Wall clock time and date at job start Tue Mar 31 2020 19:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 110.00013 * 2 1 4 4 C 1.54340 * 109.99218 * 238.96387 * 2 1 3 5 5 H 1.08994 * 110.66644 * 337.04679 * 4 2 1 6 6 N 1.46497 * 110.84710 * 100.19906 * 4 2 1 7 7 C 1.34782 * 120.00034 * 200.14309 * 6 4 2 8 8 O 1.21282 * 119.99742 * 0.02562 * 7 6 4 9 9 C 1.50693 * 120.00393 * 179.97438 * 7 6 4 10 10 C 1.53123 * 109.52405 * 299.87942 * 9 7 6 11 11 C 1.53043 * 109.27574 * 182.50117 * 10 9 7 12 12 N 1.46845 * 109.57650 * 59.08310 * 11 10 9 13 13 C 1.46894 * 111.00185 * 174.19297 * 12 11 10 14 14 C 1.52997 * 109.47191 * 294.21001 * 13 12 11 15 15 C 1.53001 * 117.50122 * 243.62112 * 14 13 12 16 16 C 1.52998 * 60.00111 * 252.50923 * 15 14 13 17 17 C 1.46855 * 111.19652 * 298.28930 * 12 11 10 18 18 C 1.53041 * 109.51989 * 61.74310 * 17 12 11 19 19 C 1.55161 * 103.01876 * 218.66571 * 4 2 1 20 20 C 1.54908 * 101.58222 * 35.30967 * 19 4 2 21 21 N 1.47028 * 109.88395 * 121.09942 * 2 1 3 22 22 C 1.36934 * 125.64317 * 298.39681 * 21 2 1 23 23 H 1.07999 * 120.00506 * 342.82794 * 22 21 2 24 24 C 1.38815 * 119.99751 * 162.83346 * 22 21 2 25 25 N 1.31620 * 119.99613 * 332.20232 * 24 22 21 26 26 Si 1.86797 * 120.00242 * 151.93534 * 24 22 21 27 27 H 1.48495 * 109.47406 * 180.27281 * 26 24 22 28 28 H 1.48502 * 109.47007 * 300.27453 * 26 24 22 29 29 H 1.48498 * 109.47055 * 60.26991 * 26 24 22 30 30 H 1.08991 * 109.47383 * 300.35565 * 1 2 3 31 31 H 1.09000 * 109.46845 * 60.35836 * 1 2 3 32 32 H 1.09002 * 109.47195 * 180.35503 * 1 2 3 33 33 H 0.96997 * 120.00622 * 20.14919 * 6 4 2 34 34 H 1.09006 * 109.52450 * 59.99915 * 9 7 6 35 35 H 1.08997 * 109.50421 * 302.38146 * 10 9 7 36 36 H 1.09008 * 109.50369 * 62.49623 * 10 9 7 37 37 H 1.09000 * 109.41272 * 299.06712 * 11 10 9 38 38 H 1.09003 * 109.46325 * 179.13402 * 11 10 9 39 39 H 1.09005 * 109.47264 * 54.20840 * 13 12 11 40 40 H 1.09002 * 109.47179 * 174.21000 * 13 12 11 41 41 H 1.09004 * 115.54887 * 29.32923 * 14 13 12 42 42 H 1.09001 * 117.49764 * 359.97438 * 15 14 13 43 43 H 1.08996 * 117.50058 * 145.01496 * 15 14 13 44 44 H 1.09002 * 117.49682 * 252.50664 * 16 15 14 45 45 H 1.09000 * 117.49976 * 107.48706 * 16 15 14 46 46 H 1.08994 * 109.46165 * 301.72640 * 17 12 11 47 47 H 1.09003 * 109.45197 * 181.74683 * 17 12 11 48 48 H 1.09006 * 109.50047 * 180.87871 * 18 17 12 49 49 H 1.08994 * 109.53459 * 60.78180 * 18 17 12 50 50 H 1.09003 * 111.00109 * 277.23150 * 19 4 2 51 51 H 1.09002 * 111.03089 * 153.39575 * 19 4 2 52 52 H 1.08999 * 110.36408 * 204.15175 * 20 19 4 53 53 H 1.09000 * 110.46127 * 81.87240 * 20 19 4 54 54 H 0.96994 * 120.00759 * 353.70279 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 1.3067 -1.4405 -1.6225 6 7 2.4637 0.1969 -2.2862 7 6 2.5639 -0.2145 -3.5658 8 8 2.3175 -1.3667 -3.8534 9 6 2.9811 0.7573 -4.6393 10 6 1.9770 1.9116 -4.7029 11 6 2.3710 2.8621 -5.8358 12 7 2.3863 2.1306 -7.1089 13 6 2.6259 3.0412 -8.2364 14 6 1.4433 4.0018 -8.3764 15 6 0.6180 3.9237 -9.6624 16 6 1.5540 5.1105 -9.4250 17 6 3.3778 1.0476 -7.0872 18 6 3.0129 0.0420 -5.9928 19 6 3.2864 -1.5184 -0.6915 20 6 2.8099 -1.8826 0.7368 21 7 2.0300 -0.7142 1.1839 22 6 1.8037 -0.3565 2.4862 23 1 1.4631 0.6411 2.7209 24 6 2.0124 -1.2763 3.5048 25 7 1.8867 -2.5642 3.2643 26 14 2.4787 -0.6865 5.2148 27 1 2.6499 -1.8569 6.1125 28 1 3.7518 0.0748 5.1457 29 1 1.4051 0.1916 5.7454 30 1 -0.3634 0.5193 0.8867 31 1 -0.3633 0.5083 -0.8932 32 1 -0.3634 -1.0277 0.0064 33 1 2.6605 1.1184 -2.0564 34 1 3.9723 1.1490 -4.4109 35 1 0.9791 1.5159 -4.8916 36 1 1.9821 2.4509 -3.7556 37 1 3.3629 3.2690 -5.6388 38 1 1.6494 3.6770 -5.8937 39 1 3.5375 3.6110 -8.0559 40 1 2.7346 2.4627 -9.1539 41 1 0.9146 4.2344 -7.4520 42 1 0.9178 3.1882 -10.4089 43 1 -0.4540 4.1046 -9.5842 44 1 1.0977 6.0723 -9.1907 45 1 2.4694 5.1555 -10.0152 46 1 4.3649 1.4629 -6.8844 47 1 3.3871 0.5445 -8.0542 48 1 3.7576 -0.7535 -5.9666 49 1 2.0320 -0.3845 -6.2021 50 1 4.1670 -0.8768 -0.6579 51 1 3.4813 -2.4156 -1.2790 52 1 3.6655 -2.0413 1.3932 53 1 2.1805 -2.7723 0.7132 54 1 1.5603 -2.8672 2.4027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088969017.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:01 Heat of formation + Delta-G solvation = -15.125830 kcal Electronic energy + Delta-G solvation = -29668.102241 eV Core-core repulsion = 25832.658791 eV Total energy + Delta-G solvation = -3835.443450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.44381 -40.07621 -39.20865 -37.74847 -35.79350 -34.45006 -33.68475 -32.24954 -31.81956 -30.36834 -28.35341 -26.61367 -25.72616 -24.69599 -24.18779 -23.18056 -22.38348 -21.67545 -21.56094 -20.98962 -20.53071 -19.30097 -18.22520 -17.63685 -17.14828 -16.44347 -16.18273 -16.07824 -15.97012 -15.64667 -15.36338 -15.28420 -15.12285 -14.89817 -14.73470 -14.46042 -14.14192 -13.96513 -13.63351 -13.48789 -13.44057 -13.06180 -13.00392 -12.59946 -12.53963 -12.46676 -12.31505 -12.23963 -12.19533 -12.12877 -12.08984 -11.88994 -11.71873 -11.68631 -11.53184 -11.35865 -11.13066 -10.83774 -10.73151 -10.49895 -10.07310 -9.20411 -9.03161 -8.29540 -5.31960 1.58598 1.62590 1.66789 1.85100 2.09796 2.66685 2.75435 3.11687 3.20722 3.39908 3.60720 3.69471 3.73173 3.75579 3.84029 3.89894 4.06036 4.09153 4.17302 4.25044 4.27846 4.31777 4.41722 4.43756 4.45430 4.49315 4.51566 4.63132 4.68381 4.69591 4.76819 4.79919 4.81718 4.83538 4.90472 4.92797 4.97853 5.01105 5.05516 5.08054 5.11542 5.20109 5.20661 5.29471 5.29941 5.36747 5.37674 5.54492 5.71448 6.17047 6.18417 6.31836 6.55757 6.89668 7.25599 7.71179 8.29536 9.02121 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.002052 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.410739 B =13644.207101 C =14195.454000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.151 3.849 3 H 0.057 0.943 4 C 0.154 3.846 5 H 0.074 0.926 6 N -0.704 5.704 7 C 0.517 3.483 8 O -0.583 6.583 9 C -0.097 4.097 10 C -0.103 4.103 11 C 0.059 3.941 12 N -0.550 5.550 13 C 0.090 3.910 14 C -0.156 4.156 15 C -0.182 4.182 16 C -0.175 4.175 17 C 0.064 3.936 18 C -0.092 4.092 19 C -0.128 4.128 20 C 0.150 3.850 21 N -0.613 5.613 22 C -0.333 4.333 23 H 0.066 0.934 24 C -0.084 4.084 25 N -0.948 5.948 26 Si 1.116 2.884 27 H -0.296 1.296 28 H -0.280 1.280 29 H -0.274 1.274 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.414 0.586 34 H 0.116 0.884 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.046 0.954 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.056 0.944 50 H 0.080 0.920 51 H 0.070 0.930 52 H 0.025 0.975 53 H 0.001 0.999 54 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.431 16.870 -25.892 31.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.045 3.955 3 H 0.074 0.926 4 C 0.048 3.952 5 H 0.092 0.908 6 N -0.355 5.355 7 C 0.305 3.695 8 O -0.463 6.463 9 C -0.118 4.118 10 C -0.141 4.141 11 C -0.069 4.069 12 N -0.275 5.275 13 C -0.037 4.037 14 C -0.174 4.174 15 C -0.219 4.219 16 C -0.212 4.212 17 C -0.064 4.064 18 C -0.131 4.131 19 C -0.168 4.168 20 C 0.024 3.976 21 N -0.339 5.339 22 C -0.461 4.461 23 H 0.084 0.916 24 C -0.279 4.279 25 N -0.591 5.591 26 Si 0.941 3.059 27 H -0.223 1.223 28 H -0.206 1.206 29 H -0.199 1.199 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.251 0.749 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.064 0.936 47 H 0.101 0.899 48 H 0.085 0.915 49 H 0.074 0.926 50 H 0.098 0.902 51 H 0.089 0.911 52 H 0.043 0.957 53 H 0.019 0.981 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.215 15.403 -24.550 29.160 hybrid contribution -0.023 0.445 -0.907 1.011 sum 3.193 15.848 -25.457 30.157 Atomic orbital electron populations 1.22083 0.96985 1.00226 1.01038 1.21241 0.93050 0.95465 0.85746 0.92578 1.21619 0.95726 0.91032 0.86866 0.90806 1.45875 1.69070 1.14137 1.06442 1.21254 0.75827 0.88873 0.83512 1.90686 1.51318 1.21585 1.82698 1.21402 1.02178 0.95232 0.93024 1.21584 0.98084 0.94789 0.99676 1.22113 1.01034 0.95733 0.88000 1.61846 1.50021 1.12266 1.03404 1.21625 0.95324 0.92925 0.93827 1.22306 1.00319 1.00334 0.94463 1.23044 0.97870 1.01448 0.99506 1.23034 1.02005 0.93790 1.02417 1.22039 0.93090 0.92104 0.99179 1.21328 1.02355 0.97261 0.92117 1.23040 0.98195 1.00477 0.95063 1.21363 0.93293 0.89802 0.93170 1.44831 1.58194 1.29556 1.01340 1.19937 1.46321 0.97174 0.82676 0.91610 1.27141 1.00487 0.93688 1.06597 1.70892 1.47333 1.15858 1.25052 0.82840 0.77106 0.74579 0.71420 1.22255 1.20583 1.19935 0.93872 0.90835 0.95331 0.74897 0.86609 0.92108 0.89110 0.93554 0.89408 0.93901 0.90504 0.87802 0.88707 0.88973 0.88261 0.88218 0.93630 0.89903 0.91457 0.92553 0.90178 0.91108 0.95660 0.98147 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 9.14 71.98 0.66 -4.77 16 2 C 0.15 5.89 3.48 45.34 0.16 6.04 16 3 H 0.06 2.01 7.69 -2.39 -0.02 1.99 16 4 C 0.15 5.34 2.76 46.19 0.13 5.47 16 5 H 0.07 2.89 7.40 -2.39 -0.02 2.87 16 6 N -0.70 -18.15 5.11 -436.90 -2.23 -20.39 16 7 C 0.52 13.80 7.16 87.65 0.63 14.42 16 8 O -0.58 -21.01 15.70 -3.03 -0.05 -21.06 16 9 C -0.10 -1.74 2.59 -11.46 -0.03 -1.77 16 10 C -0.10 -1.53 5.26 30.65 0.16 -1.37 16 11 C 0.06 0.73 5.30 86.33 0.46 1.19 16 12 N -0.55 -7.87 4.66 -896.34 -4.18 -12.04 16 13 C 0.09 1.05 5.24 86.30 0.45 1.51 16 14 C -0.16 -1.80 5.67 -10.79 -0.06 -1.86 16 15 C -0.18 -2.03 10.18 30.59 0.31 -1.72 16 16 C -0.18 -1.64 10.25 30.59 0.31 -1.33 16 17 C 0.06 0.90 5.46 86.33 0.47 1.37 16 18 C -0.09 -1.77 4.68 30.65 0.14 -1.62 16 19 C -0.13 -4.85 6.77 31.99 0.22 -4.64 16 20 C 0.15 7.27 5.30 86.86 0.46 7.73 16 21 N -0.61 -30.54 3.02 -668.24 -2.02 -32.56 16 22 C -0.33 -18.43 9.62 84.03 0.81 -17.62 16 23 H 0.07 3.57 7.97 -2.91 -0.02 3.55 16 24 C -0.08 -4.80 5.09 84.86 0.43 -4.37 16 25 N -0.95 -59.17 12.92 21.65 0.28 -58.89 16 26 Si 1.12 51.13 30.00 68.60 2.06 53.19 16 27 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 28 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 29 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 30 H 0.04 1.72 8.02 -2.39 -0.02 1.70 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.41 8.13 7.80 -92.71 -0.72 7.40 16 34 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.04 7.65 -2.38 -0.02 1.02 16 37 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.09 0.99 6.16 -2.39 -0.01 0.98 16 39 H 0.04 0.45 8.12 -2.38 -0.02 0.44 16 40 H 0.08 0.87 7.72 -2.39 -0.02 0.85 16 41 H 0.10 1.30 6.33 -2.39 -0.02 1.28 16 42 H 0.09 1.01 8.03 -2.39 -0.02 1.00 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.08 1.09 8.02 -2.39 -0.02 1.07 16 48 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 49 H 0.06 1.35 8.04 -2.39 -0.02 1.34 16 50 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 51 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 52 H 0.02 1.34 7.95 -2.39 -0.02 1.32 16 53 H 0.00 0.04 6.80 -2.39 -0.02 0.02 16 54 H 0.25 16.18 6.05 -92.71 -0.56 15.62 16 Total: -1.00 -71.58 414.13 -0.08 -71.67 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.35 Total: 23.40 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 5.71 Total: -3.32 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -8.15 Total: -123.88 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.05 Total: -21.06 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.06 Total: 53.19 kcal Total: -71.58 -0.08 -71.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088969017.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.541 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds