Wall clock time and date at job start Tue Mar 31 2020 19:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52994 * 109.46874 * 2 1 4 4 H 1.09002 * 110.00184 * 305.02763 * 3 2 1 5 5 C 1.54334 * 109.98785 * 183.99110 * 3 2 1 6 6 H 1.08999 * 110.66930 * 337.04870 * 5 3 2 7 7 N 1.46500 * 110.85019 * 100.20074 * 5 3 2 8 8 C 1.34783 * 120.00156 * 200.14719 * 7 5 3 9 9 O 1.21279 * 119.99695 * 359.97438 * 8 7 5 10 10 C 1.51486 * 120.00024 * 179.97438 * 8 7 5 11 11 C 1.52499 * 108.85596 * 299.17424 * 10 8 7 12 12 C 1.52150 * 112.51405 * 188.49615 * 11 10 8 13 13 C 1.52270 * 112.66497 * 45.30803 * 12 11 10 14 14 N 1.45832 * 112.45533 * 313.41046 * 13 12 11 15 15 C 1.45838 * 114.02955 * 289.01493 * 14 13 12 16 16 C 1.52275 * 112.21804 * 70.23662 * 15 14 13 17 17 C 1.52155 * 112.56518 * 47.17043 * 16 15 14 18 18 C 1.46514 * 112.07255 * 57.48519 * 14 13 12 19 19 C 1.55157 * 103.02223 * 218.66553 * 5 3 2 20 20 C 1.54908 * 101.58341 * 35.30766 * 19 5 3 21 21 N 1.47018 * 109.88543 * 66.12845 * 3 2 1 22 22 C 1.36939 * 125.64555 * 298.39066 * 21 3 2 23 23 H 1.07995 * 120.00202 * 332.51071 * 22 21 3 24 24 C 1.38813 * 120.00135 * 152.51116 * 22 21 3 25 25 N 1.31617 * 120.00522 * 170.71686 * 24 22 21 26 26 Si 1.86803 * 119.99926 * 350.71975 * 24 22 21 27 27 H 1.48497 * 109.47375 * 185.75585 * 26 24 22 28 28 H 1.48500 * 109.47165 * 65.75027 * 26 24 22 29 29 H 1.48506 * 109.46676 * 305.75276 * 26 24 22 30 30 H 1.08997 * 109.46779 * 52.50512 * 1 2 3 31 31 H 1.09003 * 109.46893 * 172.50507 * 1 2 3 32 32 H 1.09001 * 109.46927 * 292.50601 * 1 2 3 33 33 H 1.08992 * 109.46945 * 239.99928 * 2 1 3 34 34 H 1.09002 * 109.46374 * 119.99924 * 2 1 3 35 35 H 0.97003 * 120.00183 * 20.13985 * 7 5 3 36 36 H 1.09707 * 109.04024 * 309.87305 * 11 10 8 37 37 H 1.09678 * 109.08656 * 67.05491 * 11 10 8 38 38 H 1.08681 * 110.93551 * 280.35426 * 12 11 10 39 39 H 1.10597 * 107.97575 * 164.29685 * 12 11 10 40 40 H 1.09678 * 109.04356 * 192.14096 * 13 12 11 41 41 H 1.09619 * 109.14328 * 74.86467 * 13 12 11 42 42 H 1.09668 * 109.20188 * 191.30817 * 15 14 13 43 43 H 1.09579 * 109.36368 * 308.88104 * 15 14 13 44 44 H 1.10541 * 107.93115 * 166.33402 * 16 15 14 45 45 H 1.08695 * 110.77896 * 282.33247 * 16 15 14 46 46 H 1.09713 * 109.20777 * 193.44517 * 17 16 15 47 47 H 1.09705 * 109.22361 * 76.15698 * 17 16 15 48 48 H 1.08870 * 109.92879 * 175.82085 * 18 14 13 49 49 H 1.08893 * 109.88987 * 54.81222 * 18 14 13 50 50 H 1.09010 * 111.00295 * 277.23598 * 19 5 3 51 51 H 1.09002 * 111.00640 * 153.38084 * 19 5 3 52 52 H 1.08993 * 110.37022 * 204.15743 * 20 19 5 53 53 H 1.08995 * 110.46219 * 81.87417 * 20 19 5 54 54 H 0.97000 * 119.99488 * 5.61869 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6100 1.9899 -0.8387 5 6 3.5800 1.4576 -0.1009 6 1 3.9977 0.5134 0.2483 7 7 4.0098 1.7364 -1.4734 8 6 5.2538 1.4028 -1.8710 9 8 6.0174 0.8723 -1.0923 10 6 5.6980 1.6905 -3.2904 11 6 4.7931 0.9300 -4.2538 12 6 5.2888 0.9925 -5.6909 13 6 6.7856 0.7384 -5.8069 14 7 7.5570 1.4984 -4.8302 15 6 7.6026 2.9319 -5.0949 16 6 6.2576 3.6046 -4.8561 17 6 5.6258 3.1938 -3.5343 18 6 7.1422 1.2088 -3.4552 19 6 3.9810 2.6191 0.8464 20 6 2.9166 2.4902 1.9645 21 7 1.6792 2.1004 1.2643 22 6 0.4048 2.3111 1.7189 23 1 -0.4096 2.4106 1.0166 24 6 0.1596 2.3967 3.0825 25 7 -1.0230 2.7787 3.5159 26 14 1.5082 1.9698 4.3026 27 1 0.9580 2.0060 5.6814 28 1 2.6128 2.9552 4.1844 29 1 2.0259 0.6086 4.0118 30 1 -0.3633 0.6255 -0.8154 31 1 -0.3633 -1.0189 -0.1341 32 1 -0.3633 0.3934 0.9494 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.3992 2.1609 -2.0962 36 1 4.7339 -0.1186 -3.9369 37 1 3.7808 1.3489 -4.2013 38 1 5.0198 1.9384 -6.1536 39 1 4.7659 0.2064 -6.2669 40 1 7.1172 1.0080 -6.8170 41 1 6.9804 -0.3315 -5.6688 42 1 8.3553 3.3948 -4.4455 43 1 7.9106 3.1000 -6.1330 44 1 6.4231 4.6973 -4.8319 45 1 5.5800 3.4170 -5.6850 46 1 4.5748 3.5083 -3.5234 47 1 6.1343 3.7148 -2.7136 48 1 7.7870 1.7361 -2.7542 49 1 7.1940 0.1369 -3.2706 50 1 3.9015 3.5813 0.3403 51 1 4.9851 2.4702 1.2438 52 1 2.7809 3.4456 2.4711 53 1 3.2064 1.7202 2.6795 54 1 -1.7472 2.9217 2.8866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087619706.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:51 Heat of formation + Delta-G solvation = -41.316701 kcal Electronic energy + Delta-G solvation = -31539.898590 eV Core-core repulsion = 27703.319419 eV Total energy + Delta-G solvation = -3836.579172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -42.21210 -40.53984 -39.21424 -35.78500 -34.71467 -34.17473 -34.02566 -33.74876 -31.78741 -30.87677 -28.75168 -27.36609 -26.14710 -24.92012 -24.16504 -23.87189 -22.44719 -22.36301 -21.58095 -20.85625 -19.53126 -19.42405 -18.24011 -17.74816 -16.87275 -16.61395 -16.26966 -16.05819 -16.00479 -15.52227 -15.46121 -15.28152 -15.03038 -14.84364 -14.59704 -14.19745 -14.09387 -13.97507 -13.69122 -13.59709 -13.52833 -13.43027 -13.17486 -13.03710 -12.53326 -12.49366 -12.42629 -12.36490 -12.22834 -11.95667 -11.89638 -11.85338 -11.80434 -11.64873 -11.59736 -11.41586 -11.14219 -10.74870 -10.63672 -10.62360 -10.04874 -9.09719 -9.01674 -8.45373 -5.51762 1.42544 1.51166 1.59441 1.69384 2.04777 2.54426 3.03682 3.18089 3.27182 3.50444 3.59093 3.61286 3.64794 3.75089 3.97055 4.06112 4.07229 4.09607 4.19455 4.21679 4.23618 4.33934 4.41200 4.42635 4.50451 4.52214 4.53001 4.60334 4.69242 4.82792 4.83488 4.88208 4.94641 4.95854 4.99122 5.00016 5.00319 5.06438 5.09458 5.10980 5.11503 5.12882 5.16473 5.28204 5.31252 5.46737 5.53581 5.60096 5.76969 6.17011 6.20601 6.40124 6.50530 6.86299 7.20211 7.46920 8.17253 8.94260 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.022325 B = 0.003027 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.897474 B = 9248.265245 C = 9640.284531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C 0.157 3.843 4 H 0.048 0.952 5 C 0.148 3.852 6 H 0.083 0.917 7 N -0.703 5.703 8 C 0.523 3.477 9 O -0.577 6.577 10 C -0.091 4.091 11 C -0.101 4.101 12 C -0.146 4.146 13 C 0.063 3.937 14 N -0.553 5.553 15 C 0.063 3.937 16 C -0.146 4.146 17 C -0.100 4.100 18 C 0.096 3.904 19 C -0.127 4.127 20 C 0.102 3.898 21 N -0.618 5.618 22 C -0.280 4.280 23 H 0.050 0.950 24 C -0.071 4.071 25 N -0.968 5.968 26 Si 1.096 2.904 27 H -0.313 1.313 28 H -0.255 1.255 29 H -0.285 1.285 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.410 0.590 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.054 0.946 48 H 0.067 0.933 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.052 0.948 53 H 0.023 0.977 54 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.734 -1.107 -23.418 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C 0.051 3.949 4 H 0.066 0.934 5 C 0.042 3.958 6 H 0.101 0.899 7 N -0.354 5.354 8 C 0.310 3.690 9 O -0.456 6.456 10 C -0.096 4.096 11 C -0.139 4.139 12 C -0.185 4.185 13 C -0.065 4.065 14 N -0.273 5.273 15 C -0.065 4.065 16 C -0.185 4.185 17 C -0.138 4.138 18 C -0.033 4.033 19 C -0.166 4.166 20 C -0.023 4.023 21 N -0.345 5.345 22 C -0.409 4.409 23 H 0.068 0.932 24 C -0.265 4.265 25 N -0.612 5.612 26 Si 0.924 3.076 27 H -0.242 1.242 28 H -0.180 1.180 29 H -0.212 1.212 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.247 0.753 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.099 0.901 51 H 0.098 0.902 52 H 0.071 0.929 53 H 0.041 0.959 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 18.030 -1.641 -21.336 27.982 hybrid contribution -2.263 0.419 -1.054 2.531 sum 15.767 -1.222 -22.390 27.411 Atomic orbital electron populations 1.21776 0.96195 1.00206 1.01943 1.21831 0.96368 0.97039 1.00619 1.21286 0.91508 0.92550 0.89563 0.93398 1.21735 0.93601 0.98289 0.82207 0.89888 1.45906 1.14824 1.62098 1.12567 1.21287 0.80974 0.76603 0.90134 1.90681 1.53975 1.44436 1.56460 1.21235 0.99496 0.98542 0.90341 1.21318 0.98308 0.99614 0.94632 1.21947 0.97637 1.03979 0.94937 1.21855 0.90394 0.98281 0.95937 1.60219 1.55503 1.09464 1.02133 1.21858 0.96025 0.85752 1.02835 1.21947 0.98309 1.01624 0.96638 1.21301 1.02323 0.91480 0.98743 1.21617 0.91136 1.00775 0.89791 1.23025 0.98161 0.99055 0.96351 1.22238 0.86916 0.97773 0.95353 1.44826 1.01120 1.67084 1.21431 1.19795 0.84262 1.45073 0.91757 0.93219 1.27032 1.02447 0.98858 0.98170 1.71019 1.03070 1.49929 1.37194 0.83488 0.73408 0.77506 0.73190 1.24221 1.17996 1.21173 0.93701 0.92930 0.93309 0.90867 0.93977 0.75341 0.92646 0.90585 0.90153 0.90645 0.89239 0.91359 0.91444 0.89164 0.90716 0.90108 0.90687 0.92764 0.91492 0.91452 0.90132 0.90218 0.92939 0.95909 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 9.05 71.99 0.65 -4.75 16 2 C -0.12 -4.19 5.47 30.60 0.17 -4.02 16 3 C 0.16 5.68 3.00 45.34 0.14 5.82 16 4 H 0.05 1.68 7.69 -2.39 -0.02 1.66 16 5 C 0.15 4.64 2.76 46.18 0.13 4.76 16 6 H 0.08 2.86 7.40 -2.39 -0.02 2.85 16 7 N -0.70 -17.13 5.01 -435.99 -2.19 -19.31 16 8 C 0.52 13.26 6.35 87.91 0.56 13.82 16 9 O -0.58 -19.30 15.65 -3.03 -0.05 -19.35 16 10 C -0.09 -1.65 0.57 -52.98 -0.03 -1.68 16 11 C -0.10 -1.48 4.51 30.15 0.14 -1.35 16 12 C -0.15 -1.57 5.12 30.07 0.15 -1.42 16 13 C 0.06 0.76 5.77 86.26 0.50 1.26 16 14 N -0.55 -8.59 4.79 -902.24 -4.32 -12.90 16 15 C 0.06 0.77 5.77 86.26 0.50 1.27 16 16 C -0.15 -1.61 5.13 30.08 0.15 -1.46 16 17 C -0.10 -1.51 4.50 30.14 0.14 -1.38 16 18 C 0.10 1.92 4.18 86.42 0.36 2.28 16 19 C -0.13 -4.18 6.77 31.99 0.22 -3.96 16 20 C 0.10 4.22 4.51 86.85 0.39 4.61 16 21 N -0.62 -28.01 2.89 -668.26 -1.93 -29.94 16 22 C -0.28 -15.17 7.70 84.03 0.65 -14.52 16 23 H 0.05 2.91 7.41 -2.91 -0.02 2.89 16 24 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 25 N -0.97 -61.14 13.70 21.65 0.30 -60.85 16 26 Si 1.10 53.85 24.67 68.60 1.69 55.54 16 27 H -0.31 -16.02 7.11 99.48 0.71 -15.32 16 28 H -0.25 -11.17 5.54 99.48 0.55 -10.61 16 29 H -0.28 -13.50 7.03 99.48 0.70 -12.80 16 30 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 2.27 5.48 -2.39 -0.01 2.26 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.41 8.10 7.42 -92.71 -0.69 7.42 16 36 H 0.05 0.95 8.14 -2.01 -0.02 0.94 16 37 H 0.08 0.98 7.80 -2.03 -0.02 0.97 16 38 H 0.08 0.72 5.70 -2.56 -0.01 0.71 16 39 H 0.07 0.69 8.27 -1.53 -0.01 0.67 16 40 H 0.09 0.80 8.11 -2.03 -0.02 0.78 16 41 H 0.07 0.89 8.19 -2.06 -0.02 0.87 16 42 H 0.07 0.90 8.20 -2.03 -0.02 0.88 16 43 H 0.09 0.82 8.11 -2.08 -0.02 0.80 16 44 H 0.07 0.71 8.27 -1.56 -0.01 0.70 16 45 H 0.08 0.74 5.68 -2.55 -0.01 0.72 16 46 H 0.07 1.01 7.80 -2.01 -0.02 0.99 16 47 H 0.05 0.97 8.14 -2.01 -0.02 0.95 16 48 H 0.07 1.55 8.07 -2.46 -0.02 1.53 16 49 H 0.07 1.55 8.08 -2.44 -0.02 1.53 16 50 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 51 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 52 H 0.05 2.29 6.46 -2.39 -0.02 2.27 16 53 H 0.02 0.99 5.48 -2.39 -0.01 0.97 16 54 H 0.25 15.70 8.73 -92.71 -0.81 14.89 16 Total: -1.00 -68.53 386.52 -1.20 -69.73 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.02 Total: 21.46 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 5.27 Total: -4.38 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -8.14 Total: -123.01 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.05 Total: -19.35 kcal Atomic # 14 Polarization: 53.85 SS G_CDS: 1.69 Total: 55.54 kcal Total: -68.53 -1.20 -69.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087619706.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.418 kcal (2) G-P(sol) polarization free energy of solvation -68.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds