.0949 1.0709 4.0795 17 6 3.5166 -2.7832 -1.5092 18 6 4.6837 -3.5676 -0.8978 19 7 5.8386 -2.6687 -0.7680 20 6 7.0476 -3.0051 -1.3159 21 1 7.0864 -3.6265 -2.1984 22 6 8.2234 -2.5474 -0.7371 23 7 8.2117 -2.0751 0.4914 24 14 9.8222 -2.6021 -1.7016 25 1 9.5683 -3.1726 -3.0489 26 1 10.3633 -1.2263 -1.8412 27 1 10.8059 -3.4502 -0.9818 28 6 5.6745 -1.4024 -0.0409 29 6 4.5018 -0.6304 -0.6573 30 1 -0.3634 -1.0275 0.0180 31 1 -0.3633 0.5293 0.8808 32 1 -0.3633 0.4981 -0.8989 33 1 2.3648 -0.0434 -2.0168 34 1 1.3027 -1.4355 -1.6316 35 1 2.1958 -2.7765 0.7237 36 1 3.6816 -2.0265 1.3833 37 1 0.3028 -1.3689 4.2226 38 1 1.1505 -2.9386 4.0324 39 1 2.4269 -2.6199 6.0548 40 1 0.8749 -1.8436 6.5157 41 1 3.1594 -0.4040 6.6612 42 1 1.6866 0.3568 5.9851 43 1 2.0965 1.4955 4.1841 44 1 3.7998 1.6483 4.6777 45 1 3.3956 1.1030 3.0323 46 1 2.6192 -3.4019 -1.5016 47 1 3.7608 -2.5095 -2.5356 48 1 4.9424 -4.4038 -1.5475 49 1 4.4000 -3.9427 0.0855 50 1 9.0334 -1.7556 0.8960 51 1 6.5864 -0.8112 -0.1257 52 1 5.4667 -1.6055 1.0096 53 1 4.7599 -0.3263 -1.6718 54 1 4.2921 0.2537 -0.0553 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086910529.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:26 Heat of formation + Delta-G solvation = -16.710686 kcal Electronic energy + Delta-G solvation = -32116.628279 eV Core-core repulsion = 28281.116105 eV Total energy + Delta-G solvation = -3835.512175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.15611 -40.69368 -38.60899 -37.38925 -34.80711 -33.33254 -33.00246 -32.47775 -31.60745 -30.21315 -28.72986 -26.92346 -26.67139 -26.00573 -24.32561 -23.76080 -22.73143 -22.25195 -21.43008 -20.22054 -19.40845 -18.61793 -18.31577 -17.22597 -16.91359 -16.83526 -16.34110 -16.11919 -15.71352 -15.43355 -15.30351 -14.99353 -14.87979 -14.79184 -14.47775 -14.18226 -13.95874 -13.94269 -13.52023 -13.47268 -13.19230 -13.07943 -13.00040 -12.89916 -12.74006 -12.59937 -12.54948 -12.40350 -12.27736 -12.23330 -12.10775 -11.98909 -11.85321 -11.80330 -11.74021 -11.41846 -11.08189 -10.95406 -10.88847 -10.49613 -9.71498 -9.29236 -8.59822 -7.83657 -5.29801 1.43701 1.46024 1.48769 1.58298 1.93273 2.53162 2.96224 3.28307 3.30013 3.51092 3.54965 3.67615 3.73474 3.80497 3.86543 4.10364 4.13614 4.22504 4.24113 4.29394 4.31700 4.46241 4.49286 4.53513 4.56965 4.58947 4.70900 4.72609 4.75832 4.76345 4.80926 4.83065 4.90511 4.93984 4.95890 4.96296 5.02042 5.05961 5.11883 5.21833 5.23334 5.30437 5.34310 5.38119 5.43541 5.44973 5.57090 5.69113 5.78047 5.80755 5.89060 6.43520 6.46777 7.06413 7.19265 7.91914 8.42730 9.21819 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.003988 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.214168 B = 7018.564322 C = 8292.897840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.130 3.870 3 H 0.054 0.946 4 C -0.107 4.107 5 C -0.053 4.053 6 C 0.111 3.889 7 N -0.605 5.605 8 C 0.520 3.480 9 O -0.571 6.571 10 C 0.049 3.951 11 H 0.095 0.905 12 C -0.121 4.121 13 C -0.118 4.118 14 C 0.035 3.965 15 N -0.526 5.526 16 C 0.024 3.976 17 C -0.104 4.104 18 C 0.138 3.862 19 N -0.607 5.607 20 C -0.258 4.258 21 H 0.067 0.933 22 C -0.049 4.049 23 N -0.934 5.934 24 Si 0.960 3.040 25 H -0.264 1.264 26 H -0.294 1.294 27 H -0.294 1.294 28 C 0.186 3.814 29 C -0.110 4.110 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.037 0.963 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.019 0.981 50 H 0.247 0.753 51 H 0.042 0.958 52 H -0.004 1.004 53 H 0.054 0.946 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.178 0.448 3.513 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.027 3.973 3 H 0.073 0.927 4 C -0.145 4.145 5 C -0.054 4.054 6 C -0.011 4.011 7 N -0.337 5.337 8 C 0.309 3.691 9 O -0.451 6.451 10 C -0.063 4.063 11 H 0.113 0.887 12 C -0.160 4.160 13 C -0.156 4.156 14 C -0.092 4.092 15 N -0.250 5.250 16 C -0.124 4.124 17 C -0.143 4.143 18 C 0.013 3.987 19 N -0.330 5.330 20 C -0.389 4.389 21 H 0.085 0.915 22 C -0.244 4.244 23 N -0.580 5.580 24 Si 0.788 3.212 25 H -0.189 1.189 26 H -0.221 1.221 27 H -0.221 1.221 28 C 0.060 3.940 29 C -0.149 4.149 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.056 0.944 46 H 0.111 0.889 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.037 0.963 50 H 0.056 0.944 51 H 0.060 0.940 52 H 0.014 0.986 53 H 0.073 0.927 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.890 0.878 3.828 18.316 hybrid contribution 0.904 0.706 -0.286 1.182 sum -16.986 1.583 3.543 17.423 Atomic orbital electron populations 1.22018 0.93580 1.02535 1.02487 1.21675 0.95194 0.95577 0.84817 0.92746 1.22754 0.96723 0.99422 0.95560 1.20889 0.94228 0.96313 0.93947 1.22479 0.94574 0.88305 0.95785 1.48807 1.51309 1.28637 1.04963 1.20888 0.79844 0.85143 0.83177 1.90618 1.42056 1.28956 1.83484 1.22745 0.96521 0.95525 0.91464 0.88718 1.22767 0.96010 1.01476 0.95723 1.22756 1.00969 0.96570 0.95267 1.23265 0.97245 0.97990 0.90686 1.64032 1.50217 1.07975 1.02819 1.22696 1.01225 0.89313 0.99140 1.21733 0.98760 0.95056 0.98750 1.21144 0.87575 0.92483 0.97512 1.44255 1.07097 1.17544 1.64145 1.19536 0.84166 1.29495 1.05660 0.91513 1.25762 1.00660 1.02139 0.95882 1.70188 1.26975 1.47627 1.13249 0.85319 0.80239 0.76785 0.78809 1.18860 1.22147 1.22077 1.20468 0.95224 0.86730 0.91599 1.21764 0.95661 0.97149 1.00323 0.91692 0.93775 0.89814 0.89446 0.87927 0.89196 0.91963 0.91429 0.88296 0.89623 0.88183 0.88854 0.93336 0.92985 0.91143 0.94436 0.88928 0.91817 0.92750 0.96318 0.94372 0.93978 0.98584 0.92704 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.10 71.98 0.65 -2.49 16 2 C 0.13 3.24 3.10 45.38 0.14 3.39 16 3 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.11 -2.31 5.42 31.56 0.17 -2.14 16 5 C -0.05 -1.49 0.54 -51.92 -0.03 -1.51 16 6 C 0.11 3.08 4.46 86.56 0.39 3.47 16 7 N -0.60 -17.01 3.06 -788.79 -2.41 -19.43 16 8 C 0.52 15.87 4.74 87.66 0.42 16.29 16 9 O -0.57 -19.73 12.76 -3.04 -0.04 -19.77 16 10 C 0.05 1.35 3.62 44.51 0.16 1.52 16 11 H 0.09 2.83 6.10 -2.39 -0.01 2.81 16 12 C -0.12 -2.55 6.48 31.86 0.21 -2.35 16 13 C -0.12 -2.10 7.08 32.07 0.23 -1.88 16 14 C 0.04 0.79 6.73 86.78 0.58 1.37 16 15 N -0.53 -15.36 5.44 -890.93 -4.85 -20.21 16 16 C 0.02 0.76 8.19 127.69 1.05 1.80 16 17 C -0.10 -2.88 4.83 30.42 0.15 -2.73 16 18 C 0.14 5.14 6.24 86.41 0.54 5.68 16 19 N -0.61 -29.08 2.97 -698.49 -2.08 -31.16 16 20 C -0.26 -13.87 9.56 84.03 0.80 -13.06 16 21 H 0.07 3.49 7.88 -2.91 -0.02 3.46 16 22 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 23 N -0.93 -55.60 11.23 21.65 0.24 -55.36 16 24 Si 0.96 44.80 29.58 68.60 2.03 46.83 16 25 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 C 0.19 8.79 5.00 86.41 0.43 9.22 16 29 C -0.11 -4.01 4.83 30.41 0.15 -3.86 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.14 6.90 -2.39 -0.02 1.13 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.81 8.01 -2.39 -0.02 1.79 16 34 H 0.10 1.73 7.70 -2.39 -0.02 1.71 16 35 H 0.09 2.09 7.97 -2.39 -0.02 2.07 16 36 H 0.06 2.13 4.90 -2.39 -0.01 2.11 16 37 H 0.07 1.53 7.76 -2.38 -0.02 1.51 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.09 7.58 -2.39 -0.02 1.07 16 43 H 0.05 1.67 5.91 -2.39 -0.01 1.66 16 44 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.04 1.32 6.73 -2.39 -0.02 1.30 16 46 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 47 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 49 H 0.02 0.70 7.64 -2.39 -0.02 0.68 16 50 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 51 H 0.04 2.34 6.09 -2.38 -0.01 2.33 16 52 H 0.00 -0.19 6.58 -2.39 -0.02 -0.21 16 53 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 54 H 0.04 1.61 7.84 -2.39 -0.02 1.60 16 Total: -1.00 -67.31 392.56 0.21 -67.10 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.86 Total: 21.59 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 6.45 Total: 10.40 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -9.10 Total: -126.16 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.04 Total: -19.77 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -67.31 0.21 -67.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086910529.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.393 kcal (2) G-P(sol) polarization free energy of solvation -67.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds