Wall clock time and date at job start Tue Mar 31 2020 19:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52993 * 109.46818 * 2 1 4 4 N 1.46904 * 109.46776 * 179.97438 * 3 2 1 5 5 C 1.47844 * 110.99784 * 74.35733 * 4 3 2 6 6 C 1.54907 * 104.79808 * 146.36092 * 5 4 3 7 7 C 1.55394 * 101.74312 * 323.02224 * 6 5 4 8 8 C 1.47441 * 111.00364 * 195.19750 * 4 3 2 9 9 H 1.08993 * 109.88847 * 117.17404 * 8 4 3 10 10 C 1.50707 * 109.88390 * 356.15128 * 8 4 3 11 11 O 1.21278 * 120.00356 * 308.86329 * 10 8 4 12 12 N 1.34780 * 119.99728 * 128.86615 * 10 8 4 13 13 C 1.47201 * 126.70376 * 0.02804 * 12 10 8 14 14 C 1.53739 * 106.42551 * 211.34695 * 13 12 10 15 15 H 1.09004 * 112.72120 * 104.04444 * 14 13 12 16 16 C 1.54447 * 109.01552 * 229.44935 * 14 13 12 17 17 N 1.48337 * 104.32437 * 137.35904 * 16 14 13 18 18 C 1.36939 * 128.19496 * 138.19334 * 17 16 14 19 19 H 1.08001 * 119.99580 * 195.39621 * 18 17 16 20 20 C 1.38807 * 120.00285 * 15.39284 * 18 17 16 21 21 N 1.31617 * 119.99825 * 23.03840 * 20 18 17 22 22 Si 1.86803 * 120.00082 * 203.03290 * 20 18 17 23 23 H 1.48496 * 109.47080 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.46924 * 60.00342 * 22 20 18 25 25 H 1.48500 * 109.47219 * 300.00363 * 22 20 18 26 26 C 1.48331 * 103.60302 * 318.45935 * 17 16 14 27 27 C 1.54021 * 104.53363 * 41.50770 * 26 17 16 28 28 C 1.53005 * 112.12774 * 97.20384 * 27 26 17 29 29 C 1.47188 * 126.70317 * 179.97438 * 12 10 8 30 30 H 1.08996 * 109.46972 * 300.00016 * 1 2 3 31 31 H 1.08995 * 109.46445 * 60.00158 * 1 2 3 32 32 H 1.08997 * 109.46825 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46972 * 239.99984 * 2 1 3 34 34 H 1.09003 * 109.46851 * 120.00358 * 2 1 3 35 35 H 1.08996 * 109.47362 * 60.00223 * 3 2 1 36 36 H 1.08993 * 109.47776 * 299.99657 * 3 2 1 37 37 H 1.09000 * 110.37695 * 265.19401 * 5 4 3 38 38 H 1.09000 * 110.37528 * 27.53680 * 5 4 3 39 39 H 1.09005 * 110.98665 * 81.01927 * 6 5 4 40 40 H 1.09000 * 110.99299 * 204.79966 * 6 5 4 41 41 H 1.08998 * 110.67630 * 277.17580 * 7 6 5 42 42 H 1.08997 * 110.85221 * 153.85740 * 7 6 5 43 43 H 1.09002 * 110.06561 * 92.10340 * 13 12 10 44 44 H 1.09001 * 110.06369 * 330.59204 * 13 12 10 45 45 H 1.09001 * 110.46375 * 18.65671 * 16 14 13 46 46 H 1.09002 * 110.57950 * 256.12784 * 16 14 13 47 47 H 0.96997 * 120.00417 * 6.13614 * 21 20 18 48 48 H 1.08999 * 110.45977 * 160.26068 * 26 17 16 49 49 H 1.09005 * 110.45922 * 282.82943 * 26 17 16 50 50 H 1.09007 * 109.46469 * 302.42010 * 28 27 26 51 51 H 1.09001 * 109.47018 * 62.41170 * 28 27 26 52 52 H 1.08997 * 109.47122 * 182.41926 * 28 27 26 53 53 H 1.09000 * 110.06694 * 29.41557 * 29 12 10 54 54 H 1.08999 * 110.11479 * 267.91953 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0394 1.0701 -1.3282 6 6 5.3453 1.8899 -1.4770 7 6 4.9586 3.2284 -0.7889 8 6 4.0374 2.7708 0.3615 9 1 4.6069 2.7041 1.2884 10 6 2.9010 3.7467 0.5274 11 8 2.0644 3.8571 -0.3437 12 7 2.8144 4.4967 1.6438 13 6 3.7420 4.4835 2.7867 14 6 2.9028 4.8150 4.0315 15 1 2.6949 3.9382 4.6449 16 6 3.6066 5.9347 4.8293 17 7 2.5077 6.8480 5.2275 18 6 2.3180 7.4695 6.4328 19 1 1.3587 7.9048 6.6709 20 6 3.3587 7.5401 7.3487 21 7 4.6050 7.4416 6.9375 22 14 2.9901 7.7750 9.1649 23 1 4.2640 7.8184 9.9269 24 1 2.1598 6.6442 9.6518 25 1 2.2536 9.0497 9.3597 26 6 1.6594 6.9234 4.0130 27 6 1.6085 5.4768 3.4867 28 6 0.3437 4.7435 3.9378 29 6 1.7745 5.4898 1.9580 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 4.2553 0.0023 -1.3651 38 1 3.3298 1.3418 -2.1098 39 1 6.1706 1.4080 -0.9526 40 1 5.5909 2.0460 -2.5274 41 1 4.4189 3.8749 -1.4808 42 1 5.8420 3.7330 -0.3977 43 1 4.5179 5.2363 2.6474 44 1 4.1925 3.4965 2.8913 45 1 4.3265 6.4569 4.1991 46 1 4.0999 5.5250 5.7108 47 1 4.8015 7.4092 5.9882 48 1 0.6582 7.2701 4.2685 49 1 2.1135 7.5806 3.2713 50 1 0.2906 4.7470 5.0266 51 1 -0.5330 5.2465 3.5297 52 1 0.3725 3.7148 3.5787 53 1 0.8359 5.2133 1.4777 54 1 2.0877 6.4790 1.6241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091716976.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:49 Heat of formation + Delta-G solvation = -15.536932 kcal Electronic energy + Delta-G solvation = -31301.898280 eV Core-core repulsion = 27466.437003 eV Total energy + Delta-G solvation = -3835.461277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.16763 -40.85630 -38.59819 -36.84145 -35.51249 -34.64457 -32.61908 -31.75471 -31.61185 -30.60462 -28.01225 -27.27279 -26.82849 -26.43251 -24.36033 -22.98583 -22.68518 -22.24547 -21.74742 -20.37501 -19.70730 -19.32131 -18.48055 -17.18314 -17.02601 -16.65955 -16.30237 -16.20975 -15.98398 -15.66854 -15.62303 -15.32965 -15.16548 -14.61323 -14.37789 -14.35238 -14.10738 -13.81326 -13.62606 -13.52466 -13.20570 -13.11419 -12.95203 -12.88530 -12.66453 -12.53930 -12.40308 -12.36892 -12.25662 -12.13057 -11.91199 -11.85635 -11.78193 -11.71086 -11.62999 -11.58657 -11.52868 -11.43704 -11.01708 -10.60485 -9.86115 -9.36892 -9.06124 -8.32135 -5.31551 1.35920 1.59263 1.66616 1.82282 1.85260 2.64256 2.87343 3.14806 3.21786 3.31741 3.44065 3.62047 3.67500 3.80308 3.80949 3.98906 4.02665 4.08844 4.11193 4.17187 4.19839 4.29971 4.36267 4.42516 4.48876 4.54600 4.58946 4.60424 4.66328 4.71042 4.77731 4.79555 4.81522 4.82930 4.88511 4.91579 4.93809 4.98547 5.03717 5.04290 5.10965 5.15172 5.19676 5.22509 5.25796 5.28616 5.34313 5.35174 5.62752 5.79716 5.92249 6.29551 6.40565 6.84822 6.95929 7.67506 8.34108 9.05012 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.017966 B = 0.002952 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.107611 B = 9481.867544 C =10095.582521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C 0.052 3.948 4 N -0.509 5.509 5 C 0.036 3.964 6 C -0.117 4.117 7 C -0.128 4.128 8 C 0.053 3.947 9 H 0.115 0.885 10 C 0.520 3.480 11 O -0.575 6.575 12 N -0.608 5.608 13 C 0.113 3.887 14 C -0.100 4.100 15 H 0.090 0.910 16 C 0.148 3.852 17 N -0.624 5.624 18 C -0.332 4.332 19 H 0.063 0.937 20 C -0.080 4.080 21 N -0.953 5.953 22 Si 1.117 2.883 23 H -0.292 1.292 24 H -0.280 1.280 25 H -0.278 1.278 26 C 0.137 3.863 27 C -0.074 4.074 28 C -0.113 4.113 29 C 0.122 3.878 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.100 0.900 38 H 0.041 0.959 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.020 0.980 46 H 0.041 0.959 47 H 0.257 0.743 48 H 0.050 0.950 49 H 0.024 0.976 50 H 0.048 0.952 51 H 0.066 0.934 52 H 0.059 0.941 53 H 0.076 0.924 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 -14.968 -16.385 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.076 4.076 4 N -0.233 5.233 5 C -0.091 4.091 6 C -0.155 4.155 7 C -0.166 4.166 8 C -0.058 4.058 9 H 0.132 0.868 10 C 0.310 3.690 11 O -0.455 6.455 12 N -0.340 5.340 13 C -0.010 4.010 14 C -0.121 4.121 15 H 0.109 0.891 16 C 0.022 3.978 17 N -0.349 5.349 18 C -0.460 4.460 19 H 0.080 0.920 20 C -0.275 4.275 21 N -0.596 5.596 22 Si 0.941 3.059 23 H -0.218 1.218 24 H -0.206 1.206 25 H -0.204 1.204 26 C 0.011 3.989 27 C -0.077 4.077 28 C -0.170 4.170 29 C -0.001 4.001 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.038 0.962 46 H 0.059 0.941 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.042 0.958 50 H 0.067 0.933 51 H 0.085 0.915 52 H 0.078 0.922 53 H 0.094 0.906 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.992 -15.149 -14.914 21.281 hybrid contribution -1.079 1.263 -1.827 2.470 sum -2.071 -13.885 -16.741 21.848 Atomic orbital electron populations 1.21708 0.95251 1.02324 1.01327 1.21470 0.95756 0.95089 1.02692 1.22544 0.87150 0.97631 1.00257 1.64134 1.08277 1.21961 1.28976 1.23256 0.95954 1.01569 0.88288 1.22754 0.97385 0.93371 1.01957 1.22806 0.99006 0.99221 0.95614 1.22800 0.93384 0.87157 1.02449 0.86774 1.21195 0.87349 0.80571 0.79856 1.90670 1.43939 1.68791 1.42111 1.48756 1.27685 1.39223 1.18350 1.22275 0.91908 1.03460 0.83362 1.22958 0.94916 0.98373 0.95821 0.89145 1.21768 0.90472 0.89569 0.96003 1.45396 1.27453 1.52369 1.09658 1.20041 0.97761 1.35235 0.92955 0.91957 1.27072 0.92017 0.99628 1.08741 1.70884 1.19368 1.52142 1.17244 0.82817 0.75045 0.76998 0.71000 1.21769 1.20636 1.20350 1.21888 0.94984 0.93710 0.88274 1.22146 0.96058 0.96333 0.93133 1.21517 0.95231 0.99402 1.00843 1.22019 0.92127 0.91935 0.93997 0.93581 0.93254 0.90982 0.91207 0.91428 0.93657 0.93866 0.88216 0.94099 0.88866 0.88916 0.92333 0.88335 0.90540 0.88031 0.96248 0.94087 0.93287 0.93105 0.95798 0.93281 0.91540 0.92203 0.90584 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.91 71.99 0.71 -1.95 16 2 C -0.11 -2.15 6.04 30.60 0.18 -1.96 16 3 C 0.05 1.27 3.41 86.30 0.29 1.56 16 4 N -0.51 -10.96 5.13 -864.92 -4.43 -15.39 16 5 C 0.04 0.62 6.05 86.77 0.52 1.14 16 6 C -0.12 -1.60 7.08 32.07 0.23 -1.37 16 7 C -0.13 -2.32 6.48 31.86 0.21 -2.11 16 8 C 0.05 1.17 3.64 44.51 0.16 1.33 16 9 H 0.11 2.29 6.02 -2.39 -0.01 2.27 16 10 C 0.52 14.63 4.90 87.66 0.43 15.06 16 11 O -0.58 -19.43 14.05 -3.02 -0.04 -19.48 16 12 N -0.61 -17.09 3.32 -815.33 -2.71 -19.80 16 13 C 0.11 3.03 6.26 86.49 0.54 3.57 16 14 C -0.10 -3.33 3.74 -9.28 -0.03 -3.37 16 15 H 0.09 2.99 7.93 -2.38 -0.02 2.97 16 16 C 0.15 6.49 4.64 86.52 0.40 6.89 16 17 N -0.62 -30.72 3.29 -687.77 -2.26 -32.99 16 18 C -0.33 -18.42 10.26 84.03 0.86 -17.55 16 19 H 0.06 3.43 7.93 -2.91 -0.02 3.41 16 20 C -0.08 -4.48 5.18 84.86 0.44 -4.04 16 21 N -0.95 -57.22 12.57 21.65 0.27 -56.95 16 22 Si 1.12 50.40 29.98 68.60 2.06 52.46 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 25 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 26 C 0.14 5.47 6.36 86.37 0.55 6.02 16 27 C -0.07 -2.41 1.08 -50.81 -0.05 -2.47 16 28 C -0.11 -3.33 8.59 71.98 0.62 -2.71 16 29 C 0.12 3.66 6.23 86.51 0.54 4.20 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.18 7.68 -2.39 -0.02 1.16 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.04 1.29 6.55 -2.39 -0.02 1.28 16 36 H 0.04 1.24 6.06 -2.39 -0.01 1.23 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.04 0.78 7.54 -2.39 -0.02 0.76 16 39 H 0.09 1.05 8.14 -2.38 -0.02 1.04 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.28 7.73 -2.39 -0.02 1.26 16 42 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 2.07 7.10 -2.39 -0.02 2.06 16 44 H 0.10 2.25 6.52 -2.39 -0.02 2.23 16 45 H 0.02 0.88 6.89 -2.39 -0.02 0.86 16 46 H 0.04 2.05 6.88 -2.39 -0.02 2.03 16 47 H 0.26 15.46 6.14 -92.71 -0.57 14.89 16 48 H 0.05 2.01 7.90 -2.39 -0.02 1.99 16 49 H 0.02 0.97 7.16 -2.38 -0.02 0.95 16 50 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 51 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 53 H 0.08 2.28 7.63 -2.39 -0.02 2.26 16 54 H 0.07 2.02 7.10 -2.39 -0.02 2.00 16 Total: -1.00 -67.89 399.81 0.55 -67.34 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 1.06 Total: 22.55 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 6.60 Total: 2.25 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -9.13 Total: -125.12 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.04 Total: -19.48 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.06 Total: 52.46 kcal Total: -67.89 0.55 -67.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091716976.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.806 kcal (2) G-P(sol) polarization free energy of solvation -67.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds