Wall clock time and date at job start Tue Mar 31 2020 19:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46727 * 2 1 4 4 N 1.46897 * 109.46947 * 119.99988 * 2 1 3 5 5 C 1.48559 * 110.99820 * 288.93285 * 4 2 1 6 6 C 1.54383 * 104.59251 * 200.96319 * 5 4 2 7 7 C 1.54260 * 105.06122 * 23.85335 * 6 5 4 8 8 C 1.48557 * 110.99774 * 173.51510 * 4 2 1 9 9 H 1.09004 * 110.51644 * 40.20885 * 8 4 2 10 10 C 1.52999 * 110.41182 * 277.81763 * 8 4 2 11 11 C 1.50694 * 109.47260 * 178.51103 * 10 8 4 12 12 O 1.21279 * 120.00376 * 354.78689 * 11 10 8 13 13 N 1.34784 * 120.00070 * 174.78676 * 11 10 8 14 14 C 1.46504 * 119.99762 * 180.02562 * 13 11 10 15 15 H 1.08995 * 110.68481 * 36.68182 * 14 13 11 16 16 C 1.55484 * 110.60531 * 159.82398 * 14 13 11 17 17 C 1.55848 * 103.32530 * 118.41239 * 16 14 13 18 18 H 1.08998 * 116.12488 * 159.23189 * 17 16 14 19 19 C 1.55387 * 105.04516 * 288.04094 * 17 16 14 20 20 C 1.54848 * 103.48507 * 72.07606 * 19 17 16 21 21 C 1.55834 * 103.44814 * 359.87271 * 20 19 17 22 22 H 1.08999 * 115.56456 * 158.81521 * 21 20 19 23 23 N 1.50238 * 101.04966 * 33.02422 * 17 16 14 24 24 C 1.36933 * 130.83889 * 126.07001 * 23 17 16 25 25 H 1.08003 * 119.99941 * 352.19950 * 24 23 17 26 26 C 1.38809 * 120.00081 * 172.47730 * 24 23 17 27 27 N 1.31614 * 120.00200 * 159.31091 * 26 24 23 28 28 Si 1.86803 * 119.99929 * 339.30590 * 26 24 23 29 29 H 1.48503 * 109.46709 * 88.55988 * 28 26 24 30 30 H 1.48501 * 109.47316 * 208.55704 * 28 26 24 31 31 H 1.48491 * 109.47125 * 328.56058 * 28 26 24 32 32 H 1.09001 * 109.46840 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47405 * 299.99754 * 1 2 3 34 34 H 1.09004 * 109.47026 * 60.00390 * 1 2 3 35 35 H 1.08992 * 109.47095 * 240.00666 * 2 1 3 36 36 H 1.08997 * 109.46724 * 172.06030 * 3 2 1 37 37 H 1.08998 * 109.47308 * 292.06587 * 3 2 1 38 38 H 1.09002 * 109.46738 * 52.06546 * 3 2 1 39 39 H 1.08993 * 110.41486 * 82.18579 * 5 4 2 40 40 H 1.09005 * 110.51716 * 319.78658 * 5 4 2 41 41 H 1.09000 * 110.32556 * 264.95401 * 6 5 4 42 42 H 1.09004 * 110.41258 * 142.79472 * 6 5 4 43 43 H 1.09009 * 110.32260 * 241.10587 * 7 6 5 44 44 H 1.08998 * 110.32819 * 118.89996 * 7 6 5 45 45 H 1.09002 * 109.47136 * 58.50975 * 10 8 4 46 46 H 1.09003 * 109.47384 * 298.51118 * 10 8 4 47 47 H 0.96998 * 119.99802 * 359.97438 * 13 11 10 48 48 H 1.09006 * 110.61163 * 359.97438 * 16 14 13 49 49 H 1.09001 * 110.89364 * 236.95979 * 16 14 13 50 50 H 1.09001 * 110.71419 * 313.52093 * 19 17 16 51 51 H 1.08997 * 110.63586 * 190.59313 * 19 17 16 52 52 H 1.09001 * 110.62275 * 241.38156 * 20 19 17 53 53 H 1.09001 * 110.75980 * 118.43146 * 20 19 17 54 54 H 0.97003 * 120.00684 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.7728 0.1177 2.4199 6 6 2.7719 -0.4322 3.4605 7 6 3.9058 -1.0684 2.6303 8 6 3.4963 -0.8494 1.1580 9 1 3.9653 0.0518 0.7630 10 6 3.8802 -2.0644 0.3110 11 6 5.3814 -2.1823 0.2531 12 8 6.0769 -1.3229 0.7517 13 7 5.9513 -3.2429 -0.3527 14 6 7.4108 -3.3577 -0.4084 15 1 7.8616 -2.9856 0.5115 16 6 7.8341 -4.8302 -0.6731 17 6 8.5937 -4.7469 -2.0314 18 1 9.2756 -5.5684 -2.2511 19 6 7.4903 -4.4935 -3.0957 20 6 7.0682 -3.0264 -2.8359 21 6 7.9747 -2.5941 -1.6444 22 1 8.1115 -1.5195 -1.5232 23 7 9.2200 -3.3853 -1.9280 24 6 10.5237 -2.9870 -2.0584 25 1 11.3075 -3.7248 -2.1458 26 6 10.8383 -1.6351 -2.0723 27 7 12.0619 -1.2413 -1.7894 28 14 9.5252 -0.3748 -2.4926 29 1 8.8105 0.0271 -1.2545 30 1 10.1623 0.8183 -3.1058 31 1 8.5589 -0.9678 -3.4516 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 1.8933 -0.5137 -0.8900 36 1 3.1206 1.4459 0.1420 37 1 1.7971 1.9138 -0.9524 38 1 1.5653 1.9957 0.8106 39 1 0.7487 -0.0196 2.7667 40 1 1.9691 1.1720 2.2248 41 1 2.2917 -1.1853 4.0853 42 1 3.1626 0.3772 4.0772 43 1 3.9821 -2.1339 2.8475 44 1 4.8527 -0.5702 2.8381 45 1 3.4862 -1.9430 -0.6980 46 1 3.4620 -2.9661 0.7584 47 1 5.3951 -3.9304 -0.7512 48 1 6.9571 -5.4716 -0.7619 49 1 8.4947 -5.1924 0.1146 50 1 6.6474 -5.1680 -2.9454 51 1 7.8945 -4.6043 -4.1019 52 1 6.0159 -2.9734 -2.5568 53 1 7.2636 -2.4073 -3.7115 54 1 12.2820 -0.2966 -1.7995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095532664.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:25 Heat of formation + Delta-G solvation = 2.100969 kcal Electronic energy + Delta-G solvation = -31150.001216 eV Core-core repulsion = 27315.304776 eV Total energy + Delta-G solvation = -3834.696440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.74999 -40.84015 -39.57433 -35.54641 -35.31880 -34.44580 -32.76018 -31.49508 -30.92297 -30.03678 -29.67684 -28.17726 -27.18413 -25.85572 -23.51307 -23.02600 -22.43589 -21.58911 -20.96777 -20.45516 -20.08789 -18.98319 -18.34970 -17.70991 -17.33552 -16.89070 -16.54162 -16.07191 -15.80458 -15.55577 -15.50061 -15.34256 -14.93294 -14.60219 -14.39877 -14.13419 -14.03880 -13.82628 -13.53897 -13.39755 -13.28852 -13.22857 -12.88666 -12.78477 -12.65269 -12.52538 -12.49944 -12.31307 -12.19896 -12.14279 -12.07303 -11.86148 -11.73781 -11.56908 -11.43950 -11.36642 -11.26575 -11.05765 -10.91026 -10.80366 -10.01516 -9.41812 -9.21418 -8.20288 -5.37889 1.22142 1.24264 1.33389 1.69568 2.13067 2.35399 2.91694 3.07613 3.20538 3.62160 3.64664 3.74010 3.87729 3.91857 3.97524 4.04326 4.06452 4.12613 4.24851 4.30025 4.32117 4.37035 4.42640 4.46450 4.47665 4.55640 4.62565 4.67845 4.69882 4.73170 4.75480 4.84876 4.90440 4.92716 4.97160 5.00922 5.02847 5.07307 5.11755 5.13343 5.17978 5.20955 5.26431 5.33913 5.35118 5.40243 5.43594 5.57800 5.68010 5.91020 6.07509 6.11656 6.59074 6.65936 7.37857 7.45998 8.19438 9.00563 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.003261 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.644996 B = 8584.712023 C = 8972.673286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.059 3.941 3 C -0.189 4.189 4 N -0.494 5.494 5 C 0.026 3.974 6 C -0.122 4.122 7 C -0.115 4.115 8 C 0.073 3.927 9 H 0.039 0.961 10 C -0.112 4.112 11 C 0.503 3.497 12 O -0.589 6.589 13 N -0.699 5.699 14 C 0.142 3.858 15 H 0.046 0.954 16 C -0.115 4.115 17 C 0.132 3.868 18 H 0.106 0.894 19 C -0.117 4.117 20 C -0.130 4.130 21 C 0.093 3.907 22 H 0.051 0.949 23 N -0.634 5.634 24 C -0.198 4.198 25 H 0.077 0.923 26 C -0.047 4.047 27 N -0.963 5.963 28 Si 0.935 3.065 29 H -0.307 1.307 30 H -0.316 1.316 31 H -0.246 1.246 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.044 0.956 45 H 0.112 0.888 46 H 0.126 0.874 47 H 0.419 0.581 48 H 0.118 0.882 49 H 0.066 0.934 50 H 0.110 0.890 51 H 0.055 0.945 52 H 0.093 0.907 53 H 0.037 0.963 54 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.724 -5.500 4.458 30.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.049 4.049 3 C -0.247 4.247 4 N -0.218 5.218 5 C -0.101 4.101 6 C -0.160 4.160 7 C -0.153 4.153 8 C -0.035 4.035 9 H 0.057 0.943 10 C -0.152 4.152 11 C 0.291 3.709 12 O -0.469 6.469 13 N -0.352 5.352 14 C 0.035 3.965 15 H 0.065 0.935 16 C -0.154 4.154 17 C 0.027 3.973 18 H 0.124 0.876 19 C -0.156 4.156 20 C -0.169 4.169 21 C -0.014 4.014 22 H 0.069 0.931 23 N -0.358 5.358 24 C -0.327 4.327 25 H 0.095 0.905 26 C -0.240 4.240 27 N -0.612 5.612 28 Si 0.769 3.231 29 H -0.237 1.237 30 H -0.246 1.246 31 H -0.171 1.171 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.063 0.937 45 H 0.130 0.870 46 H 0.144 0.856 47 H 0.258 0.742 48 H 0.137 0.863 49 H 0.085 0.915 50 H 0.129 0.871 51 H 0.074 0.926 52 H 0.111 0.889 53 H 0.056 0.944 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -29.250 -5.282 4.779 30.105 hybrid contribution 1.002 2.220 -0.372 2.464 sum -28.249 -3.062 4.407 28.754 Atomic orbital electron populations 1.21715 0.92483 1.02678 1.02111 1.21927 0.97171 0.92222 0.93625 1.22501 1.00426 0.98749 1.03037 1.65558 1.10015 1.43681 1.02526 1.23231 1.00551 0.96146 0.90201 1.22309 0.95485 1.00590 0.97600 1.22240 0.97872 1.01356 0.93860 1.22278 0.88831 0.96584 0.95840 0.94314 1.21525 0.88936 1.01277 1.03451 1.21366 0.91911 0.80876 0.76747 1.90739 1.66274 1.41778 1.48141 1.45932 1.06364 1.25057 1.57881 1.22106 0.79988 0.97684 0.96735 0.93516 1.23190 1.01247 0.92868 0.98137 1.23264 0.92731 0.86803 0.94493 0.87565 1.22877 0.98998 0.94941 0.98813 1.23030 0.99399 0.97951 0.96516 1.23598 0.87251 0.94303 0.96269 0.93141 1.47016 1.01549 1.05086 1.82191 1.18675 0.82075 0.91602 1.40329 0.90498 1.25219 0.97199 0.98346 1.03253 1.69917 1.20940 1.15387 1.54999 0.86108 0.79648 0.79339 0.77980 1.23741 1.24604 1.17073 0.91575 0.92567 0.91469 0.89914 0.94396 0.91262 0.91482 0.88621 0.93241 0.89903 0.91523 0.91119 0.93675 0.87016 0.85578 0.74164 0.86348 0.91514 0.87138 0.92629 0.88873 0.94442 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.26 71.98 0.67 -0.84 16 2 C 0.06 0.90 2.91 44.92 0.13 1.03 16 3 C -0.19 -3.20 8.19 71.98 0.59 -2.61 16 4 N -0.49 -8.44 5.03 -831.73 -4.19 -12.63 16 5 C 0.03 0.42 5.52 86.45 0.48 0.89 16 6 C -0.12 -2.12 7.00 31.49 0.22 -1.90 16 7 C -0.11 -2.64 5.63 31.49 0.18 -2.46 16 8 C 0.07 1.62 1.77 45.06 0.08 1.70 16 9 H 0.04 1.09 5.74 -2.38 -0.01 1.08 16 10 C -0.11 -2.11 5.33 29.85 0.16 -1.95 16 11 C 0.50 14.30 7.55 87.65 0.66 14.96 16 12 O -0.59 -23.93 14.69 -3.03 -0.04 -23.97 16 13 N -0.70 -17.25 3.64 -433.87 -1.58 -18.83 16 14 C 0.14 4.93 3.10 46.83 0.15 5.08 16 15 H 0.05 2.02 7.70 -2.39 -0.02 2.00 16 16 C -0.12 -3.12 6.23 32.43 0.20 -2.92 16 17 C 0.13 4.34 5.46 46.07 0.25 4.59 16 18 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 19 C -0.12 -3.14 6.42 32.05 0.21 -2.94 16 20 C -0.13 -4.28 6.13 32.21 0.20 -4.09 16 21 C 0.09 3.99 3.47 46.22 0.16 4.15 16 22 H 0.05 2.65 3.11 -2.39 -0.01 2.64 16 23 N -0.63 -29.95 2.87 -616.11 -1.77 -31.72 16 24 C -0.20 -11.61 10.96 84.03 0.92 -10.69 16 25 H 0.08 4.73 8.06 -2.91 -0.02 4.71 16 26 C -0.05 -2.95 5.50 84.86 0.47 -2.49 16 27 N -0.96 -64.41 13.97 21.65 0.30 -64.11 16 28 Si 0.93 51.99 24.59 68.60 1.69 53.68 16 29 H -0.31 -18.01 6.62 99.48 0.66 -17.36 16 30 H -0.32 -17.79 7.11 99.48 0.71 -17.08 16 31 H -0.25 -12.54 5.16 99.48 0.51 -12.03 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.62 7.30 -2.39 -0.02 0.60 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 1.25 7.21 -2.39 -0.02 1.24 16 36 H 0.04 0.83 6.06 -2.39 -0.01 0.81 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.04 6.40 -2.39 -0.02 1.02 16 39 H 0.10 1.23 7.78 -2.39 -0.02 1.21 16 40 H 0.05 0.83 5.41 -2.38 -0.01 0.82 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.07 1.53 7.80 -2.38 -0.02 1.51 16 44 H 0.04 1.31 7.72 -2.39 -0.02 1.30 16 45 H 0.11 1.68 7.27 -2.39 -0.02 1.66 16 46 H 0.13 1.72 8.06 -2.39 -0.02 1.70 16 47 H 0.42 6.26 8.01 -92.71 -0.74 5.52 16 48 H 0.12 1.97 7.34 -2.38 -0.02 1.96 16 49 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.11 1.84 7.80 -2.39 -0.02 1.82 16 51 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.09 2.37 6.48 -2.39 -0.02 2.35 16 53 H 0.04 1.40 6.76 -2.39 -0.02 1.39 16 54 H 0.26 16.60 8.31 -92.71 -0.77 15.83 16 Total: -1.00 -81.94 389.55 0.03 -81.91 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -0.09 Total: 16.13 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 5.71 Total: -0.46 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -7.23 Total: -127.28 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.04 Total: -23.97 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 1.69 Total: 53.68 kcal Total: -81.94 0.03 -81.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095532664.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.011 kcal (2) G-P(sol) polarization free energy of solvation -81.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds