Wall clock time and date at job start Tue Mar 31 2020 18:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47193 * 2 1 4 4 C 1.52993 * 109.47315 * 120.00409 * 2 1 3 5 5 N 1.46900 * 109.47251 * 65.47340 * 4 2 1 6 6 C 1.48538 * 110.99592 * 58.69116 * 5 4 2 7 7 C 1.54936 * 103.22630 * 159.71838 * 6 5 4 8 8 C 1.54596 * 102.92398 * 322.58693 * 7 6 5 9 9 H 1.09004 * 110.31136 * 263.04340 * 8 7 6 10 10 C 1.50703 * 110.39557 * 140.91198 * 8 7 6 11 11 O 1.21278 * 120.00423 * 244.23387 * 10 8 7 12 12 N 1.34780 * 119.99472 * 64.23711 * 10 8 7 13 13 C 1.46501 * 119.99476 * 180.02562 * 12 10 8 14 14 H 1.08994 * 110.56198 * 32.98427 * 13 12 10 15 15 C 1.54860 * 110.62453 * 155.88524 * 13 12 10 16 16 C 1.55846 * 103.44448 * 118.48563 * 15 13 12 17 17 H 1.09005 * 115.55904 * 158.81396 * 16 15 13 18 18 C 1.55845 * 105.06775 * 287.42399 * 16 15 13 19 19 C 1.57378 * 102.54332 * 72.37934 * 18 16 15 20 20 C 1.55847 * 110.62825 * 270.08121 * 13 12 10 21 21 H 1.08992 * 115.55842 * 82.69844 * 20 13 12 22 22 N 1.50236 * 101.05042 * 32.93903 * 16 15 13 23 23 C 1.36938 * 130.83932 * 126.04085 * 22 16 15 24 24 H 1.08006 * 120.00223 * 338.50020 * 23 22 16 25 25 C 1.38808 * 120.00063 * 158.49270 * 23 22 16 26 26 N 1.31623 * 120.00052 * 148.89890 * 25 23 22 27 27 Si 1.86801 * 120.00375 * 328.90407 * 25 23 22 28 28 H 1.48502 * 109.47250 * 86.60677 * 27 25 23 29 29 H 1.48502 * 109.47099 * 206.61268 * 27 25 23 30 30 H 1.48506 * 109.46607 * 326.60688 * 27 25 23 31 31 C 1.47899 * 111.00239 * 176.08408 * 5 4 2 32 32 H 1.09000 * 109.47034 * 299.99988 * 1 2 3 33 33 H 1.09002 * 109.47249 * 59.99670 * 1 2 3 34 34 H 1.09003 * 109.47240 * 179.97438 * 1 2 3 35 35 H 1.09005 * 109.46499 * 240.00472 * 2 1 3 36 36 H 1.08998 * 109.46661 * 64.63779 * 3 2 1 37 37 H 1.08992 * 109.46996 * 184.64020 * 3 2 1 38 38 H 1.09006 * 109.47173 * 304.64113 * 3 2 1 39 39 H 1.08992 * 109.47427 * 185.47818 * 4 2 1 40 40 H 1.09010 * 109.47059 * 305.47787 * 4 2 1 41 41 H 1.08993 * 110.66950 * 278.15258 * 6 5 4 42 42 H 1.09003 * 110.66703 * 41.28656 * 6 5 4 43 43 H 1.09000 * 110.72893 * 204.23045 * 7 6 5 44 44 H 1.08997 * 110.87795 * 81.01635 * 7 6 5 45 45 H 0.96998 * 120.00164 * 0.02562 * 12 10 8 46 46 H 1.08993 * 110.62702 * 236.97569 * 15 13 12 47 47 H 1.09000 * 110.62211 * 0.02562 * 15 13 12 48 48 H 1.09000 * 110.62756 * 190.31277 * 18 16 15 49 49 H 1.08996 * 110.62129 * 313.33445 * 18 16 15 50 50 H 1.08999 * 110.22845 * 241.19874 * 19 18 16 51 51 H 1.09003 * 111.08220 * 118.30015 * 19 18 16 52 52 H 0.97001 * 120.00021 * 180.02562 * 26 25 23 53 53 H 1.09002 * 109.92038 * 333.51696 * 31 5 4 54 54 H 1.09004 * 109.91585 * 94.80403 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6613 -2.1392 1.1848 6 6 2.2198 -2.7847 -0.0308 7 6 2.1899 -4.2928 0.3231 8 6 2.5580 -4.3029 1.8246 9 1 3.6215 -4.5050 1.9520 10 6 1.7390 -5.3329 2.5591 11 8 0.9511 -4.9848 3.4129 12 7 1.8822 -6.6409 2.2673 13 6 1.0856 -7.6420 2.9810 14 1 0.1055 -7.2397 3.2371 15 6 0.9420 -8.9302 2.1335 16 6 1.6228 -10.0210 3.0141 17 1 1.3335 -11.0491 2.7966 18 6 3.1492 -9.7189 2.9252 19 6 3.2906 -8.4144 3.7943 20 6 1.8315 -8.1268 4.2606 21 1 1.7250 -7.4882 5.1374 22 7 1.2926 -9.5251 4.3933 23 6 0.6856 -10.1518 5.4488 24 1 0.0600 -11.0153 5.2770 25 6 0.8744 -9.6774 6.7395 26 7 -0.0807 -9.8094 7.6355 27 14 2.4840 -8.8516 7.2051 28 1 2.4128 -7.4059 6.8732 29 1 2.7204 -9.0141 8.6621 30 1 3.5985 -9.4786 6.4499 31 6 2.2181 -2.8891 2.3315 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.7461 1.9317 0.9286 37 1 3.1268 1.4436 -0.0831 38 1 1.6104 1.9798 -0.8455 39 1 3.1256 -0.6371 1.2995 40 1 1.5988 -0.2673 2.1365 41 1 1.5917 -2.5805 -0.8979 42 1 3.2424 -2.4513 -0.2081 43 1 2.9307 -4.8405 -0.2593 44 1 1.1945 -4.7087 0.1672 45 1 2.5126 -6.9193 1.5847 46 1 -0.1092 -9.1683 1.9718 47 1 1.4640 -8.8242 1.1825 48 1 3.7278 -10.5337 3.3604 49 1 3.4465 -9.5449 1.8912 50 1 3.6673 -7.5939 3.1837 51 1 3.9415 -8.5835 4.6521 52 1 0.0511 -9.4776 8.5374 53 1 3.1211 -2.3975 2.6936 54 1 1.4789 -2.9488 3.1304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095529582.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:07 Heat of formation + Delta-G solvation = -10.409685 kcal Electronic energy + Delta-G solvation = -30556.030201 eV Core-core repulsion = 26720.791258 eV Total energy + Delta-G solvation = -3835.238943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.73305 -40.60874 -39.19499 -36.43438 -35.48800 -34.44748 -32.41817 -31.37243 -30.82327 -30.10612 -29.41358 -27.94134 -26.54592 -25.85748 -23.70914 -22.85291 -22.56993 -21.60293 -20.84292 -20.48302 -20.33492 -18.91693 -18.50151 -17.64847 -17.19170 -16.90790 -16.32349 -16.12922 -15.75251 -15.68015 -15.36287 -15.13239 -14.91668 -14.57935 -14.47909 -14.12613 -13.94990 -13.67803 -13.43749 -13.18388 -13.15118 -13.10564 -12.92907 -12.85344 -12.70508 -12.67892 -12.47758 -12.41871 -12.33107 -12.21514 -11.84964 -11.80859 -11.76834 -11.64965 -11.57314 -11.40058 -11.36607 -10.99138 -10.77080 -10.74799 -9.99787 -9.29903 -9.09241 -8.26221 -5.39722 1.24307 1.29635 1.39578 1.68540 2.16806 2.39750 2.89491 3.04320 3.24860 3.45032 3.64723 3.78889 3.88357 3.92842 3.96414 4.00638 4.06731 4.21740 4.27689 4.32270 4.35677 4.39289 4.46232 4.50618 4.55636 4.59620 4.70912 4.71857 4.72090 4.82159 4.84126 4.84834 4.92907 4.95577 4.98731 5.03059 5.06187 5.10798 5.13026 5.15035 5.20311 5.27285 5.30025 5.33692 5.42743 5.46061 5.51066 5.62129 5.71562 5.96326 6.07339 6.13896 6.61531 6.66162 7.37365 7.46631 8.26305 8.94125 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.019252 B = 0.002707 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.021249 B =10340.587300 C =10905.068696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.145 4.145 4 C 0.052 3.948 5 N -0.530 5.530 6 C 0.036 3.964 7 C -0.104 4.104 8 C -0.111 4.111 9 H 0.131 0.869 10 C 0.512 3.488 11 O -0.590 6.590 12 N -0.695 5.695 13 C 0.143 3.857 14 H 0.047 0.953 15 C -0.115 4.115 16 C 0.125 3.875 17 H 0.103 0.897 18 C -0.117 4.117 19 C -0.134 4.134 20 C 0.102 3.898 21 H 0.049 0.951 22 N -0.626 5.626 23 C -0.216 4.216 24 H 0.063 0.937 25 C -0.032 4.032 26 N -0.944 5.944 27 Si 0.918 3.082 28 H -0.293 1.293 29 H -0.309 1.309 30 H -0.252 1.252 31 C 0.043 3.957 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.117 0.883 44 H 0.065 0.935 45 H 0.418 0.582 46 H 0.063 0.937 47 H 0.117 0.883 48 H 0.052 0.948 49 H 0.113 0.887 50 H 0.094 0.906 51 H 0.034 0.966 52 H 0.260 0.740 53 H 0.058 0.942 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.888 16.651 -25.108 32.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.076 4.076 5 N -0.255 5.255 6 C -0.091 4.091 7 C -0.142 4.142 8 C -0.133 4.133 9 H 0.148 0.852 10 C 0.300 3.700 11 O -0.470 6.470 12 N -0.348 5.348 13 C 0.036 3.964 14 H 0.065 0.935 15 C -0.154 4.154 16 C 0.021 3.979 17 H 0.121 0.879 18 C -0.156 4.156 19 C -0.173 4.173 20 C -0.005 4.005 21 H 0.067 0.933 22 N -0.350 5.350 23 C -0.344 4.344 24 H 0.081 0.919 25 C -0.227 4.227 26 N -0.590 5.590 27 Si 0.747 3.253 28 H -0.221 1.221 29 H -0.237 1.237 30 H -0.176 1.176 31 C -0.085 4.085 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.136 0.864 44 H 0.084 0.916 45 H 0.257 0.743 46 H 0.082 0.918 47 H 0.135 0.865 48 H 0.071 0.929 49 H 0.131 0.869 50 H 0.113 0.887 51 H 0.053 0.947 52 H 0.069 0.931 53 H 0.076 0.924 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.626 16.772 -24.215 31.314 hybrid contribution 1.108 0.254 1.675 2.025 sum 11.735 17.026 -22.540 30.588 Atomic orbital electron populations 1.21714 0.95202 1.01575 1.01038 1.21127 0.96182 0.96267 0.97223 1.21803 1.01189 0.95129 1.02118 1.22387 0.98139 0.88064 0.99055 1.64760 1.55938 1.02481 1.02295 1.23317 0.99175 0.92974 0.93610 1.22528 1.03239 0.97244 0.91235 1.22179 1.01085 0.92683 0.97311 0.85156 1.21134 0.82609 0.84043 0.82229 1.90713 1.39679 1.81180 1.35434 1.45883 1.43130 1.04941 1.40820 1.22004 0.93425 0.88648 0.92350 0.93513 1.23082 1.01669 0.92583 0.98098 1.23365 0.94166 0.97165 0.83252 0.87947 1.23377 0.96089 0.95859 1.00297 1.23468 0.95003 0.99419 0.99393 1.23525 0.94832 0.86669 0.95465 0.93257 1.46949 1.69121 1.07878 1.11003 1.18466 1.19594 1.11801 0.84547 0.91910 1.25593 1.00178 1.00821 0.96125 1.70082 1.32166 1.51299 1.05422 0.86203 0.85184 0.77984 0.75889 1.22059 1.23734 1.17608 1.22764 0.98903 0.92019 0.94837 0.93850 0.92348 0.93143 0.90328 0.93022 0.92147 0.91734 0.93918 0.92098 0.89090 0.91822 0.86432 0.91610 0.74275 0.91801 0.86479 0.92926 0.86891 0.88726 0.94697 0.93137 0.92411 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.08 71.98 0.65 -1.49 16 2 C -0.09 -1.17 2.75 -10.79 -0.03 -1.20 16 3 C -0.14 -1.53 9.19 71.98 0.66 -0.87 16 4 C 0.05 0.84 4.21 86.30 0.36 1.21 16 5 N -0.53 -10.28 4.83 -883.02 -4.26 -14.54 16 6 C 0.04 0.47 5.35 86.65 0.46 0.94 16 7 C -0.10 -1.32 6.58 31.80 0.21 -1.12 16 8 C -0.11 -2.06 3.38 -10.66 -0.04 -2.10 16 9 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 10 C 0.51 14.82 7.01 87.66 0.61 15.44 16 11 O -0.59 -24.75 14.90 -3.02 -0.05 -24.80 16 12 N -0.70 -17.17 3.68 -434.90 -1.60 -18.77 16 13 C 0.14 4.97 3.13 46.61 0.15 5.11 16 14 H 0.05 2.04 7.58 -2.39 -0.02 2.03 16 15 C -0.12 -3.15 6.20 32.21 0.20 -2.96 16 16 C 0.13 4.18 5.43 46.23 0.25 4.43 16 17 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 18 C -0.12 -3.17 6.61 33.12 0.22 -2.95 16 19 C -0.13 -4.41 6.14 33.13 0.20 -4.21 16 20 C 0.10 4.40 3.59 46.19 0.17 4.57 16 21 H 0.05 2.61 5.37 -2.39 -0.01 2.60 16 22 N -0.63 -29.64 2.65 -614.73 -1.63 -31.27 16 23 C -0.22 -12.62 10.79 84.03 0.91 -11.72 16 24 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 25 C -0.03 -1.95 5.42 84.86 0.46 -1.49 16 26 N -0.94 -62.35 13.97 21.65 0.30 -62.04 16 27 Si 0.92 49.39 24.84 68.60 1.70 51.09 16 28 H -0.29 -15.98 6.20 99.48 0.62 -15.36 16 29 H -0.31 -16.79 7.11 99.48 0.71 -16.08 16 30 H -0.25 -12.61 6.16 99.48 0.61 -12.00 16 31 C 0.04 0.97 6.31 86.45 0.55 1.52 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.95 7.77 -2.39 -0.02 0.94 16 35 H 0.08 0.91 6.62 -2.38 -0.02 0.89 16 36 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.04 0.61 7.98 -2.39 -0.02 0.59 16 40 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.09 1.08 7.53 -2.39 -0.02 1.06 16 42 H 0.06 0.62 8.01 -2.39 -0.02 0.60 16 43 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 1.08 7.86 -2.39 -0.02 1.06 16 45 H 0.42 6.23 7.92 -92.71 -0.73 5.50 16 46 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.12 1.99 7.37 -2.39 -0.02 1.97 16 48 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.11 1.87 7.80 -2.39 -0.02 1.85 16 50 H 0.09 2.36 6.39 -2.39 -0.02 2.34 16 51 H 0.03 1.31 6.20 -2.39 -0.01 1.30 16 52 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 53 H 0.06 1.13 7.67 -2.39 -0.02 1.11 16 54 H 0.06 2.01 6.42 -2.38 -0.02 2.00 16 Total: -1.00 -82.57 399.91 0.43 -82.14 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -0.05 Total: 15.08 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 6.00 Total: 3.10 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -7.18 Total: -126.61 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.05 Total: -24.80 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 1.70 Total: 51.09 kcal Total: -82.57 0.43 -82.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095529582.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.730 kcal (2) G-P(sol) polarization free energy of solvation -82.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds