Wall clock time and date at job start Tue Mar 31 2020 18:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47063 * 2 1 4 4 C 1.53000 * 109.47070 * 119.99338 * 2 1 3 5 5 N 1.46902 * 109.46606 * 65.00240 * 4 2 1 6 6 C 1.48535 * 111.00129 * 52.60692 * 5 4 2 7 7 C 1.54937 * 103.22438 * 159.71945 * 6 5 4 8 8 C 1.54590 * 102.92451 * 322.58178 * 7 6 5 9 9 C 1.47905 * 110.99473 * 169.99879 * 5 4 2 10 10 H 1.08996 * 110.08727 * 333.60126 * 9 5 4 11 11 C 1.50703 * 109.91601 * 94.80369 * 9 5 4 12 12 O 1.21276 * 120.00253 * 359.04452 * 11 9 5 13 13 N 1.34776 * 119.99852 * 179.03778 * 11 9 5 14 14 C 1.46504 * 119.99737 * 179.97438 * 13 11 9 15 15 H 1.08999 * 110.55947 * 32.10438 * 14 13 11 16 16 C 1.54218 * 110.49397 * 269.09473 * 14 13 11 17 17 C 1.55845 * 103.56407 * 241.50488 * 16 14 13 18 18 H 1.09010 * 116.12346 * 159.06439 * 17 16 14 19 19 C 1.55846 * 105.06869 * 288.09071 * 17 16 14 20 20 C 1.54852 * 103.44066 * 71.82554 * 19 17 16 21 21 C 1.55842 * 110.62296 * 155.00283 * 14 13 11 22 22 H 1.09000 * 116.13291 * 319.33744 * 21 14 13 23 23 N 1.50232 * 101.04985 * 32.85806 * 17 16 14 24 24 C 1.36943 * 130.84102 * 125.99175 * 23 17 16 25 25 H 1.08002 * 119.99788 * 180.02562 * 24 23 17 26 26 C 1.38811 * 119.99622 * 0.30184 * 24 23 17 27 27 N 1.31614 * 120.00467 * 359.72375 * 26 24 23 28 28 Si 1.86801 * 119.99700 * 179.72266 * 26 24 23 29 29 H 1.48504 * 109.47306 * 359.97438 * 28 26 24 30 30 H 1.48499 * 109.47021 * 119.99661 * 28 26 24 31 31 H 1.48501 * 109.47039 * 240.00078 * 28 26 24 32 32 H 1.09002 * 109.47012 * 300.00777 * 1 2 3 33 33 H 1.09003 * 109.47262 * 60.00468 * 1 2 3 34 34 H 1.08997 * 109.47079 * 179.97438 * 1 2 3 35 35 H 1.08997 * 109.47099 * 239.99968 * 2 1 3 36 36 H 1.08998 * 109.47141 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.46700 * 299.99876 * 3 2 1 38 38 H 1.08992 * 109.47450 * 59.99357 * 3 2 1 39 39 H 1.09004 * 109.47360 * 305.00443 * 4 2 1 40 40 H 1.08996 * 109.47044 * 184.99789 * 4 2 1 41 41 H 1.08995 * 110.66517 * 41.28239 * 6 5 4 42 42 H 1.09001 * 110.80531 * 278.21838 * 6 5 4 43 43 H 1.09005 * 110.72092 * 204.22333 * 7 6 5 44 44 H 1.08999 * 110.87405 * 81.01626 * 7 6 5 45 45 H 1.08999 * 110.31140 * 263.04521 * 8 7 6 46 46 H 1.09000 * 110.39481 * 140.91767 * 8 7 6 47 47 H 0.97001 * 119.99988 * 0.02562 * 13 11 9 48 48 H 1.09011 * 110.64106 * 122.94505 * 16 14 13 49 49 H 1.08998 * 110.50276 * 0.02562 * 16 14 13 50 50 H 1.08994 * 110.62828 * 190.31215 * 19 17 16 51 51 H 1.08994 * 110.62578 * 313.17727 * 19 17 16 52 52 H 1.09002 * 110.62335 * 118.49236 * 20 19 17 53 53 H 1.09000 * 110.62347 * 241.51019 * 20 19 17 54 54 H 0.96995 * 120.00147 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6513 -2.1366 1.1905 6 6 2.0754 -2.7522 -0.0930 7 6 2.0776 -4.2686 0.2248 8 6 2.6029 -4.3165 1.6780 9 6 2.3240 -2.9154 2.2529 10 1 3.2617 -2.4352 2.5323 11 6 1.4246 -3.0243 3.4572 12 8 0.3345 -2.4928 3.4501 13 7 1.8316 -3.7126 4.5421 14 6 0.9575 -3.8180 5.7131 15 1 -0.0895 -3.8237 5.4099 16 6 1.2353 -2.6658 6.6997 17 6 1.7063 -3.3973 7.9927 18 1 2.2852 -2.8007 8.6979 19 6 0.4222 -4.0642 8.5716 20 6 0.1422 -5.2234 7.5838 21 6 1.2970 -5.0957 6.5383 22 1 1.5152 -5.9951 5.9625 23 7 2.4114 -4.5885 7.4089 24 6 3.6811 -5.0626 7.6052 25 1 4.0125 -5.9497 7.0860 26 6 4.5401 -4.4063 8.4759 27 7 4.1362 -3.3252 9.1087 28 14 6.2694 -5.0574 8.7497 29 1 6.4753 -6.2765 7.9270 30 1 7.2568 -4.0209 8.3551 31 1 6.4506 -5.3930 10.1849 32 1 -0.3633 0.5140 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6766 1.9564 0.8898 39 1 1.6053 -0.2616 2.1370 40 1 3.1263 -0.6442 1.2952 41 1 3.0746 -2.4155 -0.3695 42 1 1.3617 -2.5262 -0.8853 43 1 2.7505 -4.8024 -0.4464 44 1 1.0697 -4.6794 0.1651 45 1 3.6731 -4.5229 1.6868 46 1 2.0675 -5.0739 2.2506 47 1 2.7036 -4.1375 4.5479 48 1 0.3259 -2.0958 6.8907 49 1 2.0228 -2.0167 6.3167 50 1 0.6085 -4.4502 9.5737 51 1 -0.4066 -3.3565 8.5818 52 1 0.1894 -6.1843 8.0962 53 1 -0.8265 -5.0914 7.1016 54 1 4.7366 -2.8664 9.7168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097405072.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:05 Heat of formation + Delta-G solvation = -11.787120 kcal Electronic energy + Delta-G solvation = -30982.950932 eV Core-core repulsion = 27147.652259 eV Total energy + Delta-G solvation = -3835.298673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.50086 -40.55402 -38.95363 -36.52299 -35.21031 -34.38109 -32.09035 -31.06139 -30.96819 -30.16012 -28.84215 -27.95666 -26.38839 -26.11003 -23.91404 -22.53703 -22.27496 -21.51249 -20.81941 -20.42344 -20.21497 -18.83131 -18.17869 -17.37312 -17.20866 -16.76934 -16.20561 -15.97612 -15.79076 -15.44092 -15.19444 -14.95617 -14.79332 -14.47084 -14.25131 -13.94873 -13.80125 -13.68447 -13.62414 -13.18351 -12.91198 -12.90004 -12.79610 -12.76550 -12.72156 -12.49068 -12.42266 -12.14436 -12.08238 -11.93147 -11.87025 -11.84353 -11.70398 -11.68360 -11.59548 -11.41711 -11.13841 -10.94701 -10.89348 -10.53358 -9.86268 -9.33098 -8.85754 -7.74624 -5.14472 1.49089 1.50414 1.59185 1.78033 2.20805 2.51121 3.07348 3.38897 3.45920 3.57679 3.64387 3.89313 3.94241 4.01573 4.04481 4.11600 4.15654 4.22228 4.27954 4.32000 4.47151 4.49136 4.52118 4.60174 4.63456 4.69481 4.72027 4.74803 4.80920 4.82762 4.84409 4.88989 4.91600 5.01175 5.03556 5.07884 5.10260 5.13553 5.17205 5.19863 5.22910 5.27521 5.38616 5.43389 5.51456 5.53387 5.62684 5.74147 5.87874 5.90758 6.08725 6.27749 6.76015 7.06959 7.42907 7.73825 8.59927 9.32981 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.003189 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.533158 B = 8778.771852 C = 9257.595526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.055 3.945 5 N -0.506 5.506 6 C 0.036 3.964 7 C -0.116 4.116 8 C -0.119 4.119 9 C 0.049 3.951 10 H 0.077 0.923 11 C 0.516 3.484 12 O -0.567 6.567 13 N -0.708 5.708 14 C 0.144 3.856 15 H 0.081 0.919 16 C -0.132 4.132 17 C 0.140 3.860 18 H 0.115 0.885 19 C -0.132 4.132 20 C -0.119 4.119 21 C 0.128 3.872 22 H 0.104 0.896 23 N -0.609 5.609 24 C -0.211 4.211 25 H 0.087 0.913 26 C -0.068 4.068 27 N -0.949 5.949 28 Si 0.973 3.027 29 H -0.264 1.264 30 H -0.299 1.299 31 H -0.301 1.301 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.038 0.962 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.070 0.930 47 H 0.404 0.596 48 H 0.061 0.939 49 H 0.031 0.969 50 H 0.038 0.962 51 H 0.068 0.932 52 H 0.060 0.940 53 H 0.079 0.921 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 0.918 -19.856 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 C -0.203 4.203 4 C -0.073 4.073 5 N -0.231 5.231 6 C -0.091 4.091 7 C -0.154 4.154 8 C -0.158 4.158 9 C -0.063 4.063 10 H 0.095 0.905 11 C 0.302 3.698 12 O -0.446 6.446 13 N -0.358 5.358 14 C 0.038 3.962 15 H 0.099 0.901 16 C -0.172 4.172 17 C 0.034 3.966 18 H 0.132 0.868 19 C -0.172 4.172 20 C -0.159 4.159 21 C 0.021 3.979 22 H 0.122 0.878 23 N -0.330 5.330 24 C -0.339 4.339 25 H 0.105 0.895 26 C -0.261 4.261 27 N -0.599 5.599 28 Si 0.804 3.196 29 H -0.188 1.188 30 H -0.226 1.226 31 H -0.229 1.229 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.089 0.911 47 H 0.238 0.762 48 H 0.079 0.921 49 H 0.050 0.950 50 H 0.057 0.943 51 H 0.086 0.914 52 H 0.079 0.921 53 H 0.097 0.903 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.937 1.264 -19.679 20.328 hybrid contribution 2.154 0.054 1.026 2.386 sum -2.783 1.318 -18.653 18.906 Atomic orbital electron populations 1.21667 0.94918 1.01671 1.00796 1.21156 0.96429 0.96288 0.96798 1.21807 1.01101 0.95170 1.02174 1.22355 0.97486 0.88343 0.99107 1.64321 1.54966 1.01766 1.02012 1.23333 0.99946 0.94118 0.91660 1.22482 1.02169 0.95727 0.94996 1.22423 1.03035 0.92988 0.97318 1.22351 0.94581 0.97861 0.91511 0.90510 1.20928 0.87377 0.77467 0.83994 1.90619 1.23729 1.47408 1.82803 1.45980 1.20948 1.54233 1.14627 1.22210 0.93321 0.96466 0.84253 0.90110 1.23186 0.98812 0.97126 0.98108 1.23576 0.90280 0.89157 0.93627 0.86764 1.22955 0.98233 0.97997 0.97983 1.22910 0.97854 0.98207 0.96921 1.23453 0.88417 0.94347 0.91701 0.87830 1.46715 1.09179 1.28534 1.48586 1.19405 0.87282 1.07324 1.19939 0.89508 1.25425 1.01808 0.98496 1.00349 1.69728 1.35614 1.21403 1.33162 0.85063 0.80204 0.77500 0.76883 1.18837 1.22624 1.22867 0.94605 0.91853 0.92982 0.89693 0.92268 0.91106 0.93522 0.93464 0.94380 0.92380 0.88902 0.88233 0.91348 0.88610 0.91073 0.76156 0.92080 0.94990 0.94306 0.91360 0.92092 0.90295 0.94613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.08 71.98 0.65 -2.10 16 2 C -0.09 -1.63 2.60 -10.79 -0.03 -1.66 16 3 C -0.14 -2.32 9.19 71.98 0.66 -1.66 16 4 C 0.06 1.31 4.42 86.30 0.38 1.70 16 5 N -0.51 -12.47 3.99 -862.40 -3.44 -15.91 16 6 C 0.04 0.63 5.09 86.65 0.44 1.07 16 7 C -0.12 -1.86 7.06 31.80 0.22 -1.63 16 8 C -0.12 -2.33 6.47 31.47 0.20 -2.13 16 9 C 0.05 1.27 2.87 44.31 0.13 1.40 16 10 H 0.08 1.95 7.58 -2.39 -0.02 1.94 16 11 C 0.52 17.49 6.99 87.66 0.61 18.11 16 12 O -0.57 -23.41 16.10 -3.02 -0.05 -23.46 16 13 N -0.71 -24.01 4.91 -435.94 -2.14 -26.16 16 14 C 0.14 5.32 2.79 46.39 0.13 5.45 16 15 H 0.08 2.99 7.24 -2.39 -0.02 2.98 16 16 C -0.13 -5.51 6.20 31.99 0.20 -5.32 16 17 C 0.14 6.50 4.72 46.23 0.22 6.72 16 18 H 0.12 6.27 5.52 -2.38 -0.01 6.26 16 19 C -0.13 -5.20 6.44 32.21 0.21 -4.99 16 20 C -0.12 -4.10 6.46 32.38 0.21 -3.89 16 21 C 0.13 4.77 5.09 46.39 0.24 5.00 16 22 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 23 N -0.61 -28.44 2.98 -614.37 -1.83 -30.27 16 24 C -0.21 -10.81 10.59 84.03 0.89 -9.92 16 25 H 0.09 4.20 7.83 -2.91 -0.02 4.18 16 26 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 27 N -0.95 -54.68 10.46 21.65 0.23 -54.45 16 28 Si 0.97 44.00 29.55 68.60 2.03 46.03 16 29 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 30 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 31 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 32 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.23 7.75 -2.39 -0.02 1.21 16 35 H 0.08 1.32 6.52 -2.39 -0.02 1.31 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 40 H 0.04 0.84 7.82 -2.39 -0.02 0.82 16 41 H 0.06 0.86 8.01 -2.39 -0.02 0.84 16 42 H 0.09 1.46 7.56 -2.39 -0.02 1.44 16 43 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.07 1.52 7.62 -2.39 -0.02 1.50 16 47 H 0.40 13.18 8.62 -92.71 -0.80 12.38 16 48 H 0.06 2.40 7.82 -2.38 -0.02 2.38 16 49 H 0.03 1.47 7.96 -2.39 -0.02 1.45 16 50 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.07 2.37 7.82 -2.39 -0.02 2.35 16 52 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 53 H 0.08 2.31 7.83 -2.39 -0.02 2.29 16 54 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -65.39 410.39 0.68 -64.70 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: 0.06 Total: 36.60 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.83 Total: 2.92 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -7.19 Total: -126.79 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -65.39 0.68 -64.70 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097405072.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.914 kcal (2) G-P(sol) polarization free energy of solvation -65.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds