Wall clock time and date at job start Tue Mar 31 2020 19:23:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53003 * 109.47219 * 2 1
4 4 N 1.46902 * 109.46780 * 180.02562 * 3 2 1
5 5 C 1.46845 * 111.00005 * 45.79214 * 4 3 2
6 6 C 1.53038 * 109.52139 * 185.83478 * 5 4 3
7 7 C 1.53120 * 109.28117 * 300.82572 * 6 5 4
8 8 C 1.53116 * 109.16107 * 57.65158 * 7 6 5
9 9 H 1.08996 * 109.53561 * 62.31058 * 8 7 6
10 10 C 1.50700 * 109.49942 * 182.40855 * 8 7 6
11 11 O 1.21279 * 119.99938 * 119.80529 * 10 8 7
12 12 N 1.34774 * 120.00008 * 299.52364 * 10 8 7
13 13 C 1.46499 * 120.00254 * 180.27529 * 12 10 8
14 14 H 1.09010 * 110.55518 * 36.92846 * 13 12 10
15 15 C 1.54850 * 110.62709 * 159.99908 * 13 12 10
16 16 C 1.55847 * 103.44540 * 118.49416 * 15 13 12
17 17 H 1.08999 * 115.56540 * 159.56371 * 16 15 13
18 18 C 1.55846 * 105.06504 * 288.17822 * 16 15 13
19 19 C 1.54853 * 103.44672 * 71.81844 * 18 16 15
20 20 C 1.55841 * 110.62915 * 274.03120 * 13 12 10
21 21 H 1.08994 * 115.56959 * 81.94187 * 20 13 12
22 22 N 1.50239 * 101.05038 * 32.93597 * 16 15 13
23 23 C 1.36945 * 130.83957 * 126.05404 * 22 16 15
24 24 H 1.07995 * 119.99917 * 179.97438 * 23 22 16
25 25 C 1.38813 * 119.99680 * 359.97112 * 23 22 16
26 26 N 1.31621 * 119.99924 * 0.02562 * 25 23 22
27 27 Si 1.86801 * 119.99970 * 179.97438 * 25 23 22
28 28 H 1.48498 * 109.46715 * 90.00299 * 27 25 23
29 29 H 1.48494 * 109.47101 * 210.00463 * 27 25 23
30 30 H 1.48502 * 109.46751 * 330.00541 * 27 25 23
31 31 C 1.46848 * 110.99807 * 170.00436 * 4 3 2
32 32 H 1.08999 * 109.46763 * 59.99452 * 1 2 3
33 33 H 1.08992 * 109.47057 * 180.02562 * 1 2 3
34 34 H 1.09003 * 109.46898 * 299.99921 * 1 2 3
35 35 H 1.09003 * 109.46898 * 240.00079 * 2 1 3
36 36 H 1.08997 * 109.47216 * 120.00275 * 2 1 3
37 37 H 1.08999 * 109.46925 * 60.00677 * 3 2 1
38 38 H 1.08997 * 109.47251 * 300.00253 * 3 2 1
39 39 H 1.08999 * 109.46477 * 305.84982 * 5 4 3
40 40 H 1.08993 * 109.46358 * 65.83165 * 5 4 3
41 41 H 1.09007 * 109.50381 * 60.76465 * 6 5 4
42 42 H 1.08998 * 109.50106 * 180.83718 * 6 5 4
43 43 H 1.09006 * 109.51683 * 297.74606 * 7 6 5
44 44 H 1.08992 * 109.52116 * 177.56227 * 7 6 5
45 45 H 0.96999 * 120.00094 * 0.28080 * 12 10 8
46 46 H 1.08999 * 110.62471 * 236.97809 * 15 13 12
47 47 H 1.08996 * 110.62910 * 0.02562 * 15 13 12
48 48 H 1.09004 * 110.62096 * 313.33655 * 18 16 15
49 49 H 1.08989 * 110.62924 * 190.31529 * 18 16 15
50 50 H 1.08999 * 110.62782 * 241.51413 * 19 18 16
51 51 H 1.09005 * 110.62244 * 118.49494 * 19 18 16
52 52 H 0.97008 * 119.99861 * 179.97438 * 26 25 23
53 53 H 1.08999 * 109.46643 * 54.13744 * 31 4 3
54 54 H 1.09007 * 109.45745 * 294.17319 * 31 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 7 3.5091 1.4424 -0.0006
5 6 4.0349 0.4866 -0.9837
6 6 5.5578 0.4070 -0.8557
7 6 6.1584 1.7953 -1.0938
8 6 5.5582 2.7818 -0.0884
9 1 5.8219 2.4760 0.9241
10 6 6.0998 4.1628 -0.3540
11 8 5.3425 5.0672 -0.6358
12 7 7.4251 4.3940 -0.2728
13 6 7.9510 5.7379 -0.5251
14 1 7.2710 6.4947 -0.1338
15 6 9.3623 5.8961 0.0921
16 6 10.2674 6.1870 -1.1429
17 1 11.2212 6.6671 -0.9244
18 6 10.3562 4.8322 -1.9081
19 6 8.9448 4.6739 -2.5252
20 6 8.1954 5.9547 -2.0489
21 1 7.3164 6.2293 -2.6319
22 7 9.3186 6.9520 -2.0214
23 6 9.4404 8.1803 -2.6147
24 1 8.6360 8.5688 -3.2216
25 6 10.5976 8.9257 -2.4360
26 7 11.5781 8.4518 -1.6967
27 14 10.7641 10.6008 -3.2459
28 1 10.2451 11.6475 -2.3292
29 1 12.1945 10.8672 -3.5425
30 1 9.9847 10.6190 -4.5099
31 6 4.0353 2.7926 -0.2386
32 1 -0.3633 0.5139 -0.8899
33 1 -0.3633 -1.0276 0.0005
34 1 -0.3633 0.5138 0.8900
35 1 1.8934 -0.5138 -0.8900
36 1 1.8934 -0.5139 0.8899
37 1 1.6769 1.9563 0.8900
38 1 1.6768 1.9564 -0.8899
39 1 3.6031 -0.4973 -0.8005
40 1 3.7718 0.8173 -1.9884
41 1 5.8215 0.0632 0.1445
42 1 5.9491 -0.2913 -1.5955
43 1 5.9279 2.1228 -2.1076
44 1 7.2394 1.7521 -0.9610
45 1 8.0307 3.6706 -0.0474
46 1 9.3845 6.7331 0.7900
47 1 9.6712 4.9746 0.5855
48 1 10.5675 4.0149 -1.2184
49 1 11.1139 4.8818 -2.6900
50 1 8.4562 3.7782 -2.1416
51 1 9.0026 4.6450 -3.6133
52 1 12.3870 8.9726 -1.5721
53 1 3.6038 3.4835 0.4856
54 1 3.7721 3.1123 -1.2469
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001095902593.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:23:13
Heat of formation + Delta-G solvation = -16.810463 kcal
Electronic energy + Delta-G solvation = -30497.011470 eV
Core-core repulsion = 26661.494969 eV
Total energy + Delta-G solvation = -3835.516501 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-41.68799 -40.50471 -39.19620 -35.94896 -35.44224 -34.21000 -32.80593 -32.06898
-31.00712 -30.66033 -29.14929 -27.20604 -26.27853 -25.24600 -23.91394 -22.90798
-22.45742 -21.53819 -20.98422 -20.56972 -20.12311 -18.94377 -18.15118 -17.22173
-16.83430 -16.62102 -16.36651 -16.23492 -16.01055 -15.70687 -15.48474 -15.11562
-14.80402 -14.71091 -14.31996 -14.06460 -13.87767 -13.63107 -13.45240 -13.42312
-13.21504 -12.94404 -12.89161 -12.79329 -12.66809 -12.60608 -12.36572 -12.36045
-12.05125 -12.00786 -11.91312 -11.83460 -11.58451 -11.54927 -11.40171 -11.24885
-11.17427 -11.04466 -10.78578 -10.60562 -9.96629 -9.31358 -8.86339 -7.80954
-5.19894 1.44609 1.46013 1.54078 1.68989 2.15464 2.48867 2.96617
3.32418 3.50909 3.63533 3.77222 3.88501 3.95795 4.03915 4.09516
4.13867 4.14650 4.25444 4.27241 4.39033 4.42201 4.44095 4.48447
4.57859 4.61306 4.64698 4.71621 4.73939 4.78490 4.81679 4.82868
4.88749 4.97438 5.00051 5.00275 5.06373 5.14971 5.15240 5.17620
5.24088 5.26410 5.30000 5.32975 5.40202 5.45040 5.46672 5.55778
5.76574 5.89414 6.05786 6.14959 6.25842 6.66748 7.04904 7.35594
7.67828 8.54244 9.25985
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.026197 B = 0.002373 C = 0.002281
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1068.552512 B =11796.264752 C =12273.795985
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.120 4.120
3 C 0.052 3.948
4 N -0.537 5.537
5 C 0.042 3.958
6 C -0.108 4.108
7 C -0.111 4.111
8 C -0.089 4.089
9 H 0.124 0.876
10 C 0.513 3.487
11 O -0.592 6.592
12 N -0.695 5.695
13 C 0.147 3.853
14 H 0.048 0.952
15 C -0.126 4.126
16 C 0.140 3.860
17 H 0.119 0.881
18 C -0.125 4.125
19 C -0.115 4.115
20 C 0.118 3.882
21 H 0.061 0.939
22 N -0.619 5.619
23 C -0.225 4.225
24 H 0.068 0.932
25 C -0.064 4.064
26 N -0.942 5.942
27 Si 0.976 3.024
28 H -0.289 1.289
29 H -0.290 1.290
30 H -0.277 1.277
31 C 0.082 3.918
32 H 0.049 0.951
33 H 0.066 0.934
34 H 0.055 0.945
35 H 0.070 0.930
36 H 0.074 0.926
37 H 0.073 0.927
38 H 0.022 0.978
39 H 0.099 0.901
40 H 0.022 0.978
41 H 0.084 0.916
42 H 0.088 0.912
43 H 0.051 0.949
44 H 0.091 0.909
45 H 0.414 0.586
46 H 0.044 0.956
47 H 0.099 0.901
48 H 0.090 0.910
49 H 0.034 0.966
50 H 0.089 0.911
51 H 0.039 0.961
52 H 0.249 0.751
53 H 0.065 0.935
54 H 0.018 0.982
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.628 -23.462 5.639 27.713
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.158 4.158
3 C -0.075 4.075
4 N -0.262 5.262
5 C -0.086 4.086
6 C -0.146 4.146
7 C -0.149 4.149
8 C -0.111 4.111
9 H 0.142 0.858
10 C 0.300 3.700
11 O -0.472 6.472
12 N -0.347 5.347
13 C 0.039 3.961
14 H 0.066 0.934
15 C -0.165 4.165
16 C 0.034 3.966
17 H 0.136 0.864
18 C -0.164 4.164
19 C -0.154 4.154
20 C 0.010 3.990
21 H 0.079 0.921
22 N -0.341 5.341
23 C -0.354 4.354
24 H 0.086 0.914
25 C -0.257 4.257
26 N -0.592 5.592
27 Si 0.805 3.195
28 H -0.217 1.217
29 H -0.216 1.216
30 H -0.203 1.203
31 C -0.047 4.047
32 H 0.069 0.931
33 H 0.085 0.915
34 H 0.074 0.926
35 H 0.088 0.912
36 H 0.093 0.907
37 H 0.091 0.909
38 H 0.041 0.959
39 H 0.117 0.883
40 H 0.040 0.960
41 H 0.102 0.898
42 H 0.107 0.893
43 H 0.069 0.931
44 H 0.110 0.890
45 H 0.252 0.748
46 H 0.063 0.937
47 H 0.117 0.883
48 H 0.108 0.892
49 H 0.053 0.947
50 H 0.108 0.892
51 H 0.058 0.942
52 H 0.059 0.941
53 H 0.083 0.917
54 H 0.036 0.964
Dipole moment (debyes) X Y Z Total
from point charges -13.850 -22.697 5.820 27.219
hybrid contribution -0.008 1.849 -1.350 2.289
sum -13.858 -20.849 4.469 25.430
Atomic orbital electron populations
1.21735 0.94936 1.02384 1.01806 1.21647 0.96225 0.94993 1.02939
1.22218 0.86484 0.98392 1.00426 1.62027 1.07827 1.06177 1.50150
1.22383 0.96466 0.97192 0.92536 1.21581 0.93478 0.95703 1.03838
1.21624 1.01392 0.94681 0.97225 1.21257 0.95537 0.90560 1.03731
0.85800 1.21189 0.82157 0.91061 0.75545 1.90690 1.58608 1.47936
1.49965 1.45962 1.07301 1.11416 1.69988 1.22047 0.94524 0.83411
0.96085 0.93391 1.23129 0.93907 1.01240 0.98266 1.23633 0.95349
0.89459 0.88155 0.86350 1.22946 0.95764 0.98291 0.99396 1.22809
0.96251 0.97401 0.98927 1.23289 0.90702 0.90185 0.94818 0.92105
1.46725 1.15019 1.15823 1.56485 1.19273 1.00491 0.92641 1.23011
0.91364 1.25418 0.96365 1.02072 1.01828 1.69690 1.06965 1.38353
1.44176 0.85113 0.76568 0.79866 0.77986 1.21656 1.21599 1.20251
1.21649 0.93644 0.90190 0.99190 0.93145 0.91496 0.92556 0.91192
0.90734 0.90895 0.95924 0.88335 0.95991 0.89781 0.89329 0.93060
0.89005 0.74752 0.93665 0.88288 0.89180 0.94668 0.89245 0.94215
0.94114 0.91666 0.96355
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.55 9.91 71.98 0.71 -0.84 16
2 C -0.12 -1.41 5.18 30.60 0.16 -1.26 16
3 C 0.05 0.86 5.27 86.30 0.46 1.31 16
4 N -0.54 -9.53 4.81 -896.37 -4.31 -13.84 16
5 C 0.04 0.59 4.85 86.33 0.42 1.01 16
6 C -0.11 -1.27 6.09 30.65 0.19 -1.08 16
7 C -0.11 -1.72 5.16 30.67 0.16 -1.56 16
8 C -0.09 -1.79 2.69 -11.49 -0.03 -1.82 16
9 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16
10 C 0.51 14.73 7.15 87.66 0.63 15.36 16
11 O -0.59 -23.20 15.71 -3.03 -0.05 -23.25 16
12 N -0.69 -18.50 3.54 -434.92 -1.54 -20.04 16
13 C 0.15 5.41 3.08 46.61 0.14 5.56 16
14 H 0.05 2.10 7.70 -2.38 -0.02 2.08 16
15 C -0.13 -4.59 6.20 32.21 0.20 -4.39 16
16 C 0.14 6.25 4.69 46.23 0.22 6.47 16
17 H 0.12 6.19 5.57 -2.39 -0.01 6.18 16
18 C -0.12 -4.49 6.44 32.21 0.21 -4.28 16
19 C -0.11 -3.98 6.33 32.21 0.20 -3.77 16
20 C 0.12 5.03 5.35 46.23 0.25 5.28 16
21 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16
22 N -0.62 -31.74 2.99 -615.24 -1.84 -33.58 16
23 C -0.23 -12.95 10.59 84.03 0.89 -12.06 16
24 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16
25 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16
26 N -0.94 -55.01 10.48 21.65 0.23 -54.78 16
27 Si 0.98 46.74 29.55 68.60 2.03 48.76 16
28 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16
29 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16
30 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16
31 C 0.08 1.87 4.00 86.32 0.35 2.21 16
32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16
33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16
34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16
35 H 0.07 0.76 6.21 -2.39 -0.01 0.74 16
36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16
37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16
38 H 0.02 0.42 8.08 -2.39 -0.02 0.40 16
39 H 0.10 1.09 5.81 -2.39 -0.01 1.08 16
40 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16
41 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16
42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16
43 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16
44 H 0.09 1.08 7.67 -2.39 -0.02 1.06 16
45 H 0.41 7.88 7.51 -92.71 -0.70 7.18 16
46 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16
47 H 0.10 2.70 7.34 -2.39 -0.02 2.69 16
48 H 0.09 2.44 7.81 -2.38 -0.02 2.42 16
49 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16
50 H 0.09 2.40 6.48 -2.39 -0.02 2.39 16
51 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16
52 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16
53 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16
54 H 0.02 0.50 8.08 -2.38 -0.02 0.48 16
Total: -1.00 -70.73 403.36 0.30 -70.43
By element:
Atomic # 1 Polarization: 23.18 SS G_CDS: 0.17 Total: 23.35 kcal
Atomic # 6 Polarization: -2.67 SS G_CDS: 5.61 Total: 2.94 kcal
Atomic # 7 Polarization: -114.78 SS G_CDS: -7.46 Total: -122.24 kcal
Atomic # 8 Polarization: -23.20 SS G_CDS: -0.05 Total: -23.25 kcal
Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal
Total: -70.73 0.30 -70.43 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001095902593.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.622 kcal
(2) G-P(sol) polarization free energy of solvation -70.731 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.110 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.432 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.810 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds