Wall clock time and date at job start Tue Mar 31 2020 19:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47028 * 2 1 4 4 N 1.46903 * 109.46892 * 119.99916 * 2 1 3 5 5 C 1.46845 * 111.00103 * 294.84672 * 4 2 1 6 6 C 1.53038 * 109.52289 * 174.16420 * 5 4 2 7 7 C 1.53124 * 109.27927 * 59.17747 * 6 5 4 8 8 C 1.53124 * 109.15961 * 302.34655 * 7 6 5 9 9 C 1.46847 * 110.99410 * 170.63414 * 4 2 1 10 10 H 1.08992 * 109.46670 * 65.83842 * 9 4 2 11 11 C 1.50703 * 109.46580 * 305.85297 * 9 4 2 12 12 O 1.21279 * 119.99670 * 330.97060 * 11 9 4 13 13 N 1.34774 * 119.99882 * 150.96289 * 11 9 4 14 14 C 1.46502 * 119.99968 * 180.02562 * 13 11 9 15 15 H 1.08996 * 110.55471 * 36.64531 * 14 13 11 16 16 C 1.56685 * 110.48873 * 159.60611 * 14 13 11 17 17 C 1.55849 * 102.59531 * 118.85090 * 16 14 13 18 18 H 1.08999 * 115.55783 * 159.08246 * 17 16 14 19 19 C 1.55838 * 105.06376 * 287.69721 * 17 16 14 20 20 C 1.54852 * 103.44692 * 72.57625 * 19 17 16 21 21 C 1.55841 * 110.62715 * 273.74558 * 14 13 11 22 22 H 1.09001 * 116.12564 * 82.20368 * 21 14 13 23 23 N 1.50235 * 101.75358 * 32.69409 * 17 16 14 24 24 C 1.36936 * 130.84273 * 125.84162 * 23 17 16 25 25 H 1.08001 * 120.00327 * 180.02562 * 24 23 17 26 26 C 1.38811 * 119.99725 * 0.02562 * 24 23 17 27 27 N 1.31619 * 119.99950 * 0.02562 * 26 24 23 28 28 Si 1.86806 * 120.00014 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.46819 * 60.00291 * 28 26 24 30 30 H 1.48501 * 109.46947 * 180.02562 * 28 26 24 31 31 H 1.48500 * 109.47000 * 300.00192 * 28 26 24 32 32 H 1.08999 * 109.46965 * 300.00031 * 1 2 3 33 33 H 1.08993 * 109.47135 * 59.99870 * 1 2 3 34 34 H 1.08999 * 109.46667 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.46965 * 239.99969 * 2 1 3 36 36 H 1.08994 * 109.46765 * 180.02562 * 3 2 1 37 37 H 1.08993 * 109.46744 * 300.00051 * 3 2 1 38 38 H 1.09001 * 109.46539 * 60.00252 * 3 2 1 39 39 H 1.09008 * 109.45917 * 294.17761 * 5 4 2 40 40 H 1.08996 * 109.46593 * 54.15403 * 5 4 2 41 41 H 1.08997 * 109.50537 * 179.11550 * 6 5 4 42 42 H 1.09002 * 109.50138 * 299.23895 * 6 5 4 43 43 H 1.08998 * 109.52216 * 62.25092 * 7 6 5 44 44 H 1.09003 * 109.52265 * 182.38192 * 7 6 5 45 45 H 1.09002 * 109.50069 * 297.71625 * 8 7 6 46 46 H 1.09000 * 109.50392 * 177.59970 * 8 7 6 47 47 H 0.97000 * 119.99856 * 0.02562 * 13 11 9 48 48 H 1.08995 * 110.79081 * 0.75375 * 16 14 13 49 49 H 1.08998 * 111.26367 * 237.16090 * 16 14 13 50 50 H 1.09003 * 110.62896 * 191.07049 * 19 17 16 51 51 H 1.09003 * 110.62957 * 314.08989 * 19 17 16 52 52 H 1.09001 * 110.62813 * 118.48743 * 20 19 17 53 53 H 1.09002 * 110.63015 * 241.35286 * 20 19 17 54 54 H 0.97002 * 119.99964 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.6520 0.0408 2.4175 6 6 2.0487 -0.7790 3.6474 7 6 3.5581 -1.0347 3.6192 8 6 3.9214 -1.7564 2.3185 9 6 3.4704 -0.9083 1.1271 10 1 3.9824 0.0536 1.1518 11 6 3.8082 -1.6242 -0.1553 12 8 2.9997 -2.3717 -0.6636 13 7 5.0088 -1.4335 -0.7374 14 6 5.3370 -2.1289 -1.9843 15 1 4.4575 -2.2036 -2.6238 16 6 6.5048 -1.3969 -2.7296 17 6 7.6159 -2.4888 -2.7756 18 1 8.3814 -2.3488 -3.5388 19 6 8.1379 -2.5974 -1.3113 20 6 6.9836 -3.3153 -0.5698 21 6 5.9212 -3.5428 -1.6871 22 1 5.1943 -4.3311 -1.4914 23 7 6.8034 -3.7477 -2.8858 24 6 6.8520 -4.7679 -3.7980 25 1 6.1736 -5.6036 -3.7101 26 6 7.7731 -4.7278 -4.8356 27 7 8.6002 -3.7095 -4.9425 28 14 7.8398 -6.1198 -6.0796 29 1 6.5287 -6.2318 -6.7679 30 1 8.9019 -5.8399 -7.0791 31 1 8.1423 -7.3945 -5.3803 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3632 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8899 38 1 1.6767 1.9562 0.8900 39 1 2.1725 0.9984 2.4359 40 1 0.5757 0.2123 2.4272 41 1 1.7899 -0.2276 4.5512 42 1 1.5180 -1.7311 3.6367 43 1 4.0895 -0.0844 3.6691 44 1 3.8386 -1.6542 4.4711 45 1 3.4201 -2.7239 2.2869 46 1 5.0005 -1.9034 2.2729 47 1 5.6555 -0.8358 -0.3307 48 1 6.8421 -0.5295 -2.1623 49 1 6.2097 -1.1066 -3.7379 50 1 9.0494 -3.1938 -1.2718 51 1 8.3076 -1.6066 -0.8896 52 1 7.3225 -4.2679 -0.1626 53 1 6.5826 -2.6818 0.2214 54 1 9.2441 -3.6817 -5.6674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096103266.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:40 Heat of formation + Delta-G solvation = -6.740333 kcal Electronic energy + Delta-G solvation = -31562.004609 eV Core-core repulsion = 27726.924781 eV Total energy + Delta-G solvation = -3835.079828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.79677 -40.67547 -38.90405 -36.09910 -35.37729 -34.20808 -32.33130 -31.17243 -31.00744 -30.60665 -29.14240 -28.12513 -26.32426 -25.43468 -24.76656 -22.88532 -21.95580 -21.52395 -21.16454 -20.27686 -19.97712 -18.91093 -18.12979 -17.38384 -16.84413 -16.57936 -16.44976 -16.02178 -15.79290 -15.47927 -15.29871 -15.11453 -14.59717 -14.55755 -14.36488 -14.08476 -13.88703 -13.71091 -13.48339 -13.38450 -13.20862 -12.92253 -12.84601 -12.79669 -12.67170 -12.61304 -12.38723 -12.36434 -12.06617 -12.02253 -11.97330 -11.88223 -11.58957 -11.55186 -11.47367 -11.16076 -11.13672 -11.03945 -10.78288 -10.50440 -9.95748 -9.14695 -8.86303 -7.80339 -5.19764 1.45027 1.47418 1.53492 1.69296 2.12252 2.49370 2.93204 3.32709 3.49952 3.70926 3.86193 3.88571 3.94402 4.06365 4.10772 4.13166 4.16213 4.20457 4.32619 4.34648 4.38685 4.40494 4.47791 4.58739 4.61566 4.69244 4.71948 4.75722 4.80727 4.82829 4.83484 4.94205 4.96549 5.00646 5.06549 5.07853 5.13634 5.15292 5.22528 5.24224 5.27530 5.30407 5.33105 5.39274 5.45800 5.52497 5.55534 5.75764 5.88482 6.07958 6.24690 6.27385 6.70592 7.04981 7.39073 7.68276 8.54532 9.26130 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.003022 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.502715 B = 9263.348403 C = 9718.450115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.066 3.934 3 C -0.179 4.179 4 N -0.527 5.527 5 C 0.051 3.949 6 C -0.118 4.118 7 C -0.112 4.112 8 C -0.106 4.106 9 C 0.080 3.920 10 H 0.080 0.920 11 C 0.512 3.488 12 O -0.570 6.570 13 N -0.699 5.699 14 C 0.150 3.850 15 H 0.046 0.954 16 C -0.124 4.124 17 C 0.137 3.863 18 H 0.120 0.880 19 C -0.125 4.125 20 C -0.114 4.114 21 C 0.120 3.880 22 H 0.061 0.939 23 N -0.618 5.618 24 C -0.227 4.227 25 H 0.069 0.931 26 C -0.061 4.061 27 N -0.943 5.943 28 Si 0.975 3.025 29 H -0.284 1.284 30 H -0.289 1.289 31 H -0.282 1.282 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.412 0.588 48 H 0.098 0.902 49 H 0.045 0.955 50 H 0.034 0.966 51 H 0.088 0.912 52 H 0.040 0.960 53 H 0.087 0.913 54 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.875 14.757 19.302 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.042 4.042 3 C -0.238 4.238 4 N -0.253 5.253 5 C -0.075 4.075 6 C -0.155 4.155 7 C -0.150 4.150 8 C -0.145 4.145 9 C -0.032 4.032 10 H 0.098 0.902 11 C 0.299 3.701 12 O -0.448 6.448 13 N -0.352 5.352 14 C 0.043 3.957 15 H 0.065 0.935 16 C -0.163 4.163 17 C 0.031 3.969 18 H 0.137 0.863 19 C -0.164 4.164 20 C -0.154 4.154 21 C 0.012 3.988 22 H 0.079 0.921 23 N -0.340 5.340 24 C -0.356 4.356 25 H 0.087 0.913 26 C -0.254 4.254 27 N -0.592 5.592 28 Si 0.804 3.196 29 H -0.210 1.210 30 H -0.215 1.215 31 H -0.208 1.208 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.071 0.929 46 H 0.101 0.899 47 H 0.249 0.751 48 H 0.116 0.884 49 H 0.064 0.936 50 H 0.053 0.947 51 H 0.107 0.893 52 H 0.059 0.941 53 H 0.106 0.894 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.566 13.602 18.693 25.418 hybrid contribution 0.675 -0.360 -1.302 1.510 sum -9.891 13.241 17.391 23.992 Atomic orbital electron populations 1.21742 0.93413 1.01612 1.02356 1.21764 0.96836 0.92801 0.92795 1.22424 1.01162 0.96912 1.03289 1.61873 1.10785 1.49761 1.02854 1.22279 1.01533 0.95274 0.88458 1.21634 0.96114 1.00506 0.97285 1.21557 0.96314 1.01043 0.96074 1.21565 1.01346 0.98429 0.93139 1.21573 0.90583 0.98773 0.92241 0.90199 1.21062 0.81162 0.81772 0.86116 1.90693 1.49740 1.38883 1.65462 1.46021 1.16781 1.47374 1.25056 1.22349 0.96166 0.92540 0.84666 0.93544 1.23416 0.95847 0.98262 0.98810 1.23653 0.93775 0.83604 0.95859 0.86298 1.22946 0.96734 0.99813 0.96889 1.22798 0.96023 0.99587 0.96964 1.23280 0.92582 0.94376 0.88594 0.92106 1.46711 1.38483 1.21179 1.27651 1.19252 1.14618 0.98172 1.03596 0.91344 1.25395 0.98639 1.00681 1.00704 1.69660 1.24089 1.31659 1.33825 0.85200 0.76930 0.78854 0.78632 1.21047 1.21468 1.20809 0.90968 0.91830 0.93684 0.92671 0.92891 0.91818 0.90565 0.93185 0.89713 0.89309 0.92537 0.90426 0.90376 0.92877 0.89905 0.75097 0.88410 0.93585 0.94656 0.89339 0.94150 0.89421 0.94089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.11 71.98 0.66 -1.97 16 2 C 0.07 1.49 2.56 44.92 0.11 1.60 16 3 C -0.18 -2.99 8.46 71.98 0.61 -2.39 16 4 N -0.53 -11.38 4.21 -850.37 -3.58 -14.96 16 5 C 0.05 0.76 4.56 86.33 0.39 1.15 16 6 C -0.12 -1.52 6.09 30.65 0.19 -1.34 16 7 C -0.11 -1.41 6.00 30.68 0.18 -1.22 16 8 C -0.11 -1.96 5.36 30.65 0.16 -1.80 16 9 C 0.08 1.68 1.89 44.19 0.08 1.76 16 10 H 0.08 1.31 6.85 -2.39 -0.02 1.29 16 11 C 0.51 15.14 5.79 87.66 0.51 15.64 16 12 O -0.57 -22.83 15.00 -3.03 -0.05 -22.87 16 13 N -0.70 -19.16 3.66 -431.87 -1.58 -20.74 16 14 C 0.15 5.60 3.12 47.26 0.15 5.75 16 15 H 0.05 2.06 7.69 -2.39 -0.02 2.04 16 16 C -0.12 -4.55 6.34 32.87 0.21 -4.34 16 17 C 0.14 6.17 4.67 46.23 0.22 6.38 16 18 H 0.12 6.27 5.52 -2.39 -0.01 6.25 16 19 C -0.12 -4.54 6.44 32.21 0.21 -4.33 16 20 C -0.11 -4.03 6.32 32.21 0.20 -3.82 16 21 C 0.12 5.14 5.35 46.22 0.25 5.39 16 22 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 23 N -0.62 -31.91 2.99 -615.25 -1.84 -33.75 16 24 C -0.23 -13.14 10.59 84.03 0.89 -12.25 16 25 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 26 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 27 N -0.94 -55.13 10.46 21.65 0.23 -54.90 16 28 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 29 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 30 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 31 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 32 H 0.07 1.10 6.41 -2.39 -0.02 1.09 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.69 5.76 -2.39 -0.01 1.68 16 36 H 0.05 0.88 6.79 -2.39 -0.02 0.87 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.00 6.47 -2.39 -0.02 0.98 16 39 H 0.05 0.61 6.58 -2.38 -0.02 0.60 16 40 H 0.08 1.17 6.19 -2.39 -0.01 1.15 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.41 8.25 8.03 -92.71 -0.74 7.51 16 48 H 0.10 2.71 7.35 -2.39 -0.02 2.69 16 49 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.09 2.45 7.79 -2.39 -0.02 2.43 16 52 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 53 H 0.09 2.42 6.49 -2.39 -0.02 2.40 16 54 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -71.44 395.22 0.83 -70.61 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.14 Total: 26.65 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 5.49 Total: 1.19 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -6.77 Total: -124.35 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -71.44 0.83 -70.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096103266.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.867 kcal (2) G-P(sol) polarization free energy of solvation -71.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds