Wall clock time and date at job start Tue Mar 31 2020 19:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46953 * 2 1 4 4 N 1.46900 * 109.47330 * 119.99656 * 2 1 3 5 5 C 1.48531 * 110.99754 * 57.60295 * 4 2 1 6 6 C 1.54937 * 103.22941 * 159.72266 * 5 4 2 7 7 C 1.54598 * 102.91960 * 322.58937 * 6 5 4 8 8 C 1.47893 * 111.00314 * 175.00040 * 4 2 1 9 9 H 1.08998 * 110.08006 * 333.60257 * 8 4 2 10 10 C 1.50706 * 109.91914 * 94.80390 * 8 4 2 11 11 O 1.21283 * 119.99503 * 359.04515 * 10 8 4 12 12 N 1.34773 * 120.00081 * 178.77242 * 10 8 4 13 13 C 1.47210 * 126.70121 * 0.02562 * 12 10 8 14 14 C 1.53790 * 106.37352 * 211.27510 * 13 12 10 15 15 H 1.09003 * 111.85822 * 104.04711 * 14 13 12 16 16 C 1.53786 * 109.34362 * 228.51379 * 14 13 12 17 17 N 1.47221 * 106.37117 * 93.95593 * 16 14 13 18 18 C 1.36937 * 126.69713 * 211.29257 * 17 16 14 19 19 H 1.08005 * 119.99652 * 179.97438 * 18 17 16 20 20 C 1.38809 * 120.00687 * 359.97438 * 18 17 16 21 21 N 1.31627 * 119.99448 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00325 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47032 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47109 * 120.00192 * 22 20 18 25 25 H 1.48498 * 109.47241 * 240.00213 * 22 20 18 26 26 C 1.47213 * 106.59732 * 31.27685 * 17 16 14 27 27 C 1.53782 * 106.37434 * 328.72580 * 26 17 16 28 28 C 1.52994 * 111.86219 * 140.61194 * 27 26 17 29 29 C 1.47219 * 126.70033 * 179.71653 * 12 10 8 30 30 H 1.09003 * 109.47523 * 300.00025 * 1 2 3 31 31 H 1.08996 * 109.47317 * 59.99965 * 1 2 3 32 32 H 1.08997 * 109.47193 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47128 * 240.00104 * 2 1 3 34 34 H 1.08996 * 109.47353 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47138 * 300.00145 * 3 2 1 36 36 H 1.09003 * 109.47027 * 59.99671 * 3 2 1 37 37 H 1.08999 * 110.66740 * 41.28661 * 5 4 2 38 38 H 1.09001 * 110.81527 * 278.22690 * 5 4 2 39 39 H 1.08996 * 110.73221 * 204.23394 * 6 5 4 40 40 H 1.08997 * 110.87993 * 81.01214 * 6 5 4 41 41 H 1.09004 * 110.30985 * 263.04196 * 7 6 5 42 42 H 1.08993 * 110.39782 * 140.91329 * 7 6 5 43 43 H 1.08999 * 110.07734 * 330.50354 * 13 12 10 44 44 H 1.09000 * 110.07176 * 91.99579 * 13 12 10 45 45 H 1.08996 * 110.07321 * 213.18223 * 16 14 13 46 46 H 1.08997 * 110.07439 * 334.67748 * 16 14 13 47 47 H 0.97003 * 119.99529 * 179.97438 * 21 20 18 48 48 H 1.09001 * 110.07701 * 87.94892 * 26 17 16 49 49 H 1.08991 * 110.07489 * 209.49308 * 26 17 16 50 50 H 1.09000 * 109.46944 * 302.05852 * 28 27 26 51 51 H 1.09000 * 109.47399 * 62.05465 * 28 27 26 52 52 H 1.08997 * 109.47489 * 182.05319 * 28 27 26 53 53 H 1.09002 * 110.06917 * 267.95430 * 29 12 10 54 54 H 1.09001 * 110.07159 * 29.49090 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4967 -2.0811 1.2632 6 6 2.4843 -2.7882 2.2250 7 6 3.8444 -2.1561 1.8499 8 6 3.4932 -0.8172 1.1750 9 1 3.8519 -0.8148 0.1458 10 6 4.1177 0.3220 1.9387 11 8 3.4143 1.1719 2.4427 12 7 5.4575 0.3934 2.0664 13 6 6.4447 -0.5538 1.5232 14 6 7.6291 -0.5557 2.5042 15 1 7.6374 -1.4491 3.1287 16 6 8.9414 -0.3941 1.7188 17 7 9.2466 1.0462 1.7127 18 6 9.8968 1.7407 0.7278 19 1 10.0636 2.8023 0.8358 20 6 10.3415 1.0805 -0.4094 21 7 10.1377 -0.2132 -0.5412 22 14 11.2278 2.0281 -1.7531 23 1 11.3289 3.4583 -1.3660 24 1 12.5908 1.4681 -1.9372 25 1 10.4689 1.9114 -3.0242 26 6 8.7159 1.5938 2.9719 27 6 7.4813 0.7481 3.3262 28 6 7.3927 0.4707 4.8282 29 6 6.2198 1.4374 2.7710 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 1.5197 -2.5465 0.2778 38 1 0.4858 -2.0960 1.6706 39 1 2.4958 -3.8631 2.0446 40 1 2.2338 -2.5756 3.2643 41 1 4.3822 -2.8006 1.1545 42 1 4.4426 -1.9833 2.7445 43 1 6.0103 -1.5515 1.4592 44 1 6.7748 -0.2259 0.5375 45 1 9.7427 -0.9443 2.2119 46 1 8.8133 -0.7545 0.6981 47 1 10.4481 -0.6745 -1.3361 48 1 9.4642 1.5119 3.7603 49 1 8.4287 2.6362 2.8349 50 1 8.2983 -0.0388 5.1576 51 1 7.2899 1.4130 5.3663 52 1 6.5270 -0.1597 5.0309 53 1 6.4980 2.2303 2.0767 54 1 5.6262 1.8466 3.5885 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091664465.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:35 Heat of formation + Delta-G solvation = -12.145778 kcal Electronic energy + Delta-G solvation = -31777.747156 eV Core-core repulsion = 27942.432931 eV Total energy + Delta-G solvation = -3835.314225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.86085 -40.58666 -38.77696 -36.54854 -35.52911 -34.45288 -32.55238 -31.62479 -30.84075 -30.25624 -28.09001 -27.73504 -27.17058 -26.64875 -24.50848 -23.41268 -22.10821 -21.78564 -21.28102 -20.37206 -19.92854 -18.69811 -17.81496 -17.49817 -17.21675 -16.79758 -16.39982 -15.80197 -15.66662 -15.43447 -15.41906 -14.97792 -14.64477 -14.46975 -14.26749 -14.12586 -13.84143 -13.69995 -13.56452 -13.36538 -13.28532 -13.16232 -12.97435 -12.90703 -12.77482 -12.51105 -12.45728 -12.37766 -12.20106 -12.12757 -11.95602 -11.89202 -11.83096 -11.77625 -11.65666 -11.49599 -11.34943 -11.24013 -10.81637 -10.63180 -9.63307 -9.39485 -8.87901 -7.74079 -5.20042 1.46660 1.47738 1.56847 1.66764 1.92045 2.49496 2.94954 3.31689 3.36742 3.57562 3.60070 3.65433 3.76790 3.83360 3.96463 4.01845 4.03276 4.13690 4.26128 4.27665 4.30990 4.37132 4.38713 4.54842 4.60817 4.66333 4.71664 4.74856 4.80516 4.80655 4.84407 4.86883 4.87930 4.91305 4.95835 5.02177 5.02830 5.05809 5.10059 5.17352 5.21885 5.26685 5.29799 5.31218 5.36995 5.43474 5.52231 5.60044 5.84771 5.86455 6.11223 6.40069 6.63307 7.13691 7.24598 7.79175 8.46262 9.24870 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.003601 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.350211 B = 7772.880661 C = 8513.898556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.070 3.930 3 C -0.132 4.132 4 N -0.509 5.509 5 C 0.037 3.963 6 C -0.115 4.115 7 C -0.123 4.123 8 C 0.056 3.944 9 H 0.072 0.928 10 C 0.536 3.464 11 O -0.559 6.559 12 N -0.615 5.615 13 C 0.119 3.881 14 C -0.104 4.104 15 H 0.106 0.894 16 C 0.145 3.855 17 N -0.616 5.616 18 C -0.231 4.231 19 H 0.076 0.924 20 C -0.060 4.060 21 N -0.941 5.941 22 Si 0.973 3.027 23 H -0.272 1.272 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.140 3.860 27 C -0.075 4.075 28 C -0.115 4.115 29 C 0.131 3.869 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.021 0.979 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.044 0.956 45 H -0.012 1.012 46 H 0.100 0.900 47 H 0.248 0.752 48 H 0.027 0.973 49 H 0.039 0.961 50 H 0.066 0.934 51 H 0.065 0.935 52 H 0.062 0.938 53 H 0.041 0.959 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.843 -7.372 4.712 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.039 4.039 3 C -0.190 4.190 4 N -0.234 5.234 5 C -0.090 4.090 6 C -0.153 4.153 7 C -0.161 4.161 8 C -0.056 4.056 9 H 0.090 0.910 10 C 0.325 3.675 11 O -0.436 6.436 12 N -0.348 5.348 13 C -0.004 4.004 14 C -0.124 4.124 15 H 0.124 0.876 16 C 0.019 3.981 17 N -0.340 5.340 18 C -0.360 4.360 19 H 0.094 0.906 20 C -0.252 4.252 21 N -0.592 5.592 22 Si 0.802 3.198 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.220 1.220 26 C 0.014 3.986 27 C -0.078 4.078 28 C -0.173 4.173 29 C 0.008 3.992 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.062 0.938 45 H 0.006 0.994 46 H 0.118 0.882 47 H 0.058 0.942 48 H 0.045 0.955 49 H 0.058 0.942 50 H 0.085 0.915 51 H 0.084 0.916 52 H 0.081 0.919 53 H 0.060 0.940 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.408 -6.590 5.185 19.322 hybrid contribution 1.443 0.541 -1.640 2.251 sum -15.964 -6.049 3.545 17.436 Atomic orbital electron populations 1.21784 0.92196 1.02833 1.02418 1.21858 0.97308 0.94425 0.90270 1.21767 0.99010 0.96505 1.01673 1.64390 1.03172 1.16928 1.38927 1.23330 0.99935 0.86375 0.99348 1.22491 0.92425 1.00600 0.99757 1.22502 0.99480 0.92973 1.01166 1.22222 0.90638 0.94158 0.98559 0.90997 1.20544 0.79708 0.86956 0.80306 1.90631 1.61098 1.42328 1.49581 1.48632 1.04911 1.27055 1.54223 1.22209 0.88147 0.93651 0.96400 1.22917 0.95442 0.97813 0.96255 0.87583 1.21790 0.90752 0.84391 1.01143 1.44735 1.66230 1.05548 1.17483 1.19416 1.27988 0.92358 0.96237 0.90595 1.25441 1.02649 0.96816 1.00327 1.69822 1.52545 1.08136 1.28652 0.85088 0.77604 0.78029 0.79094 1.19711 1.21864 1.21981 1.21563 0.93024 0.95847 0.88190 1.22125 0.93668 0.95153 0.96813 1.21586 1.02254 1.02158 0.91282 1.21957 0.91500 0.90236 0.95531 0.92721 0.91000 0.91104 0.93672 0.95992 0.91298 0.93011 0.92301 0.88651 0.88060 0.91199 0.88547 0.90985 0.88279 0.93777 0.99395 0.88203 0.94207 0.95481 0.94230 0.91538 0.91573 0.91858 0.94021 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.99 71.98 0.65 -1.71 16 2 C 0.07 1.58 2.38 44.92 0.11 1.69 16 3 C -0.13 -3.64 7.93 71.98 0.57 -3.07 16 4 N -0.51 -12.41 4.33 -837.41 -3.63 -16.03 16 5 C 0.04 0.63 5.31 86.65 0.46 1.09 16 6 C -0.11 -1.82 7.06 31.80 0.22 -1.59 16 7 C -0.12 -2.45 4.70 31.47 0.15 -2.30 16 8 C 0.06 1.48 1.89 44.32 0.08 1.56 16 9 H 0.07 1.92 7.66 -2.39 -0.02 1.90 16 10 C 0.54 17.97 5.68 87.66 0.50 18.46 16 11 O -0.56 -22.18 14.74 -3.04 -0.04 -22.23 16 12 N -0.61 -20.71 3.26 -814.47 -2.65 -23.36 16 13 C 0.12 3.91 6.04 86.51 0.52 4.43 16 14 C -0.10 -3.57 3.66 -9.63 -0.04 -3.60 16 15 H 0.11 3.08 7.92 -2.39 -0.02 3.06 16 16 C 0.14 6.63 5.56 86.51 0.48 7.11 16 17 N -0.62 -30.47 3.39 -695.33 -2.36 -32.83 16 18 C -0.23 -12.63 10.34 84.03 0.87 -11.76 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 20 C -0.06 -3.27 5.49 84.86 0.47 -2.80 16 21 N -0.94 -53.22 10.08 21.65 0.22 -53.00 16 22 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 C 0.14 5.62 6.19 86.51 0.54 6.15 16 27 C -0.08 -2.50 1.10 -50.92 -0.06 -2.56 16 28 C -0.12 -2.97 8.53 71.98 0.61 -2.36 16 29 C 0.13 4.61 6.15 86.62 0.53 5.14 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 0.99 6.88 -2.39 -0.02 0.98 16 33 H 0.05 0.97 7.96 -2.39 -0.02 0.95 16 34 H 0.02 0.70 6.22 -2.39 -0.01 0.68 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.64 7.55 -2.39 -0.02 1.62 16 37 H 0.06 0.86 8.02 -2.39 -0.02 0.84 16 38 H 0.10 1.43 7.66 -2.39 -0.02 1.41 16 39 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.10 1.59 7.77 -2.39 -0.02 1.57 16 42 H 0.07 1.57 7.11 -2.39 -0.02 1.55 16 43 H 0.10 2.62 5.20 -2.39 -0.01 2.61 16 44 H 0.04 1.79 7.40 -2.39 -0.02 1.77 16 45 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 46 H 0.10 5.17 4.81 -2.39 -0.01 5.16 16 47 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 48 H 0.03 1.07 7.87 -2.39 -0.02 1.05 16 49 H 0.04 1.60 7.51 -2.39 -0.02 1.58 16 50 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.04 1.68 7.41 -2.39 -0.02 1.66 16 54 H 0.07 2.53 7.64 -2.39 -0.02 2.51 16 Total: -1.00 -66.87 395.69 1.09 -65.78 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.86 Total: 20.89 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 6.67 Total: 13.87 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -8.42 Total: -125.23 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.04 Total: -22.23 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -66.87 1.09 -65.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091664465.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.633 kcal (2) G-P(sol) polarization free energy of solvation -66.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds