Wall clock time and date at job start Tue Mar 31 2020 18:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47253 * 2 1 4 4 C 1.52999 * 109.46713 * 119.99556 * 2 1 3 5 5 N 1.46900 * 109.46882 * 65.00400 * 4 2 1 6 6 C 1.47842 * 111.00305 * 49.15579 * 5 4 2 7 7 C 1.54906 * 104.79416 * 146.36143 * 6 5 4 8 8 C 1.55137 * 101.66007 * 322.92982 * 7 6 5 9 9 H 1.08995 * 110.85598 * 277.20597 * 8 7 6 10 10 C 1.50690 * 110.70995 * 154.03259 * 8 7 6 11 11 O 1.21279 * 120.00846 * 246.40469 * 10 8 7 12 12 N 1.34781 * 119.99589 * 66.40259 * 10 8 7 13 13 C 1.46509 * 119.99712 * 179.97438 * 12 10 8 14 14 H 1.08995 * 110.56020 * 32.10111 * 13 12 10 15 15 C 1.56686 * 110.88435 * 269.36790 * 13 12 10 16 16 C 1.55848 * 102.59683 * 241.63688 * 15 13 12 17 17 H 1.09002 * 115.56161 * 159.08930 * 16 15 13 18 18 C 1.55845 * 105.06272 * 287.69902 * 16 15 13 19 19 C 1.54853 * 103.44730 * 72.57769 * 18 16 15 20 20 C 1.55846 * 110.62119 * 155.00312 * 13 12 10 21 21 H 1.08992 * 115.56147 * 319.07739 * 20 13 12 22 22 N 1.50235 * 101.04973 * 85.71429 * 20 13 12 23 23 C 1.36940 * 130.83182 * 233.24825 * 22 20 13 24 24 H 1.08004 * 119.99843 * 0.96034 * 23 22 20 25 25 C 1.38813 * 120.00317 * 180.95683 * 23 22 20 26 26 N 1.31614 * 119.99481 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00058 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47259 * 90.00157 * 27 25 23 29 29 H 1.48498 * 109.47340 * 210.00145 * 27 25 23 30 30 H 1.48498 * 109.47367 * 330.00206 * 27 25 23 31 31 C 1.47450 * 110.99888 * 170.00038 * 5 4 2 32 32 H 1.08994 * 109.47524 * 300.00611 * 1 2 3 33 33 H 1.09007 * 109.46771 * 60.00541 * 1 2 3 34 34 H 1.08998 * 109.47295 * 179.97438 * 1 2 3 35 35 H 1.08994 * 109.47524 * 239.99389 * 2 1 3 36 36 H 1.09001 * 109.47067 * 179.97438 * 3 2 1 37 37 H 1.09007 * 109.46790 * 299.99447 * 3 2 1 38 38 H 1.08994 * 109.46854 * 59.99456 * 3 2 1 39 39 H 1.08995 * 109.47193 * 305.00079 * 4 2 1 40 40 H 1.09003 * 109.47193 * 185.00016 * 4 2 1 41 41 H 1.08994 * 110.37292 * 265.19260 * 6 5 4 42 42 H 1.09001 * 110.37163 * 27.53458 * 6 5 4 43 43 H 1.09005 * 110.99110 * 204.83135 * 7 6 5 44 44 H 1.09005 * 110.99228 * 81.02385 * 7 6 5 45 45 H 0.96998 * 120.00337 * 359.97438 * 12 10 8 46 46 H 1.08995 * 110.79271 * 123.53687 * 15 13 12 47 47 H 1.08998 * 111.26619 * 359.94621 * 15 13 12 48 48 H 1.09007 * 110.62679 * 191.06773 * 18 16 15 49 49 H 1.09000 * 110.62515 * 313.92904 * 18 16 15 50 50 H 1.09000 * 110.62638 * 118.48987 * 19 18 16 51 51 H 1.09000 * 110.62674 * 241.51133 * 19 18 16 52 52 H 0.97005 * 119.99458 * 179.97438 * 26 25 23 53 53 H 1.09003 * 109.89182 * 117.33208 * 31 5 4 54 54 H 1.08999 * 109.88756 * 356.14686 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 -2.1366 1.1905 6 6 1.9998 -2.7278 -0.1190 7 6 2.3711 -4.1981 0.1971 8 6 3.1010 -4.0516 1.5581 9 1 4.1438 -3.7707 1.4109 10 6 3.0019 -5.3261 2.3559 11 8 2.3689 -5.3466 3.3902 12 7 3.6167 -6.4435 1.9199 13 6 3.5208 -7.6825 2.6959 14 1 2.5615 -7.7388 3.2102 15 6 4.6979 -7.7900 3.7244 16 6 5.4388 -9.0799 3.2596 17 1 6.4746 -9.1710 3.5866 18 6 4.4995 -10.2552 3.6661 19 6 3.3314 -10.1488 2.6552 20 6 3.7239 -8.9237 1.7754 21 1 3.2396 -8.8704 0.8005 22 7 5.2219 -9.0387 1.7736 23 6 6.1136 -9.1031 0.7364 24 1 5.7604 -9.0562 -0.2832 25 6 7.4716 -9.2285 0.9953 26 7 7.9020 -9.2861 2.2377 27 14 8.6880 -9.3171 -0.4196 28 1 9.1353 -7.9462 -0.7744 29 1 9.8616 -10.1311 -0.0133 30 1 8.0340 -9.9443 -1.5961 31 6 2.3217 -2.9131 2.2496 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8901 38 1 1.6766 1.9563 0.8899 39 1 1.6052 -0.2616 2.1369 40 1 3.1262 -0.6443 1.2953 41 1 1.1439 -2.6889 -0.7928 42 1 2.8518 -2.2068 -0.5558 43 1 3.0391 -4.6041 -0.5626 44 1 1.4771 -4.8136 0.2977 45 1 4.1226 -6.4274 1.0925 46 1 4.3161 -7.9106 4.7382 47 1 5.3577 -6.9246 3.6620 48 1 5.0128 -11.2110 3.5607 49 1 4.1403 -10.1242 4.6869 50 1 3.2653 -11.0518 2.0483 51 1 2.3906 -9.9636 3.1736 52 1 8.8509 -9.3742 2.4187 53 1 1.5792 -3.3314 2.9292 54 1 3.0112 -2.2723 2.7991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097215410.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:18 Heat of formation + Delta-G solvation = -17.259243 kcal Electronic energy + Delta-G solvation = -30300.251904 eV Core-core repulsion = 26464.715942 eV Total energy + Delta-G solvation = -3835.535962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.49348 -40.52341 -39.27917 -36.39007 -35.27543 -34.40385 -32.31532 -30.96875 -30.42201 -30.13242 -29.16232 -27.91353 -26.50319 -26.03937 -23.89652 -22.71403 -22.13716 -21.49747 -20.83085 -20.40630 -20.20266 -18.83156 -18.38886 -17.39311 -17.07385 -16.75478 -16.29699 -16.10759 -15.73686 -15.39420 -15.31311 -15.02415 -14.67580 -14.52373 -14.33829 -14.07409 -13.70557 -13.65136 -13.32963 -13.16384 -12.94672 -12.91033 -12.86162 -12.75460 -12.73687 -12.67374 -12.37950 -12.25036 -12.10505 -11.95610 -11.88951 -11.87254 -11.75487 -11.68352 -11.57486 -11.37361 -11.17224 -10.93895 -10.91446 -10.60676 -9.90919 -9.24753 -8.86068 -7.74727 -5.14722 1.49670 1.50792 1.58599 1.66494 2.28424 2.51122 2.99825 3.38606 3.45629 3.46860 3.59773 3.85290 3.95273 4.01624 4.06542 4.07772 4.21804 4.26557 4.28243 4.36726 4.37226 4.44293 4.49622 4.54149 4.63258 4.71178 4.72372 4.74910 4.83399 4.84120 4.86562 4.89871 4.92165 4.97448 5.05452 5.08816 5.09660 5.16365 5.17036 5.18550 5.20327 5.28938 5.38537 5.47515 5.52952 5.53373 5.61637 5.72817 5.90349 5.97297 6.13665 6.27866 6.66936 7.06788 7.30672 7.73749 8.59732 9.32524 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.002733 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.984680 B =10244.391734 C =11434.936728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.053 3.947 5 N -0.532 5.532 6 C 0.047 3.953 7 C -0.111 4.111 8 C -0.127 4.127 9 H 0.109 0.891 10 C 0.521 3.479 11 O -0.583 6.583 12 N -0.701 5.701 13 C 0.140 3.860 14 H 0.083 0.917 15 C -0.133 4.133 16 C 0.140 3.860 17 H 0.114 0.886 18 C -0.133 4.133 19 C -0.121 4.121 20 C 0.128 3.872 21 H 0.104 0.896 22 N -0.608 5.608 23 C -0.213 4.213 24 H 0.087 0.913 25 C -0.068 4.068 26 N -0.949 5.949 27 Si 0.974 3.026 28 H -0.289 1.289 29 H -0.303 1.303 30 H -0.271 1.271 31 C 0.062 3.938 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.406 0.594 46 H 0.064 0.936 47 H 0.034 0.966 48 H 0.037 0.963 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.080 0.920 52 H 0.244 0.756 53 H 0.073 0.927 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.910 15.445 -5.430 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.075 4.075 5 N -0.256 5.256 6 C -0.080 4.080 7 C -0.150 4.150 8 C -0.149 4.149 9 H 0.127 0.873 10 C 0.308 3.692 11 O -0.464 6.464 12 N -0.349 5.349 13 C 0.033 3.967 14 H 0.101 0.899 15 C -0.174 4.174 16 C 0.033 3.967 17 H 0.131 0.869 18 C -0.172 4.172 19 C -0.160 4.160 20 C 0.021 3.979 21 H 0.122 0.878 22 N -0.329 5.329 23 C -0.341 4.341 24 H 0.105 0.895 25 C -0.261 4.261 26 N -0.599 5.599 27 Si 0.804 3.196 28 H -0.217 1.217 29 H -0.230 1.230 30 H -0.196 1.196 31 C -0.066 4.066 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.241 0.759 46 H 0.083 0.917 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.087 0.913 50 H 0.078 0.922 51 H 0.098 0.902 52 H 0.054 0.946 53 H 0.092 0.908 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.614 15.386 -4.779 21.093 hybrid contribution 2.286 -0.286 -0.575 2.374 sum -11.328 15.100 -5.354 19.621 Atomic orbital electron populations 1.21709 0.94472 1.01876 1.01286 1.21228 0.96834 0.96298 0.97119 1.21798 1.00894 0.95209 1.02343 1.22460 0.97769 0.87827 0.99408 1.63709 1.56429 1.02503 1.02979 1.23098 1.00684 0.92659 0.91606 1.22705 1.00368 0.97992 0.93907 1.22500 1.02573 0.92671 0.97186 0.87341 1.20742 0.77749 0.85502 0.85186 1.90632 1.43992 1.85618 1.26176 1.45940 1.52265 1.09805 1.26920 1.22740 0.97388 0.84012 0.92574 0.89885 1.23604 0.96927 0.99171 0.97676 1.23538 0.98779 0.91198 0.83195 0.86889 1.22975 0.97058 0.98972 0.98226 1.22852 0.97557 0.98117 0.97502 1.23334 0.85089 0.92781 0.96691 0.87801 1.46674 1.00389 1.84004 1.01821 1.19367 0.87087 1.40672 0.87012 0.89520 1.25428 0.98425 1.03890 0.98307 1.69730 1.13015 1.58739 1.18396 0.85128 0.78542 0.77024 0.78915 1.21675 1.23040 1.19557 1.22624 0.96525 0.93094 0.94371 0.93237 0.92474 0.92714 0.90702 0.92740 0.91724 0.92538 0.91053 0.94751 0.88923 0.92148 0.88406 0.90951 0.75877 0.91693 0.94709 0.94426 0.91282 0.92207 0.90177 0.94591 0.90824 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.08 71.98 0.65 -1.26 16 2 C -0.10 -1.32 2.58 -10.79 -0.03 -1.34 16 3 C -0.14 -1.66 9.19 71.98 0.66 -1.00 16 4 C 0.05 0.90 4.21 86.30 0.36 1.27 16 5 N -0.53 -10.71 4.77 -885.53 -4.22 -14.93 16 6 C 0.05 0.79 5.22 86.77 0.45 1.24 16 7 C -0.11 -2.13 6.51 31.98 0.21 -1.92 16 8 C -0.13 -3.04 3.34 -10.36 -0.03 -3.08 16 9 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 10 C 0.52 16.53 7.13 87.65 0.63 17.15 16 11 O -0.58 -22.55 15.06 -3.03 -0.05 -22.60 16 12 N -0.70 -22.64 5.13 -431.85 -2.22 -24.85 16 13 C 0.14 4.97 2.82 47.26 0.13 5.10 16 14 H 0.08 2.94 7.22 -2.39 -0.02 2.93 16 15 C -0.13 -5.41 6.36 32.87 0.21 -5.20 16 16 C 0.14 6.35 4.67 46.23 0.22 6.57 16 17 H 0.11 6.12 5.52 -2.39 -0.01 6.11 16 18 C -0.13 -5.13 6.44 32.21 0.21 -4.93 16 19 C -0.12 -4.07 6.44 32.21 0.21 -3.86 16 20 C 0.13 4.67 5.06 46.23 0.23 4.90 16 21 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 22 N -0.61 -27.95 2.99 -615.24 -1.84 -29.79 16 23 C -0.21 -10.81 10.59 84.03 0.89 -9.92 16 24 H 0.09 4.15 7.83 -2.91 -0.02 4.13 16 25 C -0.07 -3.63 5.50 84.86 0.47 -3.17 16 26 N -0.95 -54.23 10.46 21.65 0.23 -54.01 16 27 Si 0.97 43.67 29.55 68.60 2.03 45.70 16 28 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 29 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 30 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 31 C 0.06 1.51 6.30 86.65 0.55 2.05 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.05 0.90 7.67 -2.39 -0.02 0.88 16 35 H 0.07 1.00 6.29 -2.39 -0.02 0.98 16 36 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.03 0.59 7.96 -2.39 -0.02 0.57 16 41 H 0.09 1.40 8.06 -2.39 -0.02 1.38 16 42 H 0.06 0.90 7.06 -2.39 -0.02 0.89 16 43 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.07 1.53 8.04 -2.38 -0.02 1.51 16 45 H 0.41 12.58 8.66 -92.71 -0.80 11.78 16 46 H 0.06 2.45 7.79 -2.39 -0.02 2.43 16 47 H 0.03 1.54 8.04 -2.39 -0.02 1.52 16 48 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 49 H 0.07 2.34 7.79 -2.39 -0.02 2.33 16 50 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.08 2.28 7.82 -2.39 -0.02 2.26 16 52 H 0.24 13.81 8.31 -92.70 -0.77 13.04 16 53 H 0.07 2.20 6.81 -2.39 -0.02 2.18 16 54 H 0.06 1.35 7.49 -2.39 -0.02 1.33 16 Total: -1.00 -62.54 408.65 0.00 -62.54 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: 0.06 Total: 35.34 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 6.01 Total: 2.61 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -8.05 Total: -123.59 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -62.54 0.00 -62.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097215410.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.277 kcal (2) G-P(sol) polarization free energy of solvation -62.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds