Wall clock time and date at job start Tue Mar 31 2020 18:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 112.90473 * 2 1 4 4 C 1.53873 * 113.68373 * 228.45510 * 2 1 3 5 5 H 1.09001 * 113.63845 * 104.86940 * 4 2 1 6 6 N 1.46498 * 113.63797 * 333.97617 * 4 2 1 7 7 C 1.34784 * 120.00023 * 154.99929 * 6 4 2 8 8 O 1.21283 * 119.99865 * 0.02562 * 7 6 4 9 9 C 1.50694 * 120.00081 * 180.02562 * 7 6 4 10 10 N 1.46903 * 109.47092 * 180.02562 * 9 7 6 11 11 C 1.48535 * 111.00002 * 52.60327 * 10 9 7 12 12 C 1.54939 * 103.22604 * 159.72112 * 11 10 9 13 13 C 1.54599 * 102.91991 * 322.58728 * 12 11 10 14 14 C 1.47907 * 110.99916 * 169.99951 * 10 9 7 15 15 C 1.52246 * 86.55484 * 218.61535 * 4 2 1 16 16 H 1.09003 * 113.67438 * 142.24846 * 15 4 2 17 17 C 1.53061 * 111.70829 * 272.52427 * 15 4 2 18 18 C 1.53021 * 109.41078 * 147.20324 * 17 15 4 19 19 C 1.51666 * 109.37208 * 295.88631 * 18 17 15 20 20 N 1.45882 * 110.60385 * 56.22035 * 19 18 17 21 21 C 1.36939 * 118.48438 * 142.43005 * 20 19 18 22 22 H 1.08001 * 119.99918 * 204.34700 * 21 20 19 23 23 C 1.38809 * 119.99921 * 24.34582 * 21 20 19 24 24 N 1.31619 * 120.00061 * 33.66465 * 23 21 20 25 25 Si 1.86802 * 119.99867 * 213.65984 * 23 21 20 26 26 H 1.48499 * 109.47082 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.47483 * 300.00242 * 25 23 21 28 28 H 1.48503 * 109.47062 * 60.00462 * 25 23 21 29 29 C 1.45095 * 123.03113 * 322.15305 * 20 19 18 30 30 H 1.09006 * 112.25557 * 156.06128 * 29 20 19 31 31 H 1.09006 * 109.46518 * 288.57733 * 1 2 3 32 32 H 1.08999 * 109.47236 * 48.57703 * 1 2 3 33 33 H 1.08998 * 109.47141 * 168.57824 * 1 2 3 34 34 H 1.08995 * 109.46995 * 156.46001 * 3 2 1 35 35 H 1.08996 * 109.47071 * 276.46128 * 3 2 1 36 36 H 1.09000 * 109.46383 * 36.45795 * 3 2 1 37 37 H 0.96997 * 120.00406 * 335.00273 * 6 4 2 38 38 H 1.08998 * 109.46998 * 300.00255 * 9 7 6 39 39 H 1.09003 * 109.47143 * 60.00326 * 9 7 6 40 40 H 1.09000 * 110.66387 * 278.15576 * 11 10 9 41 41 H 1.09004 * 110.66478 * 41.28386 * 11 10 9 42 42 H 1.09001 * 110.72532 * 204.22695 * 12 11 10 43 43 H 1.09001 * 110.72212 * 80.94374 * 12 11 10 44 44 H 1.09006 * 110.30411 * 263.04138 * 13 12 11 45 45 H 1.08998 * 110.30808 * 140.87601 * 13 12 11 46 46 H 1.08994 * 109.91836 * 333.50905 * 14 10 9 47 47 H 1.09004 * 109.91622 * 94.60424 * 14 10 9 48 48 H 1.08994 * 109.48385 * 267.19144 * 17 15 4 49 49 H 1.09003 * 109.47685 * 27.22975 * 17 15 4 50 50 H 1.09003 * 109.55859 * 55.19262 * 18 17 15 51 51 H 1.08997 * 109.55862 * 175.51943 * 18 17 15 52 52 H 1.09008 * 107.60571 * 296.77054 * 19 18 17 53 53 H 1.09000 * 110.45907 * 177.49606 * 19 18 17 54 54 H 0.97001 * 119.99819 * 5.75065 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1481 -0.9345 -1.0546 5 1 2.5583 -0.4094 -1.9172 6 7 1.2796 -2.0533 -1.4293 7 6 1.4203 -2.6416 -2.6338 8 8 2.2661 -2.2450 -3.4073 9 6 0.5265 -3.7920 -3.0194 10 7 0.8776 -4.2538 -4.3691 11 6 2.3313 -4.5409 -4.4720 12 6 2.4217 -5.4750 -5.7048 13 6 1.1497 -6.3439 -5.5742 14 6 0.1919 -5.5245 -4.6896 15 6 3.1988 -1.2725 -0.0059 16 1 3.5020 -2.3195 -0.0117 17 6 4.3736 -0.2922 -0.0452 18 6 4.9280 -0.1059 1.3688 19 6 3.8696 0.5387 2.2432 20 7 2.6455 -0.2548 2.2369 21 6 1.9316 -0.3634 3.4004 22 1 1.2804 -1.2107 3.5573 23 6 2.0448 0.6154 4.3781 24 7 2.2364 1.8710 4.0332 25 14 1.9252 0.1504 6.1834 26 1 2.0778 1.3683 7.0193 27 1 0.6022 -0.4698 6.4483 28 1 3.0013 -0.8168 6.5178 29 6 2.1463 -0.9293 1.0532 30 1 1.5033 -1.7742 1.2998 31 1 -0.3632 0.3274 0.9742 32 1 -0.3634 0.6799 -0.7706 33 1 -0.3633 -1.0073 -0.2035 34 1 3.1347 1.3774 0.4104 35 1 2.1604 1.7891 -1.0211 36 1 1.5055 2.0657 0.6107 37 1 0.6034 -2.3706 -0.8106 38 1 0.6595 -4.6089 -2.3102 39 1 -0.5131 -3.4647 -3.0060 40 1 2.8936 -3.6229 -4.6429 41 1 2.6872 -5.0502 -3.5764 42 1 3.3180 -6.0934 -5.6554 43 1 2.4009 -4.8972 -6.6289 44 1 1.3878 -7.2936 -5.0951 45 1 0.7059 -6.5148 -6.5550 46 1 -0.0252 -6.0710 -3.7719 47 1 -0.7336 -5.3213 -5.2283 48 1 5.1557 -0.6878 -0.6931 49 1 4.0327 0.6684 -0.4314 50 1 5.1899 -1.0770 1.7890 51 1 5.8134 0.5287 1.3330 52 1 3.6622 1.5279 1.8348 53 1 4.2306 0.6394 3.2668 54 1 2.2152 2.1256 3.0975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087317198.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:59 Heat of formation + Delta-G solvation = 17.461441 kcal Electronic energy + Delta-G solvation = -31336.783651 eV Core-core repulsion = 27502.753291 eV Total energy + Delta-G solvation = -3834.030360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.60164 -40.80455 -38.99002 -37.20533 -35.01510 -34.14989 -33.18737 -32.15903 -31.53882 -29.73138 -28.49338 -27.97320 -27.02775 -25.69778 -24.23265 -22.88359 -22.25528 -21.70227 -21.44530 -20.88263 -19.50128 -19.07342 -18.08783 -17.42878 -16.88495 -16.70175 -16.40015 -16.27376 -16.01049 -15.59452 -15.41026 -15.15175 -14.83619 -14.67572 -14.50220 -14.20724 -14.05814 -13.70393 -13.62573 -13.39992 -13.33561 -13.18792 -13.12043 -12.93985 -12.79098 -12.51199 -12.41828 -12.22158 -12.18154 -11.97429 -11.92923 -11.83224 -11.65903 -11.52201 -11.45002 -11.30656 -10.95157 -10.77210 -10.63794 -10.21110 -9.91997 -9.40312 -8.77657 -8.20214 -5.25184 1.59100 1.59707 1.65119 1.84042 2.00913 2.68706 3.06437 3.19710 3.45267 3.58360 3.62092 3.69252 3.76168 3.85756 3.92627 3.96960 4.09251 4.14196 4.28320 4.30788 4.34153 4.36358 4.40493 4.45597 4.59954 4.63696 4.66756 4.69204 4.75039 4.80915 4.82044 4.89604 4.94481 4.95143 4.99270 5.00162 5.02284 5.11429 5.17365 5.18450 5.25150 5.28050 5.30530 5.32229 5.39175 5.46366 5.66036 5.68277 5.86729 5.95584 5.96405 6.47866 6.55760 7.19362 7.25402 7.91836 8.26925 9.04084 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.020300 B = 0.002816 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.008885 B = 9941.837974 C =10247.508788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.113 4.113 3 C -0.135 4.135 4 C 0.148 3.852 5 H 0.088 0.912 6 N -0.699 5.699 7 C 0.512 3.488 8 O -0.562 6.562 9 C 0.031 3.969 10 N -0.521 5.521 11 C 0.032 3.968 12 C -0.124 4.124 13 C -0.127 4.127 14 C 0.032 3.968 15 C -0.123 4.123 16 H 0.069 0.931 17 C -0.106 4.106 18 C -0.126 4.126 19 C 0.162 3.838 20 N -0.583 5.583 21 C -0.366 4.366 22 H 0.047 0.953 23 C -0.062 4.062 24 N -0.929 5.929 25 Si 1.096 2.904 26 H -0.296 1.296 27 H -0.279 1.279 28 H -0.286 1.286 29 C 0.176 3.824 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.030 0.970 37 H 0.410 0.590 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.032 0.968 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.056 0.944 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.082 0.918 50 H 0.052 0.948 51 H 0.078 0.922 52 H 0.011 0.989 53 H 0.029 0.971 54 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -14.327 -16.525 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.117 4.117 3 C -0.192 4.192 4 C 0.041 3.959 5 H 0.106 0.894 6 N -0.351 5.351 7 C 0.300 3.700 8 O -0.441 6.441 9 C -0.100 4.100 10 N -0.246 5.246 11 C -0.096 4.096 12 C -0.162 4.162 13 C -0.165 4.165 14 C -0.095 4.095 15 C -0.144 4.144 16 H 0.088 0.912 17 C -0.143 4.143 18 C -0.165 4.165 19 C 0.037 3.963 20 N -0.303 5.303 21 C -0.496 4.496 22 H 0.064 0.936 23 C -0.261 4.261 24 N -0.570 5.570 25 Si 0.923 3.077 26 H -0.222 1.222 27 H -0.205 1.205 28 H -0.212 1.212 29 C 0.067 3.933 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.248 0.752 38 H 0.101 0.899 39 H 0.144 0.856 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.071 0.929 51 H 0.097 0.903 52 H 0.029 0.971 53 H 0.048 0.952 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.995 -13.068 -15.870 20.654 hybrid contribution -0.338 -0.851 -0.178 0.933 sum -2.334 -13.918 -16.048 21.371 Atomic orbital electron populations 1.21523 0.94190 1.01681 1.00364 1.22926 0.95983 0.95865 0.96972 1.22023 1.02479 0.94274 1.00377 1.21455 0.91171 0.87642 0.95588 0.89405 1.45665 1.37804 1.34152 1.17508 1.21006 0.84056 0.84222 0.80704 1.90632 1.37138 1.64937 1.51352 1.22279 1.00574 0.95601 0.91577 1.64663 1.06754 1.29372 1.23804 1.23385 0.89292 0.99585 0.97327 1.22516 0.98602 0.97375 0.97741 1.22406 0.95033 0.98252 1.00829 1.23022 0.98410 0.88426 0.99682 1.22821 0.95746 0.99272 0.96526 0.91238 1.21583 0.96486 0.99692 0.96546 1.21573 0.98180 1.00942 0.95791 1.20374 0.86012 0.92925 0.96983 1.43394 1.22125 1.58035 1.06703 1.20072 1.27514 1.05561 0.96450 0.93550 1.26708 0.99712 0.92132 1.07516 1.70892 1.49920 1.16567 1.19604 0.83101 0.76949 0.74854 0.72809 1.22200 1.20456 1.21247 1.21475 0.93662 0.93587 0.84598 0.91463 0.94787 0.92733 0.91286 0.89578 0.92258 0.95117 0.75227 0.89862 0.85600 0.89997 0.94939 0.90180 0.91302 0.90419 0.89904 0.92539 0.89413 0.90992 0.89950 0.92941 0.90331 0.97122 0.95215 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.76 8.97 71.98 0.65 -3.12 16 2 C -0.11 -3.84 1.34 -51.80 -0.07 -3.91 16 3 C -0.13 -4.90 7.28 71.98 0.52 -4.37 16 4 C 0.15 4.44 3.31 45.03 0.15 4.59 16 5 H 0.09 2.86 7.31 -2.39 -0.02 2.85 16 6 N -0.70 -17.20 4.70 -442.34 -2.08 -19.28 16 7 C 0.51 13.03 7.54 87.65 0.66 13.69 16 8 O -0.56 -18.51 13.12 -3.04 -0.04 -18.55 16 9 C 0.03 0.56 5.52 85.55 0.47 1.03 16 10 N -0.52 -10.65 5.26 -887.56 -4.67 -15.32 16 11 C 0.03 0.70 5.30 86.65 0.46 1.16 16 12 C -0.12 -2.04 7.06 31.80 0.22 -1.82 16 13 C -0.13 -1.61 6.93 31.47 0.22 -1.39 16 14 C 0.03 0.45 6.70 86.44 0.58 1.03 16 15 C -0.12 -4.01 4.04 -11.00 -0.04 -4.06 16 16 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 17 C -0.11 -3.37 5.14 30.62 0.16 -3.21 16 18 C -0.13 -4.50 5.96 30.16 0.18 -4.33 16 19 C 0.16 7.35 3.99 86.06 0.34 7.70 16 20 N -0.58 -27.33 2.57 -684.27 -1.76 -29.09 16 21 C -0.37 -19.61 9.28 84.03 0.78 -18.83 16 22 H 0.05 2.52 7.97 -2.91 -0.02 2.49 16 23 C -0.06 -3.41 4.34 84.86 0.37 -3.05 16 24 N -0.93 -54.80 12.66 21.65 0.27 -54.53 16 25 Si 1.10 50.19 30.03 68.60 2.06 52.25 16 26 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 27 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 28 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 29 C 0.18 6.72 3.44 45.45 0.16 6.87 16 30 H 0.07 2.60 7.85 -2.38 -0.02 2.58 16 31 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.75 5.91 -2.39 -0.01 1.74 16 34 H 0.09 3.28 1.85 -2.39 0.00 3.27 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.03 1.25 8.04 -2.39 -0.02 1.23 16 37 H 0.41 8.46 6.80 -92.71 -0.63 7.83 16 38 H 0.08 1.22 7.81 -2.39 -0.02 1.20 16 39 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 2.34 5.97 -2.39 -0.01 2.32 16 41 H 0.03 0.72 8.02 -2.39 -0.02 0.70 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 0.67 7.57 -2.39 -0.02 0.66 16 47 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.08 2.64 4.56 -2.39 -0.01 2.63 16 50 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 52 H 0.01 0.53 4.97 -2.38 -0.01 0.52 16 53 H 0.03 1.54 6.86 -2.39 -0.02 1.52 16 54 H 0.26 15.44 6.94 -92.71 -0.64 14.80 16 Total: -1.00 -66.41 390.04 -0.02 -66.43 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.39 Total: 30.09 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 5.80 Total: -12.01 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -8.23 Total: -118.21 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.04 Total: -18.55 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.06 Total: 52.25 kcal Total: -66.41 -0.02 -66.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087317198.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.892 kcal (2) G-P(sol) polarization free energy of solvation -66.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds