Wall clock time and date at job start Tue Mar 31 2020 19:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.31524 * 2 1 4 4 C 1.55021 * 110.35412 * 237.79965 * 2 1 3 5 5 C 1.54536 * 101.52531 * 204.65207 * 4 2 1 6 6 C 1.53674 * 103.64659 * 34.83236 * 5 4 2 7 7 N 1.47441 * 107.14595 * 338.45691 * 6 5 4 8 8 C 1.34771 * 125.80124 * 178.46771 * 7 6 5 9 9 O 1.21287 * 119.99849 * 180.02562 * 8 7 6 10 10 C 1.50702 * 120.00236 * 0.02562 * 8 7 6 11 11 H 1.08997 * 110.33283 * 319.30260 * 10 8 7 12 12 C 1.54907 * 110.37342 * 81.55620 * 10 8 7 13 13 C 1.55256 * 101.59847 * 155.81784 * 12 10 8 14 14 C 1.54318 * 103.08884 * 324.48666 * 13 12 10 15 15 N 1.47449 * 107.22825 * 22.20186 * 14 13 12 16 16 C 1.46899 * 110.99492 * 123.26383 * 15 14 13 17 17 C 1.52276 * 110.15714 * 276.39839 * 5 4 2 18 18 C 1.53317 * 109.42188 * 297.17105 * 17 5 4 19 19 N 1.46927 * 108.70315 * 306.48677 * 18 17 5 20 20 C 1.36937 * 120.56455 * 234.20812 * 19 18 17 21 21 H 1.07992 * 119.99836 * 152.08252 * 20 19 18 22 22 C 1.38806 * 119.99766 * 332.08922 * 20 19 18 23 23 N 1.31620 * 120.00480 * 342.47653 * 22 20 19 24 24 Si 1.86803 * 120.00091 * 162.48428 * 22 20 19 25 25 H 1.48500 * 109.47209 * 94.32897 * 24 22 20 26 26 H 1.48499 * 109.47181 * 214.33264 * 24 22 20 27 27 H 1.48505 * 109.46756 * 334.33317 * 24 22 20 28 28 C 1.46939 * 118.87288 * 54.23374 * 19 18 17 29 29 C 1.52269 * 110.15870 * 153.28164 * 5 4 2 30 30 H 1.09002 * 109.47448 * 180.69816 * 1 2 3 31 31 H 1.08996 * 109.47316 * 300.70077 * 1 2 3 32 32 H 1.08999 * 109.47158 * 60.69832 * 1 2 3 33 33 H 1.09002 * 111.01124 * 322.70874 * 4 2 1 34 34 H 1.08996 * 111.01492 * 86.58368 * 4 2 1 35 35 H 1.09000 * 109.90703 * 97.81568 * 6 5 4 36 36 H 1.09001 * 109.90682 * 218.88599 * 6 5 4 37 37 H 1.09005 * 110.98616 * 273.99213 * 12 10 8 38 38 H 1.08999 * 110.99339 * 37.80641 * 12 10 8 39 39 H 1.09003 * 110.74225 * 206.04715 * 13 12 10 40 40 H 1.09001 * 110.75524 * 82.93193 * 13 12 10 41 41 H 1.09003 * 109.88929 * 262.80598 * 14 13 12 42 42 H 1.08997 * 109.89279 * 141.60926 * 14 13 12 43 43 H 1.09007 * 109.46929 * 299.14968 * 16 15 14 44 44 H 1.09000 * 109.47899 * 59.15377 * 16 15 14 45 45 H 1.09000 * 109.47077 * 179.15917 * 16 15 14 46 46 H 1.09000 * 109.47958 * 57.15627 * 17 5 4 47 47 H 1.09000 * 109.47939 * 177.18005 * 17 5 4 48 48 H 1.09002 * 109.59452 * 186.72679 * 18 17 5 49 49 H 1.08996 * 109.59923 * 66.25606 * 18 17 5 50 50 H 0.97001 * 120.00732 * 179.97438 * 23 22 20 51 51 H 1.08995 * 109.60108 * 185.98978 * 28 19 18 52 52 H 1.09006 * 109.72766 * 65.60034 * 28 19 18 53 53 H 1.09000 * 109.48087 * 182.80618 * 29 5 4 54 54 H 1.09001 * 109.48075 * 302.83827 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0692 -0.7745 -1.2299 5 6 3.4668 -1.2081 -0.7332 6 6 3.2521 -1.4769 0.7645 7 7 2.0429 -0.7370 1.1699 8 6 1.4966 -0.7338 2.4020 9 8 0.4955 -0.0847 2.6197 10 6 2.1296 -1.5369 3.5090 11 1 2.4631 -2.5039 3.1325 12 6 3.3185 -0.7597 4.1272 13 6 3.3980 -1.3869 5.5451 14 6 1.9180 -1.6496 5.8945 15 7 1.1749 -1.7196 4.6229 16 6 0.4610 -2.9976 4.5002 17 6 4.4698 -0.0809 -0.9388 18 6 4.6031 0.2159 -2.4370 19 7 4.9188 -1.0356 -3.1390 20 6 6.0155 -1.1189 -3.9548 21 1 6.5065 -2.0691 -4.1039 22 6 6.4960 0.0180 -4.5898 23 7 5.7316 1.0839 -4.6986 24 14 8.2277 0.0352 -5.2902 25 1 8.1839 -0.3352 -6.7276 26 1 8.8061 1.3954 -5.1469 27 1 9.0695 -0.9410 -4.5529 28 6 4.0374 -2.1962 -2.9512 29 6 3.9078 -2.4773 -1.4497 30 1 -0.3634 -1.0276 0.0125 31 1 -0.3634 0.5247 0.8836 32 1 -0.3633 0.5029 -0.8962 33 1 1.4461 -1.6415 -1.4497 34 1 2.1483 -0.1216 -2.0990 35 1 3.1077 -2.5441 0.9331 36 1 4.1136 -1.1250 1.3320 37 1 4.2360 -0.9394 3.5668 38 1 3.1004 0.3067 4.1845 39 1 3.8426 -0.6869 6.2526 40 1 3.9605 -2.3203 5.5237 41 1 1.5309 -0.8343 6.5057 42 1 1.8255 -2.5941 6.4306 43 1 1.1789 -3.8178 4.5169 44 1 -0.2347 -3.1067 5.3322 45 1 -0.0907 -3.0168 3.5603 46 1 4.1230 0.8131 -0.4206 47 1 5.4391 -0.3795 -0.5396 48 1 5.4048 0.9370 -2.5969 49 1 3.6640 0.6202 -2.8147 50 1 6.0675 1.8786 -5.1420 51 1 4.4658 -3.0653 -3.4503 52 1 3.0536 -1.9826 -3.3694 53 1 4.8714 -2.8008 -1.0560 54 1 3.1677 -3.2612 -1.2892 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086910531.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:33 Heat of formation + Delta-G solvation = -20.247549 kcal Electronic energy + Delta-G solvation = -31377.016747 eV Core-core repulsion = 27541.351202 eV Total energy + Delta-G solvation = -3835.665545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.83815 -40.40222 -38.85172 -37.31854 -34.76118 -33.36254 -32.79995 -32.55171 -31.58042 -30.14594 -28.60381 -27.17177 -26.63608 -25.72055 -24.31501 -23.71328 -22.55722 -22.19975 -21.68526 -19.79000 -19.64425 -18.41932 -18.06113 -17.34665 -16.88415 -16.80639 -16.29024 -15.71687 -15.57409 -15.54322 -15.15345 -15.05472 -14.82475 -14.63595 -14.37230 -14.22365 -14.12640 -13.92968 -13.70031 -13.43141 -13.20224 -13.07385 -13.02093 -12.94578 -12.82015 -12.54402 -12.48688 -12.35899 -12.25199 -12.20846 -12.12474 -12.03343 -11.78217 -11.75033 -11.66018 -11.40102 -11.06854 -10.96213 -10.48811 -10.44622 -9.58975 -9.27270 -8.61126 -7.83718 -5.27574 1.47374 1.49709 1.58829 1.66628 1.89800 2.53994 3.02058 3.29665 3.40767 3.53867 3.61902 3.70612 3.77561 3.83684 3.96687 4.02943 4.12124 4.19764 4.25942 4.30387 4.42198 4.44862 4.49021 4.53694 4.58052 4.59185 4.71861 4.72751 4.76609 4.78685 4.82507 4.88390 4.93232 4.94388 4.97029 4.99367 5.05269 5.07751 5.13784 5.22705 5.28094 5.29533 5.33517 5.39306 5.45140 5.52520 5.58398 5.69974 5.84728 5.87924 6.07447 6.43476 6.62757 7.19828 7.29161 7.92819 8.43098 9.21970 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.002895 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.670689 B = 9668.103895 C =10205.531089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 H 0.061 0.939 4 C -0.111 4.111 5 C -0.052 4.052 6 C 0.115 3.885 7 N -0.613 5.613 8 C 0.533 3.467 9 O -0.559 6.559 10 C 0.062 3.938 11 H 0.091 0.909 12 C -0.116 4.116 13 C -0.131 4.131 14 C 0.042 3.958 15 N -0.541 5.541 16 C 0.025 3.975 17 C -0.112 4.112 18 C 0.180 3.820 19 N -0.608 5.608 20 C -0.258 4.258 21 H 0.066 0.934 22 C -0.051 4.051 23 N -0.934 5.934 24 Si 0.961 3.039 25 H -0.289 1.289 26 H -0.295 1.295 27 H -0.268 1.268 28 C 0.142 3.858 29 C -0.105 4.105 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.048 0.952 49 H 0.000 1.000 50 H 0.248 0.752 51 H 0.051 0.949 52 H 0.015 0.985 53 H 0.064 0.936 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.969 -9.328 20.117 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.033 3.967 3 H 0.079 0.921 4 C -0.149 4.149 5 C -0.053 4.053 6 C -0.007 4.007 7 N -0.347 5.347 8 C 0.321 3.679 9 O -0.437 6.437 10 C -0.050 4.050 11 H 0.109 0.891 12 C -0.155 4.155 13 C -0.169 4.169 14 C -0.084 4.084 15 N -0.266 5.266 16 C -0.123 4.123 17 C -0.151 4.151 18 C 0.055 3.945 19 N -0.332 5.332 20 C -0.388 4.388 21 H 0.084 0.916 22 C -0.246 4.246 23 N -0.581 5.581 24 Si 0.790 3.210 25 H -0.216 1.216 26 H -0.222 1.222 27 H -0.193 1.193 28 C 0.017 3.983 29 C -0.144 4.144 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.066 0.934 49 H 0.018 0.982 50 H 0.057 0.943 51 H 0.070 0.930 52 H 0.033 0.967 53 H 0.083 0.917 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.890 -8.480 20.245 23.005 hybrid contribution 1.238 0.072 -1.096 1.654 sum -5.652 -8.408 19.149 21.664 Atomic orbital electron populations 1.22012 0.94059 1.02109 1.02654 1.21858 0.94819 0.95206 0.84800 0.92133 1.22833 0.95560 1.00265 0.96250 1.20843 0.94676 0.96279 0.93457 1.22237 0.86851 0.96997 0.94630 1.48780 1.28616 1.48526 1.08810 1.20558 0.83529 0.81832 0.81935 1.90610 1.26574 1.44617 1.81917 1.22487 0.92508 0.98897 0.91114 0.89134 1.22680 0.96339 0.99374 0.97100 1.22797 0.96352 1.02157 0.95642 1.22900 0.92574 1.02339 0.90636 1.62971 1.27395 1.34677 1.01584 1.22530 0.98520 0.88659 1.02579 1.21871 0.98183 0.97276 0.97748 1.20579 0.97205 0.88204 0.88526 1.44298 1.27892 1.09425 1.51542 1.19502 1.03842 0.95166 1.20296 0.91608 1.25729 1.01890 0.97632 0.99398 1.70182 1.35991 1.04822 1.47093 0.85357 0.80969 0.76646 0.78047 1.21569 1.22175 1.19313 1.21058 0.92649 0.89825 0.94817 1.21770 1.01479 0.95511 0.95605 0.92941 0.91789 0.91316 0.89984 0.91210 0.89415 0.90223 0.88483 0.91987 0.89098 0.89435 0.90894 0.90625 0.93711 0.90171 0.93047 0.92595 0.92416 0.93387 0.98225 0.94313 0.93026 0.96741 0.91690 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 8.65 71.98 0.62 -3.57 16 2 C 0.14 3.84 3.44 45.49 0.16 4.00 16 3 H 0.06 1.87 7.74 -2.39 -0.02 1.85 16 4 C -0.11 -3.16 4.34 31.81 0.14 -3.02 16 5 C -0.05 -1.44 0.55 -51.91 -0.03 -1.47 16 6 C 0.12 2.52 5.52 86.43 0.48 3.00 16 7 N -0.61 -15.75 3.26 -788.01 -2.57 -18.32 16 8 C 0.53 14.65 6.93 87.66 0.61 15.25 16 9 O -0.56 -19.71 14.26 -3.05 -0.04 -19.75 16 10 C 0.06 1.25 2.22 44.64 0.10 1.35 16 11 H 0.09 1.53 7.19 -2.39 -0.02 1.51 16 12 C -0.12 -1.96 6.50 32.02 0.21 -1.75 16 13 C -0.13 -1.58 6.94 31.82 0.22 -1.36 16 14 C 0.04 0.63 6.90 86.64 0.60 1.23 16 15 N -0.54 -11.22 4.68 -890.99 -4.17 -15.39 16 16 C 0.03 0.42 9.12 127.69 1.17 1.59 16 17 C -0.11 -3.83 4.74 30.46 0.14 -3.69 16 18 C 0.18 8.26 4.99 86.40 0.43 8.69 16 19 N -0.61 -28.89 2.98 -698.60 -2.08 -30.97 16 20 C -0.26 -13.71 9.57 84.03 0.80 -12.91 16 21 H 0.07 3.41 7.89 -2.91 -0.02 3.39 16 22 C -0.05 -2.81 4.90 84.86 0.42 -2.39 16 23 N -0.93 -54.59 11.20 21.65 0.24 -54.34 16 24 Si 0.96 44.14 29.59 68.60 2.03 46.16 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 C 0.14 5.37 6.22 86.40 0.54 5.91 16 29 C -0.10 -2.94 4.72 30.46 0.14 -2.79 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 2.05 5.99 -2.39 -0.01 2.03 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 2.15 7.92 -2.39 -0.02 2.13 16 34 H 0.07 2.35 6.08 -2.39 -0.01 2.34 16 35 H 0.09 1.56 7.52 -2.39 -0.02 1.54 16 36 H 0.08 1.59 7.25 -2.39 -0.02 1.57 16 37 H 0.10 1.35 7.56 -2.38 -0.02 1.33 16 38 H 0.06 1.29 8.05 -2.39 -0.02 1.27 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 0.84 7.58 -2.39 -0.02 0.82 16 43 H 0.04 0.58 8.09 -2.38 -0.02 0.56 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.06 1.84 7.47 -2.39 -0.02 1.82 16 47 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.05 2.56 6.02 -2.39 -0.01 2.55 16 49 H 0.00 -0.01 6.47 -2.39 -0.02 -0.03 16 50 H 0.25 14.12 8.31 -92.71 -0.77 13.34 16 51 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 52 H 0.01 0.57 7.56 -2.38 -0.02 0.55 16 53 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 54 H 0.08 1.88 8.11 -2.39 -0.02 1.86 16 Total: -1.00 -67.82 397.56 1.00 -66.81 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.86 Total: 17.74 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 6.74 Total: 8.06 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -8.58 Total: -119.02 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.04 Total: -19.75 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -67.82 1.00 -66.81 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086910531.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.564 kcal (2) G-P(sol) polarization free energy of solvation -67.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds