Wall clock time and date at job start Tue Mar 31 2020 19:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47069 * 2 1 4 4 N 1.46904 * 109.47004 * 180.02562 * 3 2 1 5 5 C 1.48531 * 110.99745 * 52.60740 * 4 3 2 6 6 C 1.54939 * 103.22612 * 159.72011 * 5 4 3 7 7 C 1.54594 * 102.92150 * 322.58514 * 6 5 4 8 8 C 1.47899 * 110.99918 * 170.00158 * 4 3 2 9 9 H 1.08999 * 110.08706 * 333.60132 * 8 4 3 10 10 C 1.50699 * 109.92010 * 94.80415 * 8 4 3 11 11 O 1.21285 * 119.99667 * 359.04466 * 10 8 4 12 12 N 1.34774 * 120.00623 * 179.03911 * 10 8 4 13 13 C 1.47646 * 125.73379 * 179.97438 * 12 10 8 14 14 C 1.55915 * 104.41945 * 155.04187 * 13 12 10 15 15 H 1.08991 * 113.52758 * 159.11823 * 14 13 12 16 16 C 1.53060 * 106.18197 * 283.23340 * 14 13 12 17 17 C 1.52782 * 110.81121 * 163.41361 * 16 14 13 18 18 N 1.47195 * 107.80169 * 302.26390 * 17 16 14 19 19 C 1.36937 * 121.32841 * 237.99476 * 18 17 16 20 20 H 1.08006 * 120.00308 * 151.96541 * 19 18 17 21 21 C 1.38811 * 119.99872 * 331.96208 * 19 18 17 22 22 N 1.31622 * 119.99832 * 159.19882 * 21 19 18 23 23 Si 1.86799 * 120.00231 * 339.20425 * 21 19 18 24 24 H 1.48492 * 109.47003 * 94.33973 * 23 21 19 25 25 H 1.48504 * 109.46793 * 214.33875 * 23 21 19 26 26 H 1.48496 * 109.46834 * 334.33452 * 23 21 19 27 27 C 1.46726 * 117.34802 * 57.97580 * 18 17 16 28 28 C 1.50972 * 111.06160 * 307.68027 * 27 18 17 29 29 H 1.08998 * 108.98805 * 167.66056 * 28 27 18 30 30 C 1.47461 * 125.72997 * 0.02562 * 12 10 8 31 31 H 1.09003 * 109.47466 * 59.99503 * 1 2 3 32 32 H 1.09003 * 109.46984 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47068 * 299.99630 * 1 2 3 34 34 H 1.09007 * 109.47068 * 240.00370 * 2 1 3 35 35 H 1.08996 * 109.47217 * 120.00763 * 2 1 3 36 36 H 1.09000 * 109.47184 * 60.00364 * 3 2 1 37 37 H 1.08996 * 109.47724 * 300.00452 * 3 2 1 38 38 H 1.09005 * 110.66868 * 41.28760 * 5 4 3 39 39 H 1.08999 * 110.66795 * 278.15026 * 5 4 3 40 40 H 1.09006 * 110.72555 * 204.22886 * 6 5 4 41 41 H 1.08993 * 110.72503 * 80.94093 * 6 5 4 42 42 H 1.09007 * 110.31020 * 263.04320 * 7 6 5 43 43 H 1.08997 * 110.31073 * 140.87255 * 7 6 5 44 44 H 1.08998 * 110.44202 * 36.31220 * 13 12 10 45 45 H 1.08995 * 110.44362 * 273.77377 * 13 12 10 46 46 H 1.09001 * 109.21535 * 43.06637 * 16 14 13 47 47 H 1.09003 * 109.17530 * 283.72805 * 16 14 13 48 48 H 1.09004 * 109.79330 * 182.68921 * 17 16 14 49 49 H 1.09003 * 109.84103 * 61.87304 * 17 16 14 50 50 H 0.97006 * 120.00078 * 179.97438 * 22 21 19 51 51 H 1.08997 * 109.15997 * 187.27203 * 27 18 17 52 52 H 1.08997 * 109.11337 * 68.05644 * 27 18 17 53 53 H 1.09000 * 110.06132 * 61.30713 * 30 12 10 54 54 H 1.09000 * 110.05787 * 299.80266 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0407 0.6005 -1.1027 6 6 5.4885 1.1227 -1.2808 7 6 5.3378 2.6443 -1.0524 8 6 4.0389 2.8023 -0.2404 9 1 3.3168 3.3911 -0.8059 10 6 4.3342 3.4774 1.0742 11 8 4.1111 2.8989 2.1165 12 7 4.8464 4.7239 1.0916 13 6 5.1818 5.5015 2.3010 14 6 6.2765 6.5051 1.8262 15 1 6.3795 7.3753 2.4743 16 6 7.5738 5.7004 1.7157 17 6 8.6101 6.4531 0.8828 18 7 8.0214 6.7121 -0.4412 19 6 8.6198 6.2603 -1.5871 20 1 8.0212 6.0435 -2.4596 21 6 9.9957 6.0812 -1.6274 22 7 10.5298 5.2879 -2.5318 23 14 11.0892 6.9656 -0.3981 24 1 11.3497 6.0763 0.7622 25 1 12.3764 7.3220 -1.0474 26 1 10.4110 8.2017 0.0679 27 6 6.7678 7.4732 -0.4843 28 6 5.7321 6.8650 0.4305 29 1 4.9043 7.5649 0.5440 30 6 5.1649 5.5406 -0.0941 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 1.9564 -0.8899 38 1 3.4628 0.7504 -2.0146 39 1 4.0437 -0.4512 -0.8163 40 1 5.8512 0.9180 -2.2882 41 1 6.1512 0.6845 -0.5347 42 1 5.2527 3.1636 -2.0070 43 1 6.1867 3.0278 -0.4865 44 1 5.5769 4.8464 3.0774 45 1 4.3051 6.0380 2.6640 46 1 7.3618 4.7413 1.2430 47 1 7.9738 5.5271 2.7147 48 1 9.5087 5.8456 0.7749 49 1 8.8591 7.3973 1.3673 50 1 11.4914 5.1630 -2.5603 51 1 6.3859 7.4760 -1.5052 52 1 6.9623 8.4993 -0.1723 53 1 4.2612 5.7247 -0.6751 54 1 5.9083 5.0332 -0.7089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087985750.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:28 Heat of formation + Delta-G solvation = -19.252215 kcal Electronic energy + Delta-G solvation = -31563.240243 eV Core-core repulsion = 27727.617859 eV Total energy + Delta-G solvation = -3835.622384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.79359 -40.40747 -38.83293 -36.99018 -35.53012 -34.24591 -33.01060 -32.37940 -31.75484 -30.60729 -28.79109 -27.39340 -26.43631 -25.23250 -23.88034 -23.48556 -22.95533 -22.16846 -21.28248 -20.24520 -19.95628 -18.76974 -18.07127 -17.27245 -17.26730 -16.97158 -16.73423 -16.15451 -15.84614 -15.42686 -15.37378 -15.08082 -14.93956 -14.60889 -14.51902 -14.31523 -14.18334 -13.99484 -13.87203 -13.56740 -13.37169 -13.29099 -13.21326 -12.94277 -12.75176 -12.54288 -12.43517 -12.34549 -12.29331 -12.16851 -12.01662 -11.83431 -11.78717 -11.76362 -11.56653 -11.54043 -11.15176 -11.10971 -10.74999 -10.62335 -9.57959 -9.40618 -8.87529 -8.11800 -5.41244 1.32444 1.43016 1.51279 1.61839 1.92457 2.45933 2.94385 3.10134 3.34864 3.41141 3.54359 3.59707 3.67812 3.82091 3.86442 3.95593 4.07584 4.11929 4.18678 4.23265 4.38989 4.42694 4.44692 4.47486 4.53293 4.53425 4.63757 4.66805 4.69581 4.74450 4.75457 4.81578 4.85615 4.86223 4.94877 4.98814 5.00088 5.04992 5.06968 5.10904 5.14775 5.17125 5.21650 5.27735 5.28417 5.34047 5.38947 5.55149 5.79939 5.92789 6.04953 6.18829 6.54644 6.96486 7.21183 7.67806 8.12066 9.07739 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.003510 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.449287 B = 7974.449339 C = 8958.837945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.052 3.948 4 N -0.518 5.518 5 C 0.044 3.956 6 C -0.123 4.123 7 C -0.116 4.116 8 C 0.062 3.938 9 H 0.091 0.909 10 C 0.532 3.468 11 O -0.568 6.568 12 N -0.615 5.615 13 C 0.111 3.889 14 C -0.078 4.078 15 H 0.124 0.876 16 C -0.120 4.120 17 C 0.122 3.878 18 N -0.615 5.615 19 C -0.230 4.230 20 H 0.059 0.941 21 C -0.035 4.035 22 N -0.957 5.957 23 Si 0.938 3.062 24 H -0.287 1.287 25 H -0.317 1.317 26 H -0.254 1.254 27 C 0.155 3.845 28 C -0.102 4.102 29 H 0.108 0.892 30 C 0.109 3.891 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.067 0.933 48 H 0.040 0.960 49 H 0.043 0.957 50 H 0.258 0.742 51 H 0.063 0.937 52 H 0.044 0.956 53 H 0.083 0.917 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.825 -2.829 4.811 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.076 4.076 4 N -0.243 5.243 5 C -0.082 4.082 6 C -0.161 4.161 7 C -0.155 4.155 8 C -0.050 4.050 9 H 0.108 0.892 10 C 0.320 3.680 11 O -0.447 6.447 12 N -0.349 5.349 13 C -0.011 4.011 14 C -0.097 4.097 15 H 0.142 0.858 16 C -0.159 4.159 17 C -0.003 4.003 18 N -0.340 5.340 19 C -0.360 4.360 20 H 0.077 0.923 21 C -0.230 4.230 22 N -0.603 5.603 23 Si 0.769 3.231 24 H -0.214 1.214 25 H -0.247 1.247 26 H -0.178 1.178 27 C 0.030 3.970 28 C -0.123 4.123 29 H 0.126 0.874 30 C -0.014 4.014 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.057 0.943 47 H 0.085 0.915 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.067 0.933 51 H 0.081 0.919 52 H 0.062 0.938 53 H 0.102 0.898 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.727 -3.461 5.790 19.905 hybrid contribution 1.115 0.455 -0.391 1.266 sum -17.612 -3.006 5.399 18.665 Atomic orbital electron populations 1.21708 0.94249 1.02487 1.01998 1.21534 0.96673 0.94837 1.02512 1.22346 0.86119 0.98675 1.00421 1.64342 1.09060 1.06284 1.44578 1.23271 0.94080 0.98441 0.92449 1.22502 0.97209 0.93805 1.02600 1.22333 0.94947 0.98409 0.99762 1.22219 0.98517 0.91967 0.92335 0.89183 1.20507 0.76439 0.79621 0.91413 1.90630 1.54284 1.64294 1.35497 1.48667 1.62608 1.14423 1.09227 1.22568 0.98028 0.93076 0.87410 1.22343 0.92768 0.97740 0.96814 0.85808 1.21845 0.96254 0.98541 0.99237 1.21302 0.95373 0.97358 0.86246 1.44429 1.25381 1.63204 1.00959 1.18780 0.89788 1.35526 0.91889 0.92327 1.25819 0.98193 0.99935 0.99033 1.69960 1.11446 1.38999 1.39922 0.86003 0.77942 0.80654 0.78537 1.21430 1.24687 1.17837 1.20455 0.84666 0.93415 0.98479 1.21804 0.98889 0.96274 0.95286 0.87392 1.22104 0.99902 0.91684 0.87680 0.92081 0.91470 0.93020 0.90854 0.92397 0.92417 0.93649 0.91711 0.88797 0.89062 0.92242 0.89381 0.93110 0.92203 0.89778 0.94331 0.91457 0.94228 0.93931 0.93332 0.91853 0.93772 0.89848 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -2.08 5.59 30.59 0.17 -1.91 16 3 C 0.05 1.14 5.03 86.30 0.43 1.57 16 4 N -0.52 -13.62 4.53 -862.44 -3.91 -17.53 16 5 C 0.04 0.95 5.10 86.65 0.44 1.39 16 6 C -0.12 -3.08 7.06 31.80 0.22 -2.86 16 7 C -0.12 -3.28 4.98 31.47 0.16 -3.12 16 8 C 0.06 1.68 2.38 44.31 0.11 1.78 16 9 H 0.09 2.11 7.58 -2.39 -0.02 2.09 16 10 C 0.53 17.43 7.06 87.66 0.62 18.05 16 11 O -0.57 -22.69 16.72 -3.04 -0.05 -22.74 16 12 N -0.62 -17.89 2.80 -810.04 -2.27 -20.16 16 13 C 0.11 2.90 6.18 87.17 0.54 3.44 16 14 C -0.08 -1.96 3.72 -9.40 -0.03 -2.00 16 15 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 16 C -0.12 -3.96 4.97 30.54 0.15 -3.81 16 17 C 0.12 4.87 4.23 86.17 0.36 5.23 16 18 N -0.62 -26.16 2.64 -703.90 -1.86 -28.01 16 19 C -0.23 -12.15 10.08 84.03 0.85 -11.30 16 20 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 21 C -0.04 -2.00 5.26 84.86 0.45 -1.55 16 22 N -0.96 -58.79 13.97 21.65 0.30 -58.49 16 23 Si 0.94 45.70 24.47 68.60 1.68 47.38 16 24 H -0.29 -13.64 6.66 99.48 0.66 -12.97 16 25 H -0.32 -15.99 7.11 99.48 0.71 -15.28 16 26 H -0.25 -11.55 6.69 99.48 0.67 -10.89 16 27 C 0.15 4.96 5.85 85.68 0.50 5.46 16 28 C -0.10 -2.56 2.69 -10.98 -0.03 -2.59 16 29 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 30 C 0.11 2.92 5.08 86.31 0.44 3.36 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.07 1.14 6.79 -2.38 -0.02 1.12 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 0.86 7.82 -2.39 -0.02 0.84 16 38 H 0.06 1.15 8.00 -2.38 -0.02 1.13 16 39 H 0.09 1.83 7.66 -2.39 -0.02 1.82 16 40 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.05 1.78 6.78 -2.39 -0.02 1.76 16 44 H 0.06 1.76 7.87 -2.39 -0.02 1.74 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.04 1.49 7.13 -2.39 -0.02 1.48 16 47 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.04 1.83 4.33 -2.39 -0.01 1.82 16 49 H 0.04 1.59 7.43 -2.39 -0.02 1.57 16 50 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 51 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16 52 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 53 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 54 H 0.06 2.01 6.04 -2.39 -0.01 2.00 16 Total: -1.00 -70.30 396.49 0.75 -69.55 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.77 Total: 20.18 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 6.09 Total: 9.82 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -7.74 Total: -124.20 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.74 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.68 Total: 47.38 kcal Total: -70.30 0.75 -69.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087985750.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.301 kcal (2) G-P(sol) polarization free energy of solvation -70.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds