Wall clock time and date at job start Tue Mar 31 2020 19:08:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52999 * 109.47095 * 2 1
4 4 H 1.08999 * 109.90930 * 306.03474 * 3 2 1
5 5 C 1.53992 * 109.91910 * 184.92544 * 3 2 1
6 6 H 1.09004 * 110.31044 * 358.44493 * 5 3 2
7 7 C 1.50702 * 110.30716 * 120.50387 * 5 3 2
8 8 O 1.21281 * 120.00205 * 0.02562 * 7 5 3
9 9 N 1.34773 * 120.00121 * 180.02562 * 7 5 3
10 10 C 1.49983 * 127.21472 * 359.43032 * 9 7 5
11 11 C 1.54316 * 103.81420 * 219.16685 * 10 9 7
12 12 H 1.09000 * 112.07536 * 99.66345 * 11 10 9
13 13 C 1.53758 * 109.07777 * 224.36192 * 11 10 9
14 14 N 1.47205 * 106.45657 * 94.26487 * 13 11 10
15 15 C 1.36934 * 126.70290 * 211.35605 * 14 13 11
16 16 H 1.07997 * 119.99976 * 180.02562 * 15 14 13
17 17 C 1.38816 * 120.00150 * 0.02562 * 15 14 13
18 18 N 1.31615 * 119.99625 * 0.02562 * 17 15 14
19 19 Si 1.86793 * 119.99870 * 179.97438 * 17 15 14
20 20 H 1.48504 * 109.47076 * 60.00255 * 19 17 15
21 21 H 1.48502 * 109.46946 * 179.97438 * 19 17 15
22 22 H 1.48499 * 109.47532 * 300.00133 * 19 17 15
23 23 C 1.47338 * 106.52434 * 31.33406 * 14 13 11
24 24 C 1.53760 * 106.42136 * 328.67608 * 23 14 13
25 25 C 1.53001 * 112.07043 * 141.00073 * 24 23 14
26 26 C 1.48115 * 127.84566 * 180.02562 * 9 7 5
27 27 C 1.54584 * 105.14507 * 239.42444 * 5 3 2
28 28 C 1.54944 * 102.92244 * 338.04357 * 27 5 3
29 29 N 1.47902 * 109.91639 * 67.34036 * 3 2 1
30 30 C 1.46905 * 110.99858 * 265.19735 * 29 3 2
31 31 H 1.09006 * 109.46628 * 172.83401 * 1 2 3
32 32 H 1.09002 * 109.46793 * 292.83058 * 1 2 3
33 33 H 1.08998 * 109.47049 * 52.83514 * 1 2 3
34 34 H 1.09001 * 109.47006 * 240.00322 * 2 1 3
35 35 H 1.09003 * 109.46972 * 120.00386 * 2 1 3
36 36 H 1.09004 * 110.28765 * 100.91426 * 10 9 7
37 37 H 1.08993 * 111.35355 * 337.94327 * 10 9 7
38 38 H 1.09004 * 110.06855 * 213.52990 * 13 11 10
39 39 H 1.09004 * 110.07027 * 334.99694 * 13 11 10
40 40 H 0.97000 * 119.99608 * 180.02562 * 18 17 15
41 41 H 1.08992 * 110.05968 * 209.43780 * 23 14 13
42 42 H 1.09006 * 110.11111 * 87.93891 * 23 14 13
43 43 H 1.09001 * 109.47211 * 301.83284 * 25 24 23
44 44 H 1.08997 * 109.46827 * 61.82455 * 25 24 23
45 45 H 1.09001 * 109.47335 * 181.82700 * 25 24 23
46 46 H 1.08997 * 110.38778 * 21.43840 * 26 9 7
47 47 H 1.08998 * 110.48360 * 259.09885 * 26 9 7
48 48 H 1.09000 * 110.72751 * 96.39871 * 27 5 3
49 49 H 1.08996 * 110.72931 * 219.68633 * 27 5 3
50 50 H 1.09001 * 110.66727 * 278.97956 * 28 27 5
51 51 H 1.08999 * 110.81062 * 155.91467 * 28 27 5
52 52 H 1.09000 * 109.47038 * 65.78155 * 30 29 3
53 53 H 1.09004 * 109.46749 * 185.78578 * 30 29 3
54 54 H 1.08996 * 109.47219 * 305.78084 * 30 29 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5953 1.9934 -0.8287
5 6 3.5749 1.4563 -0.1243
6 1 3.9610 0.4375 -0.1571
7 6 3.9928 2.2130 -1.3588
8 8 3.1526 2.7029 -2.0833
9 7 5.3003 2.3452 -1.6577
10 6 6.4673 1.8194 -0.8759
11 6 7.5144 2.9488 -0.9725
12 1 7.5312 3.5696 -0.0767
13 6 8.8907 2.3336 -1.2749
14 7 9.0551 2.3779 -2.7371
15 6 9.7503 1.4865 -3.5099
16 1 9.8011 1.6242 -4.5798
17 6 10.3898 0.4059 -2.9180
18 7 10.3274 0.2379 -1.6141
19 14 11.3375 -0.8104 -3.9723
20 1 12.4252 -0.0997 -4.6914
21 1 11.9238 -1.8646 -3.1061
22 1 10.4176 -1.4336 -4.9575
23 6 8.3245 3.5688 -3.2051
24 6 7.1425 3.7604 -2.2406
25 6 6.8890 5.2366 -1.9280
26 6 5.9013 3.0466 -2.8156
27 6 4.0764 2.1819 1.1452
28 6 2.8390 3.0035 1.5863
29 7 1.7029 2.0961 1.2832
30 6 0.4440 2.8459 1.1773
31 1 -0.3633 -1.0197 -0.1282
32 1 -0.3633 0.3988 0.9472
33 1 -0.3633 0.6208 -0.8189
34 1 1.8934 -0.5138 -0.8900
35 1 1.8934 -0.5139 0.8900
36 1 6.8492 0.9072 -1.3343
37 1 6.1986 1.6387 0.1648
38 1 9.6752 2.9167 -0.7925
39 1 8.9239 1.3015 -0.9259
40 1 10.7746 -0.5170 -1.2005
41 1 7.9578 3.4080 -4.2188
42 1 8.9754 4.4427 -3.1772
43 1 7.7882 5.6762 -1.4964
44 1 6.6321 5.7636 -2.8469
45 1 6.0662 5.3216 -1.2182
46 1 5.2003 3.7743 -3.2244
47 1 6.1965 2.3316 -3.5835
48 1 4.3564 1.4630 1.9152
49 1 4.9121 2.8403 0.9086
50 1 2.7617 3.9236 1.0069
51 1 2.8810 3.2245 2.6529
52 1 -0.3795 2.1515 1.0111
53 1 0.2721 3.3993 2.1006
54 1 0.5056 3.5432 0.3419
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001091685022.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:08:08
Heat of formation + Delta-G solvation = -14.636776 kcal
Electronic energy + Delta-G solvation = -31496.265816 eV
Core-core repulsion = 27660.843573 eV
Total energy + Delta-G solvation = -3835.422243 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-41.86627 -40.61652 -38.90745 -36.49450 -34.65859 -34.11968 -33.37309 -32.36437
-31.56369 -29.16927 -28.12907 -27.65982 -26.79828 -26.27053 -24.41285 -23.57781
-22.67147 -21.84341 -21.26423 -20.30888 -19.84717 -18.68590 -17.76752 -17.34382
-17.02275 -16.71067 -16.30897 -16.16002 -15.81662 -15.62671 -15.43087 -14.92485
-14.58129 -14.40642 -14.26619 -14.16858 -13.96042 -13.85559 -13.58696 -13.41008
-13.23499 -13.16896 -13.08969 -12.97467 -12.70987 -12.55757 -12.44804 -12.38298
-12.34261 -12.14203 -11.93599 -11.82143 -11.77220 -11.64109 -11.47717 -11.42687
-11.38400 -11.25052 -10.87403 -10.68072 -9.78585 -9.45366 -8.87107 -7.72245
-5.18556 1.49597 1.50539 1.52794 1.56889 1.86083 2.51203 2.98116
3.31338 3.35939 3.46081 3.56779 3.63402 3.72975 3.78053 3.98364
4.10372 4.13939 4.25592 4.29744 4.32421 4.36564 4.40931 4.42506
4.54738 4.55020 4.57055 4.64915 4.69219 4.73728 4.78914 4.80793
4.82930 4.89003 4.94554 4.94929 4.98910 5.02990 5.10042 5.10896
5.14234 5.14871 5.24518 5.26997 5.31655 5.42205 5.46353 5.52786
5.59511 5.86444 5.86738 6.05771 6.41479 6.52588 7.05300 7.15038
7.80261 8.47514 9.26076
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.016010 B = 0.003235 C = 0.002983
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1748.457989 B = 8653.624016 C = 9383.258648
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.105 4.105
3 C 0.075 3.925
4 H 0.053 0.947
5 C -0.113 4.113
6 H 0.114 0.886
7 C 0.535 3.465
8 O -0.588 6.588
9 N -0.615 5.615
10 C 0.120 3.880
11 C -0.106 4.106
12 H 0.103 0.897
13 C 0.144 3.856
14 N -0.615 5.615
15 C -0.233 4.233
16 H 0.076 0.924
17 C -0.059 4.059
18 N -0.940 5.940
19 Si 0.973 3.027
20 H -0.283 1.283
21 H -0.292 1.292
22 H -0.282 1.282
23 C 0.140 3.860
24 C -0.077 4.077
25 C -0.115 4.115
26 C 0.128 3.872
27 C -0.110 4.110
28 C 0.035 3.965
29 N -0.511 5.511
30 C 0.010 3.990
31 H 0.062 0.938
32 H 0.067 0.933
33 H 0.042 0.958
34 H 0.056 0.944
35 H 0.078 0.922
36 H 0.056 0.944
37 H 0.107 0.893
38 H -0.014 1.014
39 H 0.103 0.897
40 H 0.248 0.752
41 H 0.041 0.959
42 H 0.025 0.975
43 H 0.065 0.935
44 H 0.064 0.936
45 H 0.059 0.941
46 H 0.075 0.925
47 H 0.052 0.948
48 H 0.106 0.894
49 H 0.079 0.921
50 H 0.030 0.970
51 H 0.105 0.895
52 H 0.082 0.918
53 H 0.082 0.918
54 H 0.013 0.987
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.162 4.741 8.740 18.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.143 4.143
3 C -0.034 4.034
4 H 0.071 0.929
5 C -0.135 4.135
6 H 0.132 0.868
7 C 0.325 3.675
8 O -0.469 6.469
9 N -0.346 5.346
10 C -0.001 4.001
11 C -0.127 4.127
12 H 0.121 0.879
13 C 0.018 3.982
14 N -0.339 5.339
15 C -0.362 4.362
16 H 0.094 0.906
17 C -0.252 4.252
18 N -0.590 5.590
19 Si 0.803 3.197
20 H -0.209 1.209
21 H -0.218 1.218
22 H -0.208 1.208
23 C 0.013 3.987
24 C -0.079 4.079
25 C -0.172 4.172
26 C 0.005 3.995
27 C -0.148 4.148
28 C -0.093 4.093
29 N -0.235 5.235
30 C -0.138 4.138
31 H 0.081 0.919
32 H 0.086 0.914
33 H 0.061 0.939
34 H 0.075 0.925
35 H 0.096 0.904
36 H 0.074 0.926
37 H 0.125 0.875
38 H 0.004 0.996
39 H 0.120 0.880
40 H 0.059 0.941
41 H 0.060 0.940
42 H 0.043 0.957
43 H 0.084 0.916
44 H 0.083 0.917
45 H 0.078 0.922
46 H 0.093 0.907
47 H 0.070 0.930
48 H 0.125 0.875
49 H 0.098 0.902
50 H 0.049 0.951
51 H 0.123 0.877
52 H 0.101 0.899
53 H 0.101 0.899
54 H 0.032 0.968
Dipole moment (debyes) X Y Z Total
from point charges -16.656 4.392 8.777 19.332
hybrid contribution 1.064 -0.021 -1.702 2.007
sum -15.591 4.370 7.075 17.671
Atomic orbital electron populations
1.21813 0.94963 1.01847 1.01780 1.21496 0.96965 0.93888 1.01997
1.22404 0.91982 0.97270 0.91707 0.92922 1.22195 0.97486 1.01034
0.92738 0.86792 1.20636 0.80083 0.79651 0.87096 1.90621 1.50905
1.51722 1.53679 1.49521 1.04987 1.53950 1.26184 1.22914 0.83712
0.96404 0.97071 1.23060 0.95911 0.95882 0.97818 0.87916 1.21779
0.90537 1.02045 0.83804 1.44737 1.59325 1.26136 1.03722 1.19329
1.23868 1.02384 0.90642 0.90574 1.25440 1.02156 1.00479 0.97077
1.69784 1.48657 1.31555 1.09022 0.85228 0.78411 0.78574 0.77536
1.20925 1.21785 1.20822 1.21544 0.91639 0.89493 0.95974 1.22212
0.93829 0.96373 0.95505 1.21557 1.01814 0.91992 1.01862 1.22236
0.93713 0.95228 0.88311 1.22613 0.97675 0.99499 0.95048 1.23295
0.89939 0.93853 1.02204 1.64795 1.02848 1.27365 1.28510 1.22720
0.92606 0.97571 1.00945 0.91918 0.91376 0.93914 0.92530 0.90354
0.92592 0.87474 0.99593 0.87976 0.94145 0.94045 0.95674 0.91571
0.91665 0.92238 0.90691 0.92954 0.87538 0.90230 0.95134 0.87656
0.89902 0.89939 0.96786
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.58 8.79 71.98 0.63 -1.94 16
2 C -0.11 -2.14 5.38 30.60 0.16 -1.98 16
3 C 0.08 1.78 2.20 45.06 0.10 1.88 16
4 H 0.05 1.57 5.92 -2.39 -0.01 1.56 16
5 C -0.11 -2.74 2.46 -10.66 -0.03 -2.76 16
6 H 0.11 2.60 7.69 -2.39 -0.02 2.58 16
7 C 0.53 16.93 7.17 87.66 0.63 17.55 16
8 O -0.59 -22.49 15.50 -3.03 -0.05 -22.54 16
9 N -0.61 -19.56 3.28 -803.50 -2.64 -22.19 16
10 C 0.12 3.77 5.92 86.15 0.51 4.28 16
11 C -0.11 -3.53 3.66 -9.38 -0.03 -3.57 16
12 H 0.10 2.91 7.90 -2.39 -0.02 2.90 16
13 C 0.14 6.44 5.55 86.50 0.48 6.92 16
14 N -0.62 -29.76 3.39 -695.12 -2.36 -32.12 16
15 C -0.23 -12.51 10.34 84.03 0.87 -11.64 16
16 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16
17 C -0.06 -3.16 5.49 84.86 0.47 -2.69 16
18 N -0.94 -52.27 10.07 21.65 0.22 -52.06 16
19 Si 0.97 44.20 29.55 68.60 2.03 46.23 16
20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16
21 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16
22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16
23 C 0.14 5.47 6.18 86.48 0.53 6.01 16
24 C -0.08 -2.48 1.08 -50.78 -0.05 -2.54 16
25 C -0.11 -2.94 8.60 71.98 0.62 -2.32 16
26 C 0.13 4.32 6.16 86.51 0.53 4.86 16
27 C -0.11 -2.14 5.39 31.80 0.17 -1.97 16
28 C 0.03 0.66 6.56 86.65 0.57 1.23 16
29 N -0.51 -10.39 5.07 -884.05 -4.48 -14.87 16
30 C 0.01 0.18 9.09 127.69 1.16 1.34 16
31 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16
32 H 0.07 1.11 6.21 -2.39 -0.01 1.09 16
33 H 0.04 0.80 8.13 -2.39 -0.02 0.79 16
34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16
36 H 0.06 2.14 7.51 -2.38 -0.02 2.13 16
37 H 0.11 2.67 5.60 -2.39 -0.01 2.65 16
38 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16
39 H 0.10 5.16 4.86 -2.38 -0.01 5.14 16
40 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16
41 H 0.04 1.62 7.59 -2.39 -0.02 1.60 16
42 H 0.03 0.98 7.88 -2.38 -0.02 0.96 16
43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16
45 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16
46 H 0.07 2.48 7.66 -2.39 -0.02 2.46 16
47 H 0.05 2.01 7.53 -2.39 -0.02 1.99 16
48 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16
49 H 0.08 1.60 6.34 -2.39 -0.02 1.59 16
50 H 0.03 0.67 8.02 -2.39 -0.02 0.65 16
51 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16
52 H 0.08 1.35 5.39 -2.39 -0.01 1.34 16
53 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
54 H 0.01 0.29 7.94 -2.39 -0.02 0.27 16
Total: -1.00 -63.85 397.96 0.91 -62.94
By element:
Atomic # 1 Polarization: 21.12 SS G_CDS: 0.87 Total: 21.98 kcal
Atomic # 6 Polarization: 5.32 SS G_CDS: 7.32 Total: 12.64 kcal
Atomic # 7 Polarization: -111.99 SS G_CDS: -9.26 Total: -121.25 kcal
Atomic # 8 Polarization: -22.49 SS G_CDS: -0.05 Total: -22.54 kcal
Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal
Total: -63.85 0.91 -62.94 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001091685022.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.302 kcal
(2) G-P(sol) polarization free energy of solvation -63.849 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.547 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.939 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.637 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.32 seconds