Wall clock time and date at job start Tue Mar 31 2020 19:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 110.31358 * 2 1 4 4 C 1.55014 * 110.35661 * 122.20515 * 2 1 3 5 5 C 1.54536 * 101.52585 * 155.24588 * 4 2 1 6 6 C 1.53682 * 103.64466 * 325.16913 * 5 4 2 7 7 N 1.47180 * 107.11065 * 21.55004 * 6 5 4 8 8 C 1.34781 * 125.66050 * 181.46073 * 7 6 5 9 9 O 1.21287 * 119.99465 * 180.02562 * 8 7 6 10 10 C 1.50696 * 120.00379 * 0.05243 * 8 7 6 11 11 N 1.46898 * 109.47515 * 180.02562 * 10 8 7 12 12 C 1.48541 * 110.99577 * 52.60418 * 11 10 8 13 13 C 1.54938 * 103.22487 * 159.72161 * 12 11 10 14 14 C 1.54599 * 102.92347 * 322.58723 * 13 12 11 15 15 C 1.47896 * 111.00392 * 169.99706 * 11 10 8 16 16 C 1.52277 * 110.16873 * 83.59397 * 5 4 2 17 17 C 1.53316 * 109.41548 * 62.85316 * 16 5 4 18 18 N 1.46928 * 108.70910 * 53.51544 * 17 16 5 19 19 C 1.36944 * 120.56090 * 125.76866 * 18 17 16 20 20 H 1.07996 * 119.99889 * 332.11513 * 19 18 17 21 21 C 1.38817 * 119.99702 * 152.12212 * 19 18 17 22 22 N 1.31616 * 119.99839 * 144.11996 * 21 19 18 23 23 Si 1.86797 * 119.99759 * 324.12116 * 21 19 18 24 24 H 1.48509 * 109.46858 * 270.00050 * 23 21 19 25 25 H 1.48495 * 109.47409 * 29.99657 * 23 21 19 26 26 H 1.48494 * 109.47054 * 150.00574 * 23 21 19 27 27 C 1.46920 * 118.87021 * 306.04310 * 18 17 16 28 28 C 1.52270 * 110.17087 * 206.72888 * 5 4 2 29 29 H 1.09008 * 109.46844 * 297.78937 * 1 2 3 30 30 H 1.08993 * 109.47835 * 57.79323 * 1 2 3 31 31 H 1.08997 * 109.46809 * 177.79528 * 1 2 3 32 32 H 1.09001 * 111.01561 * 37.18579 * 4 2 1 33 33 H 1.09001 * 111.01855 * 273.30324 * 4 2 1 34 34 H 1.08997 * 109.91046 * 140.92030 * 6 5 4 35 35 H 1.09005 * 109.90983 * 262.18530 * 6 5 4 36 36 H 1.08998 * 109.46907 * 300.00180 * 10 8 7 37 37 H 1.08997 * 109.47044 * 59.99711 * 10 8 7 38 38 H 1.08997 * 110.66375 * 278.15272 * 12 11 10 39 39 H 1.08997 * 110.67080 * 41.28552 * 12 11 10 40 40 H 1.08992 * 110.72448 * 204.22507 * 13 12 11 41 41 H 1.09005 * 110.72229 * 80.94294 * 13 12 11 42 42 H 1.08997 * 110.30334 * 263.04229 * 14 13 12 43 43 H 1.08998 * 110.39375 * 140.91184 * 14 13 12 44 44 H 1.09004 * 109.91513 * 333.51712 * 15 11 10 45 45 H 1.09002 * 109.91343 * 94.60340 * 15 11 10 46 46 H 1.08997 * 109.47993 * 302.87119 * 16 5 4 47 47 H 1.08999 * 109.48731 * 182.84226 * 16 5 4 48 48 H 1.08999 * 109.59866 * 293.75015 * 17 16 5 49 49 H 1.08999 * 109.72283 * 173.36349 * 17 16 5 50 50 H 0.96995 * 120.00195 * 354.89999 * 22 21 19 51 51 H 1.08997 * 109.60229 * 173.72670 * 27 18 17 52 52 H 1.09001 * 109.59884 * 294.19169 * 27 18 17 53 53 H 1.09001 * 109.48009 * 57.13560 * 28 5 4 54 54 H 1.09007 * 109.47772 * 177.15425 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0223 0.0000 4 6 2.0693 -0.7746 1.2297 5 6 3.4659 -1.2104 0.7320 6 6 3.2493 -1.4797 -0.7654 7 7 2.0430 -0.7391 -1.1686 8 6 1.4981 -0.7362 -2.4013 9 8 0.4982 -0.0857 -2.6208 10 6 2.1307 -1.5417 -3.5068 11 7 1.3543 -1.3721 -4.7422 12 6 1.1650 0.0668 -5.0585 13 6 0.8305 0.0562 -6.5713 14 6 1.7428 -1.0652 -7.1192 15 6 2.0696 -1.9488 -5.9012 16 6 4.4708 -0.0846 0.9358 17 6 4.6065 0.2126 2.4337 18 7 4.9212 -1.0391 3.1358 19 6 6.0192 -1.1237 3.9499 20 1 6.8800 -0.4992 3.7621 21 6 6.0255 -2.0122 5.0165 22 7 7.1380 -2.6310 5.3508 23 14 4.4552 -2.3294 5.9772 24 1 4.3604 -1.3654 7.1029 25 1 3.2837 -2.1601 5.0806 26 1 4.4735 -3.7145 6.5120 27 6 4.0414 -2.2002 2.9449 28 6 3.9060 -2.4799 1.4484 29 1 -0.3633 0.4792 0.9092 30 1 -0.3634 0.5477 -0.8694 31 1 -0.3633 -1.0269 -0.0395 32 1 1.4452 -1.6405 1.4507 33 1 2.1503 -0.1213 2.0985 34 1 4.1093 -1.1261 -1.3343 35 1 3.1032 -2.5467 -0.9334 36 1 3.1516 -1.1964 -3.6693 37 1 2.1437 -2.5951 -3.2271 38 1 0.3363 0.4810 -4.4843 39 1 2.0817 0.6259 -4.8711 40 1 1.0797 1.0139 -7.0282 41 1 -0.2196 -0.1876 -6.7325 42 1 2.6567 -0.6403 -7.5345 43 1 1.2175 -1.6457 -7.8776 44 1 3.1437 -1.9425 -5.7152 45 1 1.7295 -2.9694 -6.0770 46 1 4.1246 0.8098 0.4177 47 1 5.4391 -0.3847 0.5355 48 1 3.6683 0.6182 2.8124 49 1 5.4079 0.9336 2.5946 50 1 7.9346 -2.5238 4.8079 51 1 4.4717 -3.0704 3.4404 52 1 3.0582 -1.9868 3.3643 53 1 3.1644 -3.2628 1.2892 54 1 4.8684 -2.8052 1.0533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086957300.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:56 Heat of formation + Delta-G solvation = -15.943937 kcal Electronic energy + Delta-G solvation = -30947.635555 eV Core-core repulsion = 27112.156629 eV Total energy + Delta-G solvation = -3835.478926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.86144 -40.44031 -39.00496 -37.48333 -34.87836 -33.75404 -32.96772 -32.42259 -31.92801 -29.74239 -28.80267 -27.49205 -27.05961 -25.23334 -24.37152 -23.06483 -22.61457 -22.08318 -21.68753 -20.04981 -19.88895 -18.82472 -17.98829 -17.48441 -17.00056 -16.65323 -16.55157 -16.14193 -15.90076 -15.62287 -15.35353 -15.20921 -14.88057 -14.81178 -14.50135 -14.17798 -14.12361 -13.99050 -13.72483 -13.60415 -13.28567 -13.11573 -13.09060 -13.02085 -12.84540 -12.51696 -12.40782 -12.25482 -12.19949 -12.17363 -12.03479 -11.84925 -11.69452 -11.58875 -11.45186 -11.29283 -11.07142 -11.01801 -10.40497 -10.35769 -9.64086 -9.40773 -8.94851 -8.53719 -5.38774 1.54109 1.59086 1.61153 1.77714 1.87648 2.62425 2.99766 3.03268 3.34447 3.43764 3.54548 3.74060 3.75270 3.77651 3.95881 4.07416 4.11086 4.17191 4.24514 4.28553 4.32829 4.36884 4.42711 4.47284 4.55608 4.59813 4.64089 4.70111 4.71114 4.73577 4.77606 4.83515 4.88687 4.93563 4.98715 4.99095 5.07164 5.11732 5.13711 5.20184 5.22517 5.23189 5.28318 5.30667 5.32599 5.34856 5.52016 5.58378 5.86953 5.88690 5.94311 6.31744 6.55772 6.96128 7.20120 7.69475 8.19310 8.82899 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.024507 B = 0.002627 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.253069 B =10654.159219 C =11126.045240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.138 3.862 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.053 4.053 6 C 0.114 3.886 7 N -0.612 5.612 8 C 0.525 3.475 9 O -0.555 6.555 10 C 0.034 3.966 11 N -0.520 5.520 12 C 0.033 3.967 13 C -0.124 4.124 14 C -0.127 4.127 15 C 0.032 3.968 16 C -0.107 4.107 17 C 0.141 3.859 18 N -0.612 5.612 19 C -0.345 4.345 20 H 0.025 0.975 21 C -0.049 4.049 22 N -0.939 5.939 23 Si 1.060 2.940 24 H -0.301 1.301 25 H -0.231 1.231 26 H -0.301 1.301 27 C 0.140 3.860 28 C -0.113 4.113 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.031 0.969 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.051 0.949 48 H 0.038 0.962 49 H 0.040 0.960 50 H 0.252 0.748 51 H 0.039 0.961 52 H 0.043 0.957 53 H 0.083 0.917 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.956 2.548 -23.031 26.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.054 4.054 6 C -0.009 4.009 7 N -0.346 5.346 8 C 0.315 3.685 9 O -0.434 6.434 10 C -0.097 4.097 11 N -0.245 5.245 12 C -0.094 4.094 13 C -0.162 4.162 14 C -0.165 4.165 15 C -0.096 4.096 16 C -0.146 4.146 17 C 0.016 3.984 18 N -0.337 5.337 19 C -0.475 4.475 20 H 0.043 0.957 21 C -0.247 4.247 22 N -0.579 5.579 23 Si 0.886 3.114 24 H -0.229 1.229 25 H -0.155 1.155 26 H -0.228 1.228 27 C 0.015 3.985 28 C -0.152 4.152 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.103 0.897 39 H 0.049 0.951 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.092 0.908 47 H 0.070 0.930 48 H 0.056 0.944 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.058 0.942 52 H 0.060 0.940 53 H 0.102 0.898 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.604 1.845 -21.860 26.354 hybrid contribution 2.362 1.254 -0.706 2.766 sum -12.242 3.099 -22.565 25.858 Atomic orbital electron populations 1.22006 0.93954 1.02055 1.02794 1.21922 0.94873 0.95385 0.84314 0.90996 1.22920 0.94894 1.00690 0.96810 1.20827 0.95257 0.95832 0.93454 1.22168 0.86863 0.97172 0.94686 1.48702 1.28511 1.48347 1.09051 1.20482 0.83853 0.81643 0.82520 1.90591 1.26401 1.44876 1.81505 1.22232 0.96075 1.01805 0.89544 1.64665 1.44187 1.14107 1.01557 1.23381 1.00668 0.88473 0.96871 1.22514 1.00387 0.99349 0.93921 1.22402 1.00194 0.96695 0.97250 1.23012 0.96933 0.99873 0.89744 1.21746 0.98130 0.97791 0.96908 1.21125 0.98044 0.87741 0.91498 1.44387 1.29197 1.07826 1.52274 1.19874 0.92926 1.24912 1.09767 0.95695 1.27162 1.04789 0.95531 0.97239 1.70999 1.03693 1.38728 1.44466 0.84073 0.75774 0.75114 0.76476 1.22908 1.15523 1.22812 1.21342 0.93232 0.89074 0.94890 1.21779 1.01127 0.96338 0.95953 0.90915 0.91758 0.93343 0.90061 0.89740 0.90418 0.89594 0.90612 0.86457 0.89662 0.95069 0.90121 0.91206 0.90514 0.89920 0.92846 0.89545 0.90828 0.92992 0.94438 0.94128 0.93914 0.94216 0.93958 0.89827 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.60 71.98 0.62 -2.80 16 2 C 0.14 3.09 3.44 45.49 0.16 3.25 16 3 H 0.07 1.65 7.75 -2.38 -0.02 1.63 16 4 C -0.12 -2.66 4.35 31.81 0.14 -2.52 16 5 C -0.05 -1.30 0.55 -51.91 -0.03 -1.33 16 6 C 0.11 2.22 5.67 86.48 0.49 2.72 16 7 N -0.61 -13.31 3.25 -788.65 -2.56 -15.87 16 8 C 0.53 12.36 7.34 87.66 0.64 13.01 16 9 O -0.55 -16.26 11.25 -3.05 -0.03 -16.29 16 10 C 0.03 0.62 4.71 85.56 0.40 1.03 16 11 N -0.52 -10.25 5.26 -887.59 -4.67 -14.92 16 12 C 0.03 0.69 5.30 86.65 0.46 1.14 16 13 C -0.12 -1.88 7.06 31.80 0.22 -1.65 16 14 C -0.13 -1.54 6.93 31.47 0.22 -1.32 16 15 C 0.03 0.45 6.69 86.45 0.58 1.03 16 16 C -0.11 -2.99 4.74 30.46 0.14 -2.84 16 17 C 0.14 5.07 6.19 86.40 0.53 5.60 16 18 N -0.61 -27.06 2.70 -699.54 -1.89 -28.95 16 19 C -0.35 -19.01 9.70 84.03 0.81 -18.20 16 20 H 0.03 1.53 8.06 -2.91 -0.02 1.51 16 21 C -0.05 -2.82 4.82 84.86 0.41 -2.41 16 22 N -0.94 -58.26 13.70 21.65 0.30 -57.96 16 23 Si 1.06 49.81 26.99 68.60 1.85 51.66 16 24 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 25 H -0.23 -9.32 4.73 99.48 0.47 -8.85 16 26 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 27 C 0.14 5.34 4.04 86.25 0.35 5.69 16 28 C -0.11 -3.26 4.70 30.30 0.14 -3.11 16 29 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.06 1.71 6.09 -2.39 -0.01 1.70 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.81 7.92 -2.39 -0.02 1.79 16 33 H 0.08 2.09 6.08 -2.39 -0.01 2.07 16 34 H 0.08 1.40 7.82 -2.39 -0.02 1.38 16 35 H 0.09 1.45 7.78 -2.38 -0.02 1.43 16 36 H 0.08 1.18 7.81 -2.39 -0.02 1.16 16 37 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.09 2.22 5.97 -2.39 -0.01 2.21 16 39 H 0.03 0.64 8.02 -2.39 -0.02 0.63 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 0.66 7.57 -2.38 -0.02 0.64 16 45 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.07 1.79 7.47 -2.39 -0.02 1.77 16 47 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.04 1.25 6.47 -2.39 -0.02 1.24 16 49 H 0.04 1.57 7.93 -2.39 -0.02 1.55 16 50 H 0.25 15.76 8.73 -92.71 -0.81 14.96 16 51 H 0.04 1.73 5.78 -2.39 -0.01 1.71 16 52 H 0.04 1.54 6.05 -2.39 -0.01 1.52 16 53 H 0.08 1.99 8.11 -2.39 -0.02 1.97 16 54 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -67.82 389.76 -0.13 -67.94 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.58 Total: 17.13 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 6.30 Total: -2.73 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -8.83 Total: -117.70 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.03 Total: -16.29 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 1.85 Total: 51.66 kcal Total: -67.82 -0.13 -67.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086957300.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.000 kcal (2) G-P(sol) polarization free energy of solvation -67.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds