Wall clock time and date at job start Tue Mar 31 2020 19:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.87226 * 2 1 4 4 C 1.54458 * 109.87742 * 238.99117 * 2 1 3 5 5 C 1.54386 * 102.87357 * 218.92332 * 4 2 1 6 6 C 1.54122 * 102.47757 * 34.64443 * 5 4 2 7 7 N 1.47082 * 110.00255 * 121.08553 * 2 1 3 8 8 C 1.34777 * 125.62892 * 298.50319 * 7 2 1 9 9 O 1.21281 * 119.99811 * 5.03231 * 8 7 2 10 10 C 1.50701 * 120.00380 * 185.02547 * 8 7 2 11 11 H 1.08999 * 110.63860 * 28.57523 * 10 8 7 12 12 C 1.54594 * 110.72481 * 265.42217 * 10 8 7 13 13 C 1.53999 * 105.13368 * 219.68198 * 12 10 8 14 14 N 1.47900 * 107.06024 * 358.77512 * 13 12 10 15 15 C 1.46902 * 110.99534 * 145.84575 * 14 13 12 16 16 C 1.48720 * 105.94372 * 25.20445 * 14 13 12 17 17 C 1.52106 * 110.51248 * 152.62873 * 5 4 2 18 18 C 1.53341 * 109.44933 * 64.11794 * 17 5 4 19 19 N 1.46923 * 108.68952 * 53.29580 * 18 17 5 20 20 C 1.36939 * 120.55320 * 125.65763 * 19 18 17 21 21 H 1.08000 * 119.99863 * 328.32319 * 20 19 18 22 22 C 1.38814 * 120.00002 * 148.05476 * 20 19 18 23 23 N 1.31617 * 119.99986 * 350.07109 * 22 20 19 24 24 Si 1.86804 * 119.99795 * 170.07562 * 22 20 19 25 25 H 1.48498 * 109.47218 * 89.99875 * 24 22 20 26 26 H 1.48497 * 109.46935 * 209.99432 * 24 22 20 27 27 H 1.48500 * 109.46938 * 329.99615 * 24 22 20 28 28 C 1.46929 * 118.89673 * 305.92775 * 19 18 17 29 29 C 1.52105 * 110.51746 * 276.66146 * 5 4 2 30 30 H 1.09006 * 109.47110 * 181.00946 * 1 2 3 31 31 H 1.08997 * 109.47141 * 301.00301 * 1 2 3 32 32 H 1.08996 * 109.47090 * 61.01049 * 1 2 3 33 33 H 1.09003 * 110.73032 * 100.58051 * 4 2 1 34 34 H 1.09003 * 110.73697 * 337.27120 * 4 2 1 35 35 H 1.08998 * 110.37800 * 82.74585 * 6 5 4 36 36 H 1.09006 * 110.37718 * 205.09856 * 6 5 4 37 37 H 1.08992 * 110.31061 * 338.59554 * 12 10 8 38 38 H 1.08997 * 110.30817 * 100.76779 * 12 10 8 39 39 H 1.09004 * 109.91221 * 118.13289 * 13 12 10 40 40 H 1.09006 * 109.91634 * 239.41764 * 13 12 10 41 41 H 1.08996 * 109.47385 * 60.12386 * 15 14 13 42 42 H 1.09003 * 109.46580 * 180.12699 * 15 14 13 43 43 H 1.09007 * 109.47177 * 300.12175 * 15 14 13 44 44 H 1.09003 * 110.83986 * 202.57583 * 16 14 13 45 45 H 1.08998 * 110.59072 * 79.37805 * 16 14 13 46 46 H 1.08998 * 109.47614 * 304.12417 * 17 5 4 47 47 H 1.09001 * 109.48076 * 184.10902 * 17 5 4 48 48 H 1.09004 * 109.59655 * 293.53935 * 18 17 5 49 49 H 1.08994 * 109.60676 * 173.06279 * 18 17 5 50 50 H 0.96998 * 119.99826 * 180.02562 * 23 22 20 51 51 H 1.09003 * 109.60840 * 173.83363 * 28 19 18 52 52 H 1.09006 * 109.60193 * 294.31277 * 28 19 18 53 53 H 1.09009 * 109.47427 * 55.87589 * 29 5 4 54 54 H 1.09007 * 109.47926 * 175.88919 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0552 -0.7483 -1.2450 5 6 3.2733 -1.5203 -0.6939 6 6 2.8220 -1.8776 0.7358 7 7 2.0331 -0.7136 1.1836 8 6 1.8104 -0.3624 2.4656 9 8 1.0700 0.5636 2.7208 10 6 2.4814 -1.1204 3.5821 11 1 3.4319 -1.5357 3.2474 12 6 1.5557 -2.2358 4.1195 13 6 1.7538 -2.2215 5.6467 14 7 2.7581 -1.1773 5.9442 15 6 2.4692 -0.5191 7.2254 16 6 2.6862 -0.2087 4.8180 17 6 3.5199 -2.7798 -1.5102 18 6 3.8926 -2.3926 -2.9464 19 7 5.0135 -1.4437 -2.9023 20 6 6.1630 -1.6911 -3.6042 21 1 6.4913 -2.7079 -3.7616 22 6 6.9034 -0.6353 -4.1180 23 7 6.4081 0.5841 -4.1038 24 14 8.6025 -0.9451 -4.8297 25 1 8.4850 -1.2431 -6.2797 26 1 9.4465 0.2617 -4.6392 27 1 9.2266 -2.1003 -4.1359 28 6 4.8828 -0.2278 -2.0879 29 6 4.5021 -0.6245 -0.6615 30 1 -0.3634 -1.0276 0.0181 31 1 -0.3633 0.5293 0.8808 32 1 -0.3633 0.4980 -0.8989 33 1 2.3624 -0.0435 -2.0177 34 1 1.3022 -1.4376 -1.6272 35 1 2.2026 -2.7745 0.7254 36 1 3.6878 -2.0208 1.3825 37 1 0.5172 -2.0182 3.8707 38 1 1.8496 -3.2018 3.7089 39 1 0.8120 -1.9827 6.1409 40 1 2.1169 -3.1927 5.9831 41 1 2.4885 -1.2583 8.0261 42 1 3.2215 0.2456 7.4186 43 1 1.4833 -0.0561 7.1819 44 1 3.6155 0.3543 4.7309 45 1 1.8380 0.4640 4.9445 46 1 2.6160 -3.3887 -1.5210 47 1 4.3358 -3.3484 -1.0639 48 1 3.0366 -1.9249 -3.4328 49 1 4.1892 -3.2833 -3.5001 50 1 6.9253 1.3218 -4.4632 51 1 5.8319 0.3081 -2.0757 52 1 4.1050 0.4109 -2.5065 53 1 4.2836 0.2712 -0.0798 54 1 5.3320 -1.1622 -0.2029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086956193.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:48 Heat of formation + Delta-G solvation = -28.043696 kcal Electronic energy + Delta-G solvation = -31123.308369 eV Core-core repulsion = 27287.304758 eV Total energy + Delta-G solvation = -3836.003611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.89569 -40.42512 -38.91536 -37.43980 -34.78646 -33.81358 -32.56201 -32.30268 -31.61498 -30.04057 -28.68694 -27.16518 -26.85928 -25.76177 -24.20260 -23.71341 -22.58000 -22.00762 -21.84131 -19.79875 -19.61157 -18.59669 -18.20604 -17.24681 -16.92068 -16.80704 -16.29948 -15.79470 -15.50278 -15.34689 -15.24198 -15.07495 -14.89871 -14.62443 -14.61814 -14.36038 -14.15780 -13.95154 -13.74435 -13.47090 -13.25937 -13.14258 -12.90595 -12.83975 -12.61238 -12.56202 -12.52237 -12.49512 -12.26488 -12.24669 -12.19099 -12.01861 -11.79306 -11.72227 -11.64881 -11.38749 -11.06459 -11.01605 -10.70666 -10.49631 -9.65395 -9.48386 -8.54219 -7.82997 -5.33701 1.47451 1.48683 1.53774 1.57594 1.92190 2.52866 2.97651 3.31471 3.43722 3.53563 3.54744 3.63358 3.76609 3.85309 3.91335 4.10460 4.18366 4.24681 4.26466 4.29911 4.35792 4.47873 4.49387 4.50893 4.56786 4.60158 4.68388 4.72331 4.76546 4.78421 4.82298 4.85488 4.91150 4.95506 4.96847 4.97795 4.99413 5.06347 5.12623 5.14105 5.25256 5.30861 5.34456 5.42956 5.43741 5.48504 5.60304 5.69516 5.78078 5.85575 5.98524 6.46028 6.54268 7.11808 7.21052 7.92578 8.44001 9.22028 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.016745 B = 0.002866 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.765783 B = 9768.745925 C =10415.518291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.135 3.865 3 H 0.049 0.951 4 C -0.110 4.110 5 C -0.054 4.054 6 C 0.113 3.887 7 N -0.606 5.606 8 C 0.535 3.465 9 O -0.582 6.582 10 C -0.107 4.107 11 H 0.114 0.886 12 C -0.109 4.109 13 C 0.037 3.963 14 N -0.531 5.531 15 C 0.015 3.985 16 C 0.052 3.948 17 C -0.104 4.104 18 C 0.141 3.859 19 N -0.609 5.609 20 C -0.258 4.258 21 H 0.066 0.934 22 C -0.051 4.051 23 N -0.937 5.937 24 Si 0.964 3.036 25 H -0.286 1.286 26 H -0.297 1.297 27 H -0.268 1.268 28 C 0.184 3.816 29 C -0.110 4.110 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.049 0.951 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.026 0.974 44 H 0.082 0.918 45 H 0.044 0.956 46 H 0.091 0.909 47 H 0.063 0.937 48 H 0.016 0.984 49 H 0.052 0.948 50 H 0.247 0.753 51 H 0.045 0.955 52 H -0.004 1.004 53 H 0.047 0.953 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.484 -8.307 17.972 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.032 3.968 3 H 0.067 0.933 4 C -0.148 4.148 5 C -0.055 4.055 6 C -0.009 4.009 7 N -0.338 5.338 8 C 0.325 3.675 9 O -0.463 6.463 10 C -0.129 4.129 11 H 0.132 0.868 12 C -0.147 4.147 13 C -0.091 4.091 14 N -0.255 5.255 15 C -0.134 4.134 16 C -0.077 4.077 17 C -0.143 4.143 18 C 0.016 3.984 19 N -0.332 5.332 20 C -0.388 4.388 21 H 0.083 0.917 22 C -0.246 4.246 23 N -0.583 5.583 24 Si 0.793 3.207 25 H -0.212 1.212 26 H -0.223 1.223 27 H -0.193 1.193 28 C 0.058 3.942 29 C -0.149 4.149 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.044 0.956 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.109 0.891 47 H 0.082 0.918 48 H 0.034 0.966 49 H 0.071 0.929 50 H 0.056 0.944 51 H 0.064 0.936 52 H 0.014 0.986 53 H 0.066 0.934 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.297 -7.899 18.186 22.819 hybrid contribution 0.299 1.205 -0.910 1.540 sum -10.997 -6.693 17.276 21.545 Atomic orbital electron populations 1.22024 0.93927 1.02573 1.02226 1.21547 0.94944 0.95403 0.84884 0.93276 1.22690 0.97218 0.99360 0.95493 1.20901 0.94139 0.96102 0.94368 1.22528 0.95540 0.88241 0.94564 1.48691 1.51565 1.28920 1.04595 1.20475 0.80828 0.83456 0.82752 1.90646 1.39567 1.32376 1.83670 1.22203 1.00973 0.97005 0.92732 0.86758 1.22331 0.98541 0.98473 0.95391 1.22950 0.94054 0.97168 0.94900 1.64793 1.47167 1.11152 1.02345 1.22569 0.99674 0.99719 0.91396 1.23091 1.01349 0.94139 0.89080 1.21703 1.01860 0.95349 0.95414 1.21096 0.89384 0.92536 0.95403 1.44228 1.13480 1.22556 1.52985 1.19500 1.00258 0.92414 1.26648 0.91653 1.25898 1.02941 0.96048 0.99733 1.70138 1.37937 0.99781 1.50482 0.85319 0.80200 0.76889 0.78310 1.21239 1.22315 1.19304 1.20425 0.98114 0.87833 0.87806 1.21692 0.96867 0.98357 0.97986 0.91461 0.93300 0.90861 0.91773 0.88805 0.88513 0.89425 0.91874 0.87861 0.93289 0.88270 0.89679 0.90967 0.95553 0.89917 0.93723 0.89084 0.91845 0.96554 0.92905 0.94351 0.93639 0.98560 0.93440 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.09 71.98 0.65 -2.96 16 2 C 0.14 3.68 3.11 45.38 0.14 3.82 16 3 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.11 -2.98 4.45 31.56 0.14 -2.84 16 5 C -0.05 -1.49 0.55 -51.92 -0.03 -1.51 16 6 C 0.11 2.38 5.63 86.55 0.49 2.87 16 7 N -0.61 -15.14 3.06 -788.82 -2.41 -17.56 16 8 C 0.54 14.23 6.69 87.66 0.59 14.82 16 9 O -0.58 -19.66 14.78 -3.03 -0.04 -19.71 16 10 C -0.11 -2.18 2.98 -10.33 -0.03 -2.21 16 11 H 0.11 2.10 6.61 -2.39 -0.02 2.08 16 12 C -0.11 -1.72 6.50 31.47 0.20 -1.51 16 13 C 0.04 0.55 6.70 86.45 0.58 1.13 16 14 N -0.53 -9.68 5.55 -908.60 -5.04 -14.72 16 15 C 0.01 0.22 9.40 127.69 1.20 1.42 16 16 C 0.05 1.12 5.91 86.61 0.51 1.63 16 17 C -0.10 -2.84 4.84 30.41 0.15 -2.69 16 18 C 0.14 5.28 6.25 86.41 0.54 5.82 16 19 N -0.61 -29.11 2.98 -699.41 -2.08 -31.20 16 20 C -0.26 -13.78 9.57 84.03 0.80 -12.98 16 21 H 0.07 3.39 7.85 -2.91 -0.02 3.37 16 22 C -0.05 -2.82 5.06 84.86 0.43 -2.39 16 23 N -0.94 -55.26 11.05 21.65 0.24 -55.02 16 24 Si 0.96 44.50 29.57 68.60 2.03 46.53 16 25 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 C 0.18 8.60 4.93 86.25 0.43 9.02 16 29 C -0.11 -3.90 4.83 30.26 0.15 -3.76 16 30 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.05 1.37 6.75 -2.39 -0.02 1.36 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 2.13 6.19 -2.39 -0.01 2.12 16 34 H 0.09 2.17 7.68 -2.39 -0.02 2.15 16 35 H 0.10 1.57 7.99 -2.39 -0.02 1.55 16 36 H 0.09 1.69 6.61 -2.38 -0.02 1.68 16 37 H 0.06 1.12 7.84 -2.39 -0.02 1.11 16 38 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 0.71 7.73 -2.38 -0.02 0.69 16 40 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.03 0.41 8.01 -2.38 -0.02 0.39 16 44 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.04 1.14 7.08 -2.39 -0.02 1.12 16 46 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 47 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.02 0.62 7.62 -2.38 -0.02 0.61 16 49 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 50 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 51 H 0.05 2.49 6.10 -2.39 -0.01 2.48 16 52 H 0.00 -0.18 6.56 -2.38 -0.02 -0.20 16 53 H 0.05 1.67 7.82 -2.38 -0.02 1.66 16 54 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -67.31 398.98 0.48 -66.83 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.85 Total: 17.19 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 6.94 Total: 7.66 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -9.30 Total: -118.49 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.04 Total: -19.71 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.31 0.48 -66.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086956193.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.786 kcal (2) G-P(sol) polarization free energy of solvation -67.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds