Wall clock time and date at job start Tue Mar 31 2020 19:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.46955 * 2 1 4 4 N 1.46896 * 109.47030 * 119.99969 * 2 1 3 5 5 C 1.46851 * 110.99862 * 175.00103 * 4 2 1 6 6 C 1.53037 * 109.52202 * 185.84061 * 5 4 2 7 7 C 1.53120 * 109.28016 * 300.81885 * 6 5 4 8 8 C 1.50700 * 109.52523 * 177.56015 * 7 6 5 9 9 O 1.21273 * 119.99869 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99889 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99576 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.56467 * 32.88131 * 11 10 8 13 13 C 1.54856 * 110.62729 * 155.78264 * 11 10 8 14 14 C 1.55839 * 103.44979 * 118.48459 * 13 11 10 15 15 H 1.09000 * 115.56579 * 159.56314 * 14 13 11 16 16 C 1.55840 * 105.06639 * 288.18045 * 14 13 11 17 17 C 1.54852 * 103.45059 * 71.82263 * 16 14 13 18 18 C 1.55845 * 110.62625 * 269.97859 * 11 10 8 19 19 H 1.08998 * 115.56711 * 81.94874 * 18 11 10 20 20 N 1.50245 * 101.04906 * 32.93988 * 14 13 11 21 21 C 1.36940 * 130.83841 * 126.02693 * 20 14 13 22 22 H 1.08002 * 120.00048 * 180.02562 * 21 20 14 23 23 C 1.38813 * 119.99987 * 0.02562 * 21 20 14 24 24 N 1.31618 * 119.99972 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99872 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47273 * 60.00085 * 25 23 21 27 27 H 1.48499 * 109.46858 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46938 * 300.00135 * 25 23 21 29 29 C 1.53118 * 109.16041 * 57.65611 * 7 6 5 30 30 C 1.46844 * 111.00257 * 299.21100 * 4 2 1 31 31 H 1.08995 * 109.47019 * 299.99585 * 1 2 3 32 32 H 1.08998 * 109.47007 * 60.00401 * 1 2 3 33 33 H 1.09001 * 109.46869 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47235 * 239.99927 * 2 1 3 35 35 H 1.09002 * 109.46927 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.47109 * 300.00069 * 3 2 1 37 37 H 1.08997 * 109.47209 * 59.99911 * 3 2 1 38 38 H 1.08995 * 109.46152 * 65.82598 * 5 4 2 39 39 H 1.09002 * 109.45949 * 305.85649 * 5 4 2 40 40 H 1.09002 * 109.50367 * 180.88258 * 6 5 4 41 41 H 1.09005 * 109.50751 * 60.76058 * 6 5 4 42 42 H 1.09000 * 109.52339 * 297.68924 * 7 6 5 43 43 H 0.97001 * 119.99640 * 359.72787 * 10 8 7 44 44 H 1.09002 * 110.62591 * 236.98017 * 13 11 10 45 45 H 1.09006 * 110.62208 * 359.97438 * 13 11 10 46 46 H 1.09006 * 110.62610 * 190.31245 * 16 14 13 47 47 H 1.09003 * 110.62735 * 313.32916 * 16 14 13 48 48 H 1.09003 * 110.63047 * 118.48910 * 17 16 14 49 49 H 1.08999 * 110.62909 * 241.35926 * 17 16 14 50 50 H 0.96996 * 120.00131 * 180.02562 * 24 23 21 51 51 H 1.09003 * 109.50880 * 62.28458 * 29 7 6 52 52 H 1.08996 * 109.50599 * 182.40807 * 29 7 6 53 53 H 1.08998 * 109.46178 * 294.17978 * 30 4 2 54 54 H 1.08997 * 109.46215 * 54.14409 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4828 -0.8164 1.1751 6 6 3.9438 -1.6664 2.3613 7 6 3.4907 -1.0031 3.6649 8 6 3.8897 -1.8661 4.8342 9 8 4.4789 -2.9090 4.6449 10 7 3.5916 -1.4788 6.0903 11 6 3.9799 -2.3174 7.2269 12 1 4.9153 -2.8364 7.0179 13 6 4.1040 -1.4670 8.5151 14 6 3.0316 -2.0849 9.4620 15 1 3.1696 -1.8831 10.5242 16 6 1.6614 -1.6421 8.8660 17 6 1.5372 -2.4926 7.5779 18 6 2.8512 -3.3364 7.5682 19 1 2.8313 -4.2386 6.9568 20 7 3.0749 -3.5273 9.0437 21 6 3.2623 -4.6676 9.7785 22 1 3.2616 -5.6309 9.2902 23 6 3.4531 -4.5853 11.1510 24 7 3.4534 -3.4114 11.7462 25 14 3.7080 -6.1408 12.1534 26 1 4.9168 -6.8518 11.6651 27 1 3.8869 -5.7841 13.5838 28 1 2.5223 -7.0230 12.0083 29 6 1.9682 -0.8419 3.6440 30 6 1.5644 -0.0158 2.4205 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 3.1301 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8899 37 1 1.6767 1.9564 0.8899 38 1 3.9323 0.1743 1.2418 39 1 3.7914 -1.2933 0.2448 40 1 5.0310 -1.7451 2.3519 41 1 3.5056 -2.6617 2.2880 42 1 3.9604 -0.0239 3.7578 43 1 3.1237 -0.6427 6.2418 44 1 5.1001 -1.5664 8.9463 45 1 3.8769 -0.4212 8.3080 46 1 0.8501 -1.8711 9.5570 47 1 1.6731 -0.5792 8.6247 48 1 0.6644 -3.1434 7.6300 49 1 1.4848 -1.8514 6.6980 50 1 3.5872 -3.3538 12.7051 51 1 1.4988 -1.8242 3.5907 52 1 1.6438 -0.3316 4.5508 53 1 2.0229 0.9712 2.4813 54 1 0.4797 0.0888 2.3948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096268013.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:45 Heat of formation + Delta-G solvation = -12.899515 kcal Electronic energy + Delta-G solvation = -30753.929036 eV Core-core repulsion = 26918.582126 eV Total energy + Delta-G solvation = -3835.346910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.65597 -40.57025 -39.42424 -35.87802 -35.45008 -34.18750 -32.02512 -31.35063 -30.99159 -30.61028 -29.15644 -28.03866 -26.43965 -25.64491 -24.08451 -22.95051 -22.35461 -21.47335 -20.92315 -20.18937 -20.03909 -18.93349 -18.14669 -17.20849 -16.81855 -16.60580 -16.43185 -16.01710 -15.84100 -15.62467 -15.36288 -15.10209 -14.81523 -14.52456 -14.20465 -14.04886 -13.84042 -13.59593 -13.46959 -13.24040 -13.07311 -12.90926 -12.81144 -12.78479 -12.76227 -12.56825 -12.37315 -12.30681 -12.14474 -12.01809 -11.92452 -11.88709 -11.63183 -11.57164 -11.49284 -11.22556 -11.13678 -11.02818 -10.76378 -10.58362 -9.94646 -9.10466 -8.85227 -7.80005 -5.18840 1.45251 1.47643 1.53703 1.72715 2.24859 2.50927 2.99565 3.33260 3.50040 3.66565 3.80851 3.87797 3.97885 4.04100 4.13622 4.14564 4.22927 4.31305 4.35702 4.41986 4.44682 4.45994 4.49259 4.56384 4.61868 4.69834 4.72202 4.77965 4.82263 4.82974 4.86549 4.93840 4.97100 4.98106 5.07295 5.08148 5.11215 5.15723 5.22010 5.25934 5.27628 5.34023 5.36259 5.40991 5.47097 5.48893 5.56953 5.77946 5.90114 6.25769 6.26374 6.29379 6.69740 7.05690 7.39221 7.68730 8.55101 9.26828 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.002448 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.688096 B =11435.865218 C =11669.726997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 C -0.183 4.183 4 N -0.547 5.547 5 C 0.063 3.937 6 C -0.093 4.093 7 C -0.095 4.095 8 C 0.511 3.489 9 O -0.591 6.591 10 N -0.697 5.697 11 C 0.146 3.854 12 H 0.048 0.952 13 C -0.126 4.126 14 C 0.141 3.859 15 H 0.118 0.882 16 C -0.125 4.125 17 C -0.114 4.114 18 C 0.117 3.883 19 H 0.063 0.937 20 N -0.618 5.618 21 C -0.227 4.227 22 H 0.069 0.931 23 C -0.063 4.063 24 N -0.943 5.943 25 Si 0.975 3.025 26 H -0.284 1.284 27 H -0.289 1.289 28 H -0.282 1.282 29 C -0.104 4.104 30 C 0.056 3.944 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.117 0.883 43 H 0.413 0.587 44 H 0.043 0.957 45 H 0.097 0.903 46 H 0.034 0.966 47 H 0.089 0.911 48 H 0.040 0.960 49 H 0.090 0.910 50 H 0.249 0.751 51 H 0.057 0.943 52 H 0.092 0.908 53 H 0.051 0.949 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.173 15.834 -22.759 28.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 C -0.241 4.241 4 N -0.272 5.272 5 C -0.064 4.064 6 C -0.132 4.132 7 C -0.116 4.116 8 C 0.299 3.701 9 O -0.471 6.471 10 N -0.349 5.349 11 C 0.038 3.962 12 H 0.066 0.934 13 C -0.166 4.166 14 C 0.035 3.965 15 H 0.136 0.864 16 C -0.164 4.164 17 C -0.153 4.153 18 C 0.009 3.991 19 H 0.081 0.919 20 N -0.340 5.340 21 C -0.356 4.356 22 H 0.087 0.913 23 C -0.256 4.256 24 N -0.593 5.593 25 Si 0.804 3.196 26 H -0.211 1.211 27 H -0.215 1.215 28 H -0.208 1.208 29 C -0.142 4.142 30 C -0.072 4.072 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.135 0.865 43 H 0.251 0.749 44 H 0.062 0.938 45 H 0.116 0.884 46 H 0.053 0.947 47 H 0.108 0.892 48 H 0.058 0.942 49 H 0.108 0.892 50 H 0.059 0.941 51 H 0.075 0.925 52 H 0.111 0.889 53 H 0.069 0.931 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.911 14.455 -22.607 27.279 hybrid contribution 0.617 -0.403 1.000 1.242 sum -4.295 14.052 -21.607 26.130 Atomic orbital electron populations 1.21862 0.93832 1.02047 1.02341 1.21730 0.96147 0.92781 0.92663 1.22436 1.01322 0.97492 1.02883 1.62145 1.10644 1.51899 1.02544 1.22022 0.87597 0.98711 0.98109 1.21332 1.00346 0.98996 0.92499 1.21382 0.98935 0.99535 0.91785 1.21311 0.77648 0.86185 0.84922 1.90683 1.43478 1.26993 1.85949 1.45995 1.59081 1.24960 1.04861 1.22038 0.96855 0.91896 0.85367 0.93365 1.23132 0.99911 0.98880 0.94661 1.23612 0.92106 0.81553 0.99232 0.86435 1.22945 0.98151 0.99104 0.96215 1.22851 0.96240 0.98140 0.98094 1.23406 0.95223 0.95149 0.85302 0.91887 1.46761 1.82793 1.02713 1.01753 1.19259 1.40741 0.85673 0.89920 0.91325 1.25404 1.03352 0.99723 0.97095 1.69680 1.57780 1.22834 1.08979 0.85195 0.77839 0.79020 0.77527 1.21077 1.21520 1.20820 1.21598 0.91879 1.01410 0.99314 1.22146 1.01349 0.95321 0.88369 0.92170 0.91223 0.92874 0.90252 0.92709 0.91347 0.92104 0.93378 0.90367 0.91797 0.92974 0.86502 0.74871 0.93833 0.88434 0.94659 0.89230 0.94154 0.89211 0.94117 0.92461 0.88936 0.93106 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.99 71.99 0.65 -0.87 16 2 C 0.07 0.88 2.96 44.92 0.13 1.01 16 3 C -0.18 -1.70 8.50 71.98 0.61 -1.09 16 4 N -0.55 -8.20 4.64 -871.10 -4.04 -12.24 16 5 C 0.06 0.97 5.02 86.32 0.43 1.41 16 6 C -0.09 -1.95 4.68 30.65 0.14 -1.80 16 7 C -0.10 -1.81 2.59 -11.46 -0.03 -1.84 16 8 C 0.51 14.60 7.15 87.66 0.63 15.23 16 9 O -0.59 -23.22 15.64 -3.01 -0.05 -23.26 16 10 N -0.70 -18.58 3.61 -434.92 -1.57 -20.15 16 11 C 0.15 5.41 3.13 46.61 0.15 5.55 16 12 H 0.05 2.13 7.57 -2.39 -0.02 2.11 16 13 C -0.13 -4.64 6.20 32.21 0.20 -4.44 16 14 C 0.14 6.31 4.69 46.22 0.22 6.53 16 15 H 0.12 6.17 5.57 -2.39 -0.01 6.16 16 16 C -0.12 -4.50 6.44 32.21 0.21 -4.29 16 17 C -0.11 -3.95 6.31 32.32 0.20 -3.74 16 18 C 0.12 4.99 5.39 46.30 0.25 5.24 16 19 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 20 N -0.62 -31.75 2.98 -614.13 -1.83 -33.59 16 21 C -0.23 -13.08 10.58 84.03 0.89 -12.19 16 22 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 23 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 24 N -0.94 -55.18 10.48 21.65 0.23 -54.96 16 25 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 26 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 28 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 29 C -0.10 -1.64 5.26 30.65 0.16 -1.48 16 30 C 0.06 0.71 4.63 86.33 0.40 1.11 16 31 H 0.06 0.60 6.30 -2.39 -0.02 0.58 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 35 H 0.05 0.54 6.65 -2.39 -0.02 0.53 16 36 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.56 6.52 -2.39 -0.02 0.54 16 38 H 0.05 0.63 6.73 -2.39 -0.02 0.61 16 39 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.05 1.38 8.04 -2.38 -0.02 1.36 16 42 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.41 7.88 7.41 -92.71 -0.69 7.19 16 44 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.10 2.70 7.38 -2.38 -0.02 2.68 16 46 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 47 H 0.09 2.43 7.82 -2.39 -0.02 2.41 16 48 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.09 2.39 6.40 -2.39 -0.02 2.38 16 50 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 51 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.09 1.09 7.67 -2.39 -0.02 1.08 16 53 H 0.05 0.54 6.62 -2.39 -0.02 0.52 16 54 H 0.09 1.04 6.03 -2.39 -0.01 1.03 16 Total: -1.00 -71.08 396.72 0.66 -70.42 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.19 Total: 23.78 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 5.71 Total: 1.21 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -7.22 Total: -120.94 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -71.08 0.66 -70.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096268013.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.517 kcal (2) G-P(sol) polarization free energy of solvation -71.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds